FC875709

Overview
NameFC875709
Unique NameFC875709
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length631
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875709 vs. ExPASy Swiss-Prot
Match: ECA4_ARATH (Calcium-transporting ATPase 4, endoplasmic reticulum-type OS=Arabidopsis thaliana GN=ECA4 PE=2 SV=2)

HSP 1 Score: 304.679 bits (779), Expect = 2.551e-82
Identity = 142/174 (81.61%), Postives = 159/174 (91.38%), Query Frame = 3
Query:    3 VGIATVGVFIIWYTHGSFLGINLIGDGHSLVTYSQLTNWGQCPSWGNFTVSPFTAGNQVFTFNDNPCDYFHGGKVKAMTLSLSVLVAIEMFNSLNALSEDGSLLTMPPWVNPWLLLAMSVSFGLHFLILYVPFLAQIFGIVPLSFNEWLLVLAIAFPVVLIDEVLKFVGRCTNG 524
            VG+ATVGVFIIWYTH SF+GI+L  DGHSLV+YSQL +WGQC SW  F VSPFTAG+Q F+F+ NPCDYF  GK+KA TLSLSVLVAIEMFNSLNALSEDGSL+TMPPWVNPWLLLAM+VSFGLHF+ILYVPFLAQ+FGIVPLS NEWLLVLA++ PV+LIDEVLKFVGRCT+G
Sbjct:  873 VGVATVGVFIIWYTHNSFMGIDLSQDGHSLVSYSQLAHWGQCSSWEGFKVSPFTAGSQTFSFDSNPCDYFQQGKIKASTLSLSVLVAIEMFNSLNALSEDGSLVTMPPWVNPWLLLAMAVSFGLHFVILYVPFLAQVFGIVPLSLNEWLLVLAVSLPVILIDEVLKFVGRCTSG 1046          
BLAST of FC875709 vs. ExPASy Swiss-Prot
Match: ECA1_ARATH (Calcium-transporting ATPase 1, endoplasmic reticulum-type OS=Arabidopsis thaliana GN=ECA1 PE=1 SV=2)

HSP 1 Score: 304.679 bits (779), Expect = 2.551e-82
Identity = 142/174 (81.61%), Postives = 159/174 (91.38%), Query Frame = 3
Query:    3 VGIATVGVFIIWYTHGSFLGINLIGDGHSLVTYSQLTNWGQCPSWGNFTVSPFTAGNQVFTFNDNPCDYFHGGKVKAMTLSLSVLVAIEMFNSLNALSEDGSLLTMPPWVNPWLLLAMSVSFGLHFLILYVPFLAQIFGIVPLSFNEWLLVLAIAFPVVLIDEVLKFVGRCTNG 524
            VG+ATVGVFIIWYTH SF+GI+L  DGHSLV+YSQL +WGQC SW  F VSPFTAG+Q F+F+ NPCDYF  GK+KA TLSLSVLVAIEMFNSLNALSEDGSL+TMPPWVNPWLLLAM+VSFGLHF+ILYVPFLAQ+FGIVPLS NEWLLVLA++ PV+LIDEVLKFVGRCT+G
Sbjct:  873 VGVATVGVFIIWYTHSSFMGIDLSQDGHSLVSYSQLAHWGQCSSWEGFKVSPFTAGSQTFSFDSNPCDYFQQGKIKASTLSLSVLVAIEMFNSLNALSEDGSLVTMPPWVNPWLLLAMAVSFGLHFVILYVPFLAQVFGIVPLSLNEWLLVLAVSLPVILIDEVLKFVGRCTSG 1046          
BLAST of FC875709 vs. ExPASy Swiss-Prot
Match: ECAP_SOLLC (Calcium-transporting ATPase, endoplasmic reticulum-type OS=Solanum lycopersicum GN=LCA1 PE=2 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 3.456e-71
Identity = 128/170 (75.29%), Postives = 147/170 (86.47%), Query Frame = 3
Query:    3 VGIATVGVFIIWYTHGSFLGINLIGDGHSLVTYSQLTNWGQCPSWGNFTVSPFTAGNQVFTFNDNPCDYFHGGKVKAMTLSLSVLVAIEMFNSLNALSEDGSLLTMPPWVNPWLLLAMSVSFGLHFLILYVPFLAQIFGIVPLSFNEWLLVLAIAFPVVLIDEVLKFVGR 512
            VGIATVG+FI+WYT  SFLGIN++ DGH+LV  SQL NWG+C +W NFTVSPF AGN++ TF+D PC+YF  GKVKAