FC875650

Overview
NameFC875650
Unique NameFC875650
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length560
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875650_ssr6 microsatellite FC875650_ssr6:6..20. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9703 contig Ccv1_Contig9703:14..574. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875650 vs. ExPASy Swiss-Prot
Match: MT3_CARPA (Metallothionein-like protein type 3 OS=Carica papaya PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.243e-23
Identity = 46/65 (70.77%), Postives = 54/65 (83.08%), Query Frame = 3
Query:   84 MSDTCGNCDCADRSQCVKKGSSYAADFVETDMSFVSTVVMDVQAAGTEGDCKCGPTCACVNCTCG 278
            MSDTCGNCDCAD++QCVKKGSSY AD +ET+ S + TVVMD  AA  +G CKCGP+C+C NCTCG
Sbjct:    1 MSDTCGNCDCADKTQCVKKGSSYTADIIETEKS-IMTVVMDAPAAENDGKCKCGPSCSCTNCTCG 64          
BLAST of FC875650 vs. ExPASy Swiss-Prot
Match: MT3_ACTDE (Metallothionein-like protein type 3 OS=Actinidia deliciosa GN=pKIWI503 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.426e-19
Identity = 43/64 (67.19%), Postives = 48/64 (75.00%), Query Frame = 3
Query:   84 MSDTCGNCDCADRSQCVKKGSSYAADFVETDMSFVSTVVMDVQAAGTEGDCKCGPTCACVNCTC 275
            MSD CGNCDCAD SQCVKKG+S   D VETD S++  VVM V AA + G CKCG +C CVNCTC
Sbjct:    1 MSDKCGNCDCADSSQCVKKGNSI--DIVETDKSYIEDVVMGVPAAESGGKCKCGTSCPCVNCTC 62          
BLAST of FC875650 vs. ExPASy Swiss-Prot
Match: MT3_MUSAC (Metallothionein-like protein type 3 OS=Musa acuminata PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.404e-19
Identity = 37/63 (58.73%), Postives = 47/63 (74.60%), Query Frame = 3
Query:   93 TCGNCDCADRSQCVKKGSSYAADFVETDMSFVSTVVMDVQAAGTEGDCKCGPTCACVNCTCGS 281
            TCGNCDC D+SQCVKKG+SY  D VET+ S+V  V++  +AA  +G CKCG  CAC +C CG+
Sbjct:    3 TCGNCDCVDKSQCVKKGNSYGIDIVETEKSYVDEVIVAAEAAEHDGKCKCGAACACTDCKCGN 65          
BLAST of FC875650 vs. ExPASy Swiss-Prot
Match: MT3_PRUAV (Metallothionein-like protein 1 OS=Prunus avium GN=MT1 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.127e-16
Identity = 36/64 (56.25%), Postives = 44/64 (68.75%), Query Frame = 3
Query:   84 MSDTCGNCDCADRSQCVKKGSSYAADFVETDMSFVSTVVMDVQAAGTEGDCKCGPTCACVNCTC 275
            MS  C NCDC+D SQC KKG S+    VET+   + TV+MD  AA   G+CKCGP+CACV+C C
Sbjct:    1 MSSKCSNCDCSDSSQCTKKGYSFDLVIVETENRSMDTVIMDAPAAENGGNCKCGPSCACVDCKC 64          
BLAST of FC875650 vs. ExPASy Swiss-Prot
Match: MT3_MALDO (Metallothionein-like protein type 3 OS=Malus domestica GN=MT2 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.472e-16
Identity = 37/65 (56.92%), Postives = 45/65 (69.23%), Query Frame = 3
Query:   84 MSDTCGNCDCADRSQCVKKGSSYAADFVETDMSFVSTVVMDVQAAGTEGDCKCGPTCACVNCTCG 278
            MS  C NCDCAD +QCVKKG+SY    VET+   + TV +D  AA  +G CKCG  C+CV+CTCG
Sbjct:    1 MSGKCDNCDCADSTQCVKKGNSYDLVIVETENRSMDTVFVDAPAAEHDGKCKCGTGCSCVSCTCG 65          
BLAST of FC875650 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSJ (Metallothionein-like protein 3A OS=Oryza sativa subsp. japonica GN=MT3A PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.775e-15
Identity = 38/66 (57.58%), Postives = 44/66 (66.67%), Query Frame = 3
Query:   84 MSDTCGNCDCADRSQCVKKGSSYAADFVETDMSFVSTVVMDVQAAGTE-GDCKCGPTCACVNCTCG 278
            MSD CGNCDCAD+SQCVKKG+SY    VE + S    V     AAG E G CKCG +C+C +C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFEEV-----AAGEENGGCKCGTSCSCTDCKCG 61          
