FC875647

Overview
NameFC875647
Unique NameFC875647
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10209 contig Ccv1_Contig10209:1..697. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875647 vs. ExPASy Swiss-Prot
Match: YKT61_ARATH (VAMP-like protein YKT61 OS=Arabidopsis thaliana GN=YKT61 PE=2 SV=1)

HSP 1 Score: 332.028 bits (850), Expect = 1.808e-90
Identity = 160/186 (86.02%), Postives = 173/186 (93.01%), Query Frame = 3
Query:  135 MKITALLVLKCNPDGSDPVVLATAMDVSHFGYFQRSSVKEFILFAARTVGKRTPPGQRQSVQHEEYKVHSYNRNGLCAMGFMDDHYPVRSSFSLLNQVLDEYQKNFGESWRTAQADNMQPWPYLNEALNKYQDPAEADKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSAASQMFY 692
            MKITALLVLKC P+ SDPV+L+ A DVSHFGYFQRSSVKEF++F  RTV  RTPP QRQSVQHEEYKVH+YNRNGLCA+GFMDDHYPVRS+FSLLNQVLDEYQK+FGESWR+A+ D+ QPWPYL EALNK+QDPAEADKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLS ASQMFY
Sbjct:    1 MKITALLVLKCAPEASDPVILSNASDVSHFGYFQRSSVKEFVVFVGRTVASRTPPSQRQSVQHEEYKVHAYNRNGLCAVGFMDDHYPVRSAFSLLNQVLDEYQKSFGESWRSAKEDSNQPWPYLTEALNKFQDPAEADKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSMASQMFY 186          
BLAST of FC875647 vs. ExPASy Swiss-Prot
Match: YKT62_ARATH (VAMP-like protein YKT62 OS=Arabidopsis thaliana GN=YKT62 PE=2 SV=1)

HSP 1 Score: 283.108 bits (723), Expect = 9.631e-76
Identity = 140/188 (74.47%), Postives = 164/188 (87.23%), Query Frame = 3
Query:  135 MKITALLVLKCNPDGSDPVVLATAMDVSHFGYFQ--RSSVKEFILFAARTVGKRTPPGQRQSVQHEEYKVHSYNRNGLCAMGFMDDHYPVRSSFSLLNQVLDEYQKNFGESWRTAQADNMQPWPYLNEALNKYQDPAEADKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSAASQMFY 692
            MKITALLVLKC+P+  +PV+LA   D+S FG F   RS+ +EFI+F ARTV +RTPPGQRQSV+HEEYKVH+YN NGLCA+GFMDDHYPVRS+FSLLNQVLD YQK++G++WR    ++ QPWPYL EA +K++DPAEADKLLKIQRELDETKIILHKTID VLARGEKLDSLVEKSS+LS AS+MFY
Sbjct:    1 MKITALLVLKCDPETREPVILANVSDLSQFGKFSFYRSNFEEFIVFIARTVARRTPPGQRQSVKHEEYKVHAYNINGLCAVGFMDDHYPVRSAFSLLNQVLDVYQKDYGDTWRF--ENSSQPWPYLKEASDKFRDPAEADKLLKIQRELDETKIILHKTIDGVLARGEKLDSLVEKSSELSLASKMFY 186          
BLAST of FC875647 vs. ExPASy Swiss-Prot
Match: YKT6_SCHPO (Synaptobrevin homolog ykt6 OS=Schizosaccharomyces pombe GN=ykt6 PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 6.966e-42
Identity = 91/189 (48.15%), Postives = 131/189 (69.31%), Query Frame = 3
Query:  135 MKITALLVLKCNPDGSDPV-VLATAMDVSHFGYFQRSSVKEFILFAARTVGKRTPPGQRQSVQHEEYKVHSYNRN-GLCAMGFMDDHYPVRSSFSLLNQVLDEY-QKNFGESWRTAQADNMQPWPYLNEALNKYQDPAEADKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSAASQMFY 692
            MK+ ++ +L+ +P    PV +L TA D+S F +FQRSS+ EF+ F  +TV +RT PGQRQ V+   Y  H YNR+ GLC +   D  YP+R +++LLN++LDE+  KN    W +        +P L+  L+KYQDP +AD ++++Q+ELDETK +LHKTI+SVLARGEKLD L+++S +LS  S+MFY
