FC875653

Overview
NameFC875653
Unique NameFC875653
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length653
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14404 contig Ccv1_Contig14404:82..734. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875653 vs. ExPASy Swiss-Prot
Match: GRSF1_MOUSE (G-rich sequence factor 1 OS=Mus musculus GN=Grsf1 PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.001e-15
Identity = 55/171 (32.16%), Postives = 78/171 (45.61%), Query Frame = 2
Query:  206 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSP-----------------------------HRSIPRAKSHDEGKDSAVHTGIL------RLRGLPFSAGKDDIMDFF 607
            VVRLRGLP+ C E D+ +FF GL+IVD+ FV  ++  + TGEA+     P   + AL ++R+ +G RY+E+F S+R E    + +        SP                              + I   K   E    AV  G L       +RGLPF A   DI++FF
Sbjct:  250 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVRTHVGSHKGKKMTSSPPTKYITEPEVVFEEHEVNEDIRPMTAFESDKEIELPKEMSEKLPEAVDFGTLPSLHFVHMRGLPFQANAQDIINFF 420          
BLAST of FC875653 vs. ExPASy Swiss-Prot
Match: GRSF1_HUMAN (G-rich sequence factor 1 OS=Homo sapiens GN=GRSF1 PE=1 SV=3)

HSP 1 Score: 81.6481 bits (200), Expect = 3.803e-15
Identity = 54/173 (31.21%), Postives = 83/173 (47.98%), Query Frame = 2
Query:  206 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEY------YKA-----------------------IANEVSDVRGGSPHRSIPRAK--------SHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF 607
            VVRLRGLP+ C E D+ +FF GL+IVD+ FV  ++  + TGEA+     P   + AL ++R+ +G RY+E+F S+R E       YK                        +  ++  +      + I   K        + D G  S++H   + +RGLPF A   DI++FF
Sbjct:  251 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVRTHVGSYKGKKIASFPTAKYITEPEMVFEEHEVNEDIQPMTAFESEKEIELPKEVPEKLPEAADFGTTSSLH--FVHMRGLPFQANAQDIINFF 421          
BLAST of FC875653 vs. ExPASy Swiss-Prot
Match: ESRP2_RAT (Epithelial splicing regulatory protein 2 OS=Rattus norvegicus GN=Esrp2 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.204e-14
Identity = 51/136 (37.50%), Postives = 72/136 (52.94%), Query Frame = 2
Query:  206 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDF 604
            VVR RGLP+  ++ DVA FF GL+I      L ++   +  GEA        Q D ALQR++ +MG RY+EV+++  +E+ K           G     + R  S ++         ILRLRGLPFSAG  D++DF
Sbjct:  247 VVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFEDSEQRDLALQRHKHHMGVRYIEVYKATGEEFVKI---------AGGTSLEVARFLSRED-------QVILRLRGLPFSAGPADVLDF 366          
BLAST of FC875653 vs. ExPASy Swiss-Prot
Match: HNRPF_MACFA (Heterogeneous nuclear ribonucleoprotein F OS=Macaca fascicularis GN=HNRNPF PE=2 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 2.087e-13
Identity = 52/154 (33.77%), Postives = 79/154 (51.30%), Query Frame = 2
Query:  206 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMN 652
            VV+LRGLP+ C+  DV  F     I D    V F++ +  + +GEAF  LG    V  AL+++R++MG RY+EVF+S R E    + +                  S     DSA + G +RLRGLPF   K++I+ FF    +  + I + ++
Sbjct:   12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKH------------------SGPNSADSA-NDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVD 146          
BLAST of FC875653 vs. ExPASy Swiss-Prot
Match: HNRPF_HUMAN (Heterogeneous nuclear ribonucleoprotein F OS=Homo sapiens GN=HNRNPF PE=1 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 2.087e-13
Identity = 52/154 (33.77%), Postives = 79/154 (51.30%), Query Frame = 2
Query:  206 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMN 652
            VV+LRGLP+ C+  DV  F     I D    V F++ +  + +GEAF  LG    V  AL+++R++MG RY+EVF+S R E    + +                  S     DSA + G +RLRGLPF   K++I+ FF    +  + I + ++
Sbjct:   12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKH------------------SGPNSADSA-NDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVD 146          
BLAST of FC875653 vs. ExPASy Swiss-Prot
Match: ESRP2_MOUSE (Epithelial splicing regulatory protein 2 OS=Mus musculus GN=Esrp2 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.725e-13
Identity = 50/136 (36.76%), Postives = 71/136 (52.21%), Query Frame = 2
Query:  206 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDF 604
            VVR RGLP+  ++ DVA FF GL+I      L ++   +  GEA        Q D ALQR++ +MG RY+EV+++  +E+ K           G     + R  S ++         ILRLRGLPFSAG  D++ F
Sbjct:  248 VVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQRHKHHMGVRYIEVYKATGEEFVKI---------AGGTSLEVARFLSRED-------QVILRLRGLPFSAGPTDVLGF 367          
BLAST of FC875653 vs. ExPASy Swiss-Prot
Match: ESRP2_HUMAN (Epithelial splicing regulatory protein 2 OS=Homo sapiens GN=ESRP2 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.559e-13
Identity = 49/136 (36.03%), Postives = 71/136 (52.21%), Query Frame = 2
Query:  206 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDF 604
            VVR RGLP+  ++ DVA FF GL++      L ++   +  GEA        Q D ALQR++ +MG RY+EV+++  +E+ K           G     + R  S ++         ILRLRGLPFSAG  D++ F
Sbjct:  258 VVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQRHKHHMGVRYIEVYKATGEEFVKI---------AGGTSLEVARFLSRED-------QVILRLRGLPFSAGPTDVLGF 377          
BLAST of FC875653 vs. ExPASy Swiss-Prot
Match: HNRPF_RAT (Heterogeneous nuclear ribonucleoprotein F OS=Rattus norvegicus GN=Hnrnpf PE=1 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 2.307e-12
Identity = 51/154 (33.12%), Postives = 78/154 (50.65%), Query Frame = 2
Query:  206 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMN 652
            VV+LRGLP+ C+  DV  F     I D    V F++ +  + +GEAF  L     V  AL+++R++MG RY+EVF+S R E    + +                  S     DSA + G +RLRGLPF   K++I+ FF    +  + I + ++
Sbjct:   12 VVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVFKSHRTEMDWVLKH------------------SGPNSADSA-NDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVD 146          
BLAST of FC875653 vs. ExPASy Swiss-Prot
Match: HNRPF_MOUSE (Heterogeneous nuclear ribonucleoprotein F OS=Mus musculus GN=Hnrnpf PE=1 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 2.307e-12
Identity = 51/154 (33.12%), Postives = 78/154 (50.65%), Query Frame = 2
Query:  206 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMN 652
            VV+LRGLP+ C+  DV  F     I D    V F++ +  + +GEAF  L     V  AL+++R++MG RY+EVF+S R E    + +                  S     DSA + G +RLRGLPF   K++I+ FF    +  + I + ++
Sbjct:   12 VVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVFKSHRTEMDWVLKH------------------SGPNSADSA-NDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVD 146          
BLAST of FC875653 vs. ExPASy Swiss-Prot
Match: RBM12_MOUSE (RNA-binding protein 12 OS=Mus musculus GN=Rbm12 PE=1 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 3.935e-12
Identity = 65/195 (33.33%), Postives = 91/195 (46.67%), Query Frame = 2
Query:  107 DQGPSFYGT-PPSSSFMYNPPPAYGYVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGL--DIVDVLFVH--KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA---IANEVSDVRGGSPH---RSIPRAKSHDEGKDSAVHTG-----ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHI 643
            +  P F G   P +S   N   +   +   P    V + G+PF   E DV EFFHGL  D V +L  H  +NN   G        P     AL+RNR  M +RYVEV  +  +++  A   I  + S    G  H   +++PR+KS    K S   +       + L+GLPF A    ++DFFK   + EDSI+I
Sbjct:  271 NMNPVFLGPLNPVNSIQMNSQSSVKSLPINPDDLYVSVHGMPFSAMENDVREFFHGLRVDAVHLLKDHVGRNN---GNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQSMGPSGQAHPPPQTLPRSKSPSGQKRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYI 462          
The following BLAST results are available for this feature:
BLAST of FC875653 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
GRSF1_MOUSE1.001e-1532.16G-rich sequence factor 1 OS=Mus musculus GN=Grsf1 ... [more]
GRSF1_HUMAN3.803e-1531.21G-rich sequence factor 1 OS=Homo sapiens GN=GRSF1 ... [more]
ESRP2_RAT4.204e-1437.50Epithelial splicing regulatory protein 2 OS=Rattus... [more]
HNRPF_MACFA2.087e-1333.77Heterogeneous nuclear ribonucleoprotein F OS=Macac... [more]
HNRPF_HUMAN2.087e-1333.77Heterogeneous nuclear ribonucleoprotein F OS=Homo ... [more]
ESRP2_MOUSE2.725e-1336.76Epithelial splicing regulatory protein 2 OS=Mus mu... [more]
ESRP2_HUMAN3.559e-1336.03Epithelial splicing regulatory protein 2 OS=Homo s... [more]
HNRPF_RAT2.307e-1233.12Heterogeneous nuclear ribonucleoprotein F OS=Rattu... [more]
HNRPF_MOUSE2.307e-1233.12Heterogeneous nuclear ribonucleoprotein F OS=Mus m... [more]
RBM12_MOUSE3.935e-1233.33RNA-binding protein 12 OS=Mus musculus GN=Rbm12 PE... [more]