BLAST of FC875650 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSI (Metallothionein-like protein 3A OS=Oryza sativa subsp. indica GN=MT3A PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.775e-15
Identity = 38/66 (57.58%), Postives = 44/66 (66.67%), Query Frame = 3
Query:   84 MSDTCGNCDCADRSQCVKKGSSYAADFVETDMSFVSTVVMDVQAAGTE-GDCKCGPTCACVNCTCG 278
            MSD CGNCDCAD+SQCVKKG+SY    VE + S    V     AAG E G CKCG +C+C +C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFEEV-----AAGEENGGCKCGTSCSCTDCKCG 61          
BLAST of FC875650 vs. ExPASy Swiss-Prot
Match: MT3B_ORYSJ (Metallothionein-like protein 3B OS=Oryza sativa subsp. japonica GN=MT3B PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.431e-13
Identity = 32/65 (49.23%), Postives = 40/65 (61.54%), Query Frame = 3
Query:   84 MSDTCGNCDCADRSQCVKKGSSYAADFVETDMSFVSTVVMDVQAAGTEGDCKCGPTCACVNCTCG 278
            MSD CGNCDCAD+SQCVKKG+SY    V+ + S    +  +V     +G CKC   C+C  C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVDAEKSHFE-MAEEVGYEENDGKCKCTTGCSCAGCNCG 64          
BLAST of FC875650 vs. ExPASy Swiss-Prot
Match: MT3B_ORYSI (Metallothionein-like protein 3B OS=Oryza sativa subsp. indica GN=MT3B PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.684e-12
Identity = 31/65 (47.69%), Postives = 40/65 (61.54%), Query Frame = 3
Query:   84 MSDTCGNCDCADRSQCVKKGSSYAADFVETDMSFVSTVVMDVQAAGTEGDCKCGPTCACVNCTCG 278
            MSD CG+CDCAD+SQCVKKG+SY    V+ + S    +  +V     +G CKC   C+C  C CG
Sbjct:    1 MSDKCGHCDCADKSQCVKKGTSYGVVIVDAEKSHFE-MAEEVGYEENDGKCKCTTGCSCAGCNCG 64          
The following BLAST results are available for this feature:
BLAST of FC875650 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
MT3_CARPA1.243e-2370.77Metallothionein-like protein type 3 OS=Carica papa... [more]
MT3_ACTDE2.426e-1967.19Metallothionein-like protein type 3 OS=Actinidia d... [more]
MT3_MUSAC5.404e-1958.73Metallothionein-like protein type 3 OS=Musa acumin... [more]
MT3_PRUAV1.127e-1656.25Metallothionein-like protein 1 OS=Prunus avium GN=... [more]
MT3_MALDO1.472e-1656.92Metallothionein-like protein type 3 OS=Malus domes... [more]
MT3A_ORYSJ2.775e-1557.58Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3A_ORYSI2.775e-1557.58Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3B_ORYSJ4.431e-1349.23Metallothionein-like protein 3B OS=Oryza sativa su... [more]
MT3B_ORYSI1.684e-1247.69Metallothionein-like protein 3B OS=Oryza sativa su... [more]
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Properties
Property NameValue
Genbank descriptionC31401C09EF CTVClemen1 Citrus clementina cDNA clone C31401C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875650 ID=FC875650; Name=FC875650; organism=Citrus clementina; type=EST; length=560bp
GATCCAGCAAAGCAAAGCAAGTTTCGTACAATAAAGAGCCCTCTATTTCC
AGTTTTAAGTTCCAAGTTCTAAGCTCAATCAACATGTCGGACACCTGCGG
CAACTGCGACTGCGCTGACAGGAGCCAGTGTGTGAAGAAGGGAAGCAGCT
ATGCTGCTGATTTTGTGGAGACTGACATGAGCTTTGTCAGCACCGTTGTC
ATGGACGTTCAGGCTGCTGGGACTGAAGGTGACTGCAAGTGCGGCCCCAC
CTGCGCTTGTGTGAACTGCACTTGTGGTAGTCACTAATAAGCAAAACACA
TGCAGCAACAAATAAGAAGCTGCAAGTGTGCCTAAATATTGTGGGGGTTA
AGAATAATGTAAGGGTGATTAAAAAAAAAAAAGAAAAATTCTCTGCTTCG
TTTTTATGATGGTCTACTACCAGTGTGCGGAGTGATGTGCGTGTTGTGTC
GCCCATCACTCGTAATGTTTTGTGTTTCCTTCTTCATAATCATGTAATAT
ATGGCCATGGCCATGACGGTGGCCTTGTGTGGTTTAATTTTAATGTATTA
TTGTTAGTCT
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