Sbjct:    1 MKLYSVSILRFDPK---PVQLLCTASDLSSFSFFQRSSIGEFMNFFTKTVAERTNPGQRQDVEQSNYVFHVYNRSDGLCGVIASDKEYPLRVAYTLLNKILDEFLTKNPRTKWESGAVT--LSFPELDTYLSKYQDPKQADTIMRVQQELDETKDVLHKTIESVLARGEKLDDLIQRSDNLSTQSRMFY 184          
BLAST of FC875647 vs. ExPASy Swiss-Prot
Match: YKT6_ASHGO (Synaptobrevin homolog YKT6 OS=Ashbya gossypii GN=YKT6 PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 7.702e-41
Identity = 91/189 (48.15%), Postives = 129/189 (68.25%), Query Frame = 3
Query:  135 MKITALLVLKCNPDGSDPVVLATAMDVSHFGYFQRSSVKEFILFAARTVGKRTPPGQRQSVQHEEYKVHSYNRN-GLCAMGFMDDHYPVRSSFSLLNQVLDEYQKNFGES-WRT-AQADNMQPWPYLNEALNKYQDPAEADKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSAASQMFY 692
            MKI ++ +L+ +  G+  + L +A D+S FG+F+R+ V +F+ F   TV  RT  GQRQS++   Y  H Y+R+ GLC +   D  YPVR +++LLN+VLDEY      + WR  AQ  +      L   L KYQDP++AD ++++Q+ELDETKI+LHKTI+SVL RGEKLD+LV+KS  LSA+S+MFY
Sbjct:    1 MKIYSIAILRNS--GNKALELCSAKDLSQFGFFERNGVSQFMTFFGETVAGRTGAGQRQSIEEGNYVGHVYSRSEGLCGVLITDKEYPVRPAYTLLNKVLDEYLVAHPPAEWRDIAQTSDQLKLRELEMYLAKYQDPSQADSIMRVQQELDETKIVLHKTIESVLQRGEKLDNLVDKSESLSASSRMFY 187          
BLAST of FC875647 vs. ExPASy Swiss-Prot
Match: YKT6_CANGA (Synaptobrevin homolog YKT6 OS=Candida glabrata GN=YKT6 PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.897e-39
Identity = 85/169 (50.30%), Postives = 119/169 (70.41%), Query Frame = 3
Query:  195 LATAMDVSHFGYFQRSSVKEFILFAARTVGKRTPPGQRQSVQHEEYKVHSYNRN-GLCAMGFMDDHYPVRSSFSLLNQVLDEYQ-KNFGESWRTAQADNMQ-PWPYLNEALNKYQDPAEADKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSAASQMFY 692
            L    D+S FG+F+R+SV +F+ F A TV  RT  GQRQSV+   Y  H Y R+ G+C +   D  YPVR +++LLN+VLDEY   +  + W++  A N       L+  ++KYQDPA+AD ++K+Q+ELDETKI+LHKTI++VL RGEKLD+LV+KS  L+A+S+MFY
Sbjct:   24 LTEVKDLSQFGFFERNSVGQFMTFFAETVATRTTAGQRQSVEEGNYIGHVYARSEGICGVLITDKDYPVRPAYTLLNKVLDEYLVAHPADQWKSITATNDSLKMAELSTYISKYQDPAQADAIMKVQQELDETKIVLHKTIENVLQRGEKLDNLVDKSESLTASSKMFY 192          
BLAST of FC875647 vs. ExPASy Swiss-Prot
Match: YKT6_YEAST (Synaptobrevin homolog YKT6 OS=Saccharomyces cerevisiae GN=YKT6 PE=1 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.236e-39
Identity = 83/175 (47.43%), Postives = 121/175 (69.14%), Query Frame = 3
Query:  177 GSDPVVLATAMDVSHFGYFQRSSVKEFILFAARTVGKRTPPGQRQSVQHEEYKVHSYNRN-GLCAMGFMDDHYPVRSSFSLLNQVLDEYQ-KNFGESWR-TAQADNMQPWPYLNEALNKYQDPAEADKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSAASQMFY 692
            G   + L+   D+S FG+F+RSSV +F+ F A TV  RT  GQRQS++   Y  H Y R+ G+C +   D  YPVR +++LLN++LDEY   +  E W    + ++      L+  ++KYQDP++AD ++K+Q+ELDETKI+LHKTI++VL RGEKLD+LV+KS  L+A+S+MFY
Sbjct:   13 GEKALELSEVKDLSQFGFFERSSVGQFMTFFAETVASRTGAGQRQSIEEGNYIGHVYARSEGICGVLITDKEYPVRPAYTLLNKILDEYLVAHPKEEWADVTETNDALKMKQLDTYISKYQDPSQADAIMKVQQELDETKIVLHKTIENVLQRGEKLDNLVDKSESLTASSKMFY 187          
BLAST of FC875647 vs. ExPASy Swiss-Prot
Match: YKT6_DEBHA (Synaptobrevin homolog YKT6 OS=Debaryomyces hansenii GN=YKT6 PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 9.415e-39
Identity = 85/189 (44.97%), Postives = 125/189 (66.14%), Query Frame = 3
Query:  135 MKITALLVLKCNPDGSDPVVLATAMDVSHFGYFQRSSVKEFILFAARTVGKRTPPGQRQSVQHEEYKVHSYNRN-GLCAMGFMDDHYPVRSSFSLLNQVLDEYQKNFGES-WRTAQADNMQ-PWPYLNEALNKYQDPAEADKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSAASQMFY 692
            MKI  + +L+    G   + L +A D+S F +F+R+ V +F+ F + TV +RT  GQRQS++   Y  H+Y R+ GL  +   D  YPVR +++L+N++L+EY     +  W    A N    +  L   + KYQDP++AD ++K+Q+ELDETKI+LHKTI+SVL RGEKLDSLV+KS  LS++S+MFY
Sbjct:    1 MKIYYIGILRIG--GEKALELTSARDLSQFSFFERNGVSQFMTFFSETVSQRTQAGQRQSIEEGNYIGHTYTRSEGLACVIITDKEYPVRPAYTLINKILEEYLSLHPQKDWANISATNASFNYDNLEHYIKKYQDPSQADSIMKVQQELDETKIVLHKTIESVLQRGEKLDSLVDKSEALSSSSRMFY 187          
BLAST of FC875647 vs. ExPASy Swiss-Prot
Match: YKT6_KLULA (Synaptobrevin homolog YKT6 OS=Kluyveromyces lactis GN=YKT6 PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.606e-38
Identity = 89/189 (47.09%), Postives = 128/189 (67.72%), Query Frame = 3
Query:  135 MKITALLVLKCNPDGSDPVVLATAMDVSHFGYFQRSSVKEFILFAARTVGKRTPPGQRQSVQHEEYKVHSYNR-NGLCAMGFMDDHYPVRSSFSLLNQVLDEYQKNFGE-SWR-TAQADNMQPWPYLNEALNKYQDPAEADKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSAASQMFY 692
            MKI  + VL+ + D +  + L++  D+S FG+F+R+SV +F+ F + TV  RT  GQRQSV+   Y  H Y R  G+C +   D  YPVR +++LLN+VLDEY        W+   ++D+      L+  + KYQDP++AD ++++Q+ELDETKI LHKTI++VL RGEKLD+LV+KS  LSAAS+MFY
Sbjct:    1 MKIYYIGVLRNSDDKT--LELSSVKDLSQFGFFERNSVAQFMSFFSETVAGRTSAGQRQSVEEGNYVGHVYARPEGICGVLITDKEYPVRPAYTLLNKVLDEYLVAHPPIQWKDVTESDDSLKLKELDIYIAKYQDPSQADAIMRVQQELDETKITLHKTIENVLQRGEKLDNLVDKSESLSAASRMFY 187          
BLAST of FC875647 vs. ExPASy Swiss-Prot
Match: YKT6_YARLI (Synaptobrevin homolog YKT6 OS=Yarrowia lipolytica GN=YKT6 PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.097e-38
Identity = 87/189 (46.03%), Postives = 131/189 (69.31%), Query Frame = 3
Query:  135 MKITALLVLKCNPDGSDPVVLATAMDVSHFGYFQRSSVKEFILFAARTVGKRTPPGQRQSVQHEEYKVHSYNRN-GLCAMGFMDDHYPVRSSFSLLNQVLDEY-QKNFGESWRTA-QADNMQPWPYLNEALNKYQDPAEADKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSAASQMFY 692
            MK+  + +L+  P+  + V LA+A D+S + +F+RS+V +   F A TV  RT PGQRQSV+  +Y  H+Y R+ GL  +   D  YPVR +++LLN+VL+EY  K+    W  A +A +    P L + + +YQDP +AD ++++Q+ELDETKI+LHKTI+SVLARGE+LD+LV+KS  LS +S++F+
Sbjct:    1 MKLYYIGILR--PNKPEAVQLASASDLSSYSWFERSTVGQAFTFLAETVIPRTEPGQRQSVEENDYVGHAYLRSDGLGGVIITDQEYPVRVAYTLLNKVLEEYLTKHPKAEWENAKEASSKLAMPELEDYVKRYQDPHQADAIMRVQQELDETKIVLHKTIESVLARGERLDTLVDKSEALSQSSKIFF 187          
BLAST of FC875647 vs. ExPASy Swiss-Prot
Match: YKT6_BOVIN (Synaptobrevin homolog YKT6 OS=Bos taurus GN=YKT6 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.835e-35
Identity = 86/188 (45.74%), Postives = 117/188 (62.23%), Query Frame = 3
Query:  135 MKITALLVLKCNPDGSDPVVLATAMDVSHFGYFQRSSVKEFILFAARTVGKRTPPGQRQSVQHEEYKVHSYNRN-GLCAMGFMDDHYPVRSSFSLLNQVLDEYQKNFGE-SWRTAQADNMQPWPYLNEALNKYQDPAEADKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSAASQMFY 692
            MK+ +L VL      S  V+L  A DVS F +FQRSSV+EF+ F ++ + +R+  G R SV+ +EY  H Y RN  L  +   D  YP R +F+LL +VLDE+ K      W T   D ++ +  L+  L++YQ+P EAD + K+Q ELDETKIILH T++S+L RGEKLD LV KS  L   S+ FY
Sbjct:    1 MKLYSLSVLYKGE--SKTVLLKAAYDVSSFSFFQRSSVQEFMTFTSQLIVERSAKGSRASVKEQEYLCHVYVRNDSLAGVVIADSEYPSRVAFTLLEKVLDEFSKQVDRIDWPTGSPDTIR-YSGLDSQLSRYQNPREADPMTKVQAELDETKIILHNTMESLLERGEKLDDLVSKSEVLGIQSKAFY 185          
The following BLAST results are available for this feature:
BLAST of FC875647 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
YKT61_ARATH1.808e-9086.02VAMP-like protein YKT61 OS=Arabidopsis thaliana GN... [more]
YKT62_ARATH9.631e-7674.47VAMP-like protein YKT62 OS=Arabidopsis thaliana GN... [more]
YKT6_SCHPO6.966e-4248.15Synaptobrevin homolog ykt6 OS=Schizosaccharomyces ... [more]
YKT6_ASHGO7.702e-4148.15Synaptobrevin homolog YKT6 OS=Ashbya gossypii GN=Y... [more]
YKT6_CANGA1.897e-3950.30Synaptobrevin homolog YKT6 OS=Candida glabrata GN=... [more]
YKT6_YEAST3.236e-3947.43Synaptobrevin homolog YKT6 OS=Saccharomyces cerevi... [more]
YKT6_DEBHA9.415e-3944.97Synaptobrevin homolog YKT6 OS=Debaryomyces hanseni... [more]
YKT6_KLULA1.606e-3847.09Synaptobrevin homolog YKT6 OS=Kluyveromyces lactis... [more]
YKT6_YARLI2.097e-3846.03Synaptobrevin homolog YKT6 OS=Yarrowia lipolytica ... [more]
YKT6_BOVIN2.835e-3545.74Synaptobrevin homolog YKT6 OS=Bos taurus GN=YKT6 P... [more]

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Properties
Property NameValue
Genbank descriptionC31401C06EF CTVClemen1 Citrus clementina cDNA clone C31401C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875647 ID=FC875647; Name=FC875647; organism=Citrus clementina; type=EST; length=697bp
GACTATGTGTCTCCTATCCGAATAATCAAAGCTCGATCAAAAAAAACATA
AAAACAATTTTTATTTTTTTCTCTTTTCAAAAACCAAACGACGCCGAATC
AGACGAACCGAACAACTTTCACAGCAGGAGGAGGATGAAGATCACGGCGT
TACTGGTTTTGAAGTGCAACCCGGACGGATCGGATCCGGTTGTGTTAGCG
ACCGCCATGGACGTTAGCCATTTCGGTTACTTTCAACGATCCAGCGTTAA
GGAGTTCATCCTCTTCGCCGCTCGCACTGTCGGTAAACGGACTCCGCCCG
GCCAGCGCCAGTCCGTCCAACACGAAGAGTACAAGGTGCATTCTTATAAC
AGGAATGGACTTTGCGCAATGGGATTCATGGATGATCATTATCCAGTGCG
AAGCTCATTCTCTCTTCTCAACCAGGTGCTAGATGAGTATCAGAAAAATT
TTGGTGAATCATGGAGGACTGCACAGGCAGACAACATGCAACCGTGGCCT
TATCTAAATGAAGCTTTGAACAAATATCAGGACCCAGCGGAGGCTGATAA
GCTGTTGAAAATTCAGAGGGAATTGGATGAAACAAAGATTATCCTTCATA
AAACTATCGATAGTGTACTTGCACGGGGTGAAAAGCTGGACAGTTTAGTT
GAGAAGAGTTCAGATCTCAGTGCAGCTTCGCAGATGTTCTACNAGCA
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