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Properties
Property NameValue
Genbank descriptionC31401D01EF CTVClemen1 Citrus clementina cDNA clone C31401D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875653 ID=FC875653; Name=FC875653; organism=Citrus clementina; type=EST; length=653bp
ATAGCTCACGNGCTCAACTATTTCAAATTTAAGAATGTTCTACAGAGGCA
AGTTTGCTGAGGGTGCTGATGGGCGTGAAATGGGGGCAAAGCGTCAACGG
TTGATTGATCAGGGACCTTCATTTTATGGAACTCCCCCAAGTTCAAGTTT
TATGTACAATCCACCACCAGCTTATGGGTACGTTAGCCAACCTCCACCTT
TCCCAGTTGTCCGACTTCGCGGTCTTCCCTTTGATTGTACAGAAGTTGAT
GTTGCTGAGTTTTTCCATGGTCTAGACATAGTCGATGTTCTTTTTGTCCA
TAAGAACAACAAATTTACAGGAGAAGCTTTTTGTGTGCTGGGGTATCCTC
TTCAAGTCGATTTTGCCCTGCAGAGGAATAGGCAGAACATGGGAAGGAGG
TATGTTGAGGTTTTCAGAAGTAAGAGGCAGGAATATTATAAGGCAATAGC
AAATGAAGTTTCTGATGTTCGTGGTGGTTCACCACATAGGAGTATCCCTA
GGGCTAAATCTCATGATGAGGGGAAGGATTCAGCTGTACATACAGGGATA
CTGCGATTGAGAGGATTGCCATTTTCAGCAGGCAAGGATGACATAATGGA
TTTCTTTAAAGATTTTGTGTTGTCGGAAGACTCGATTCATATTACTATGA
ATT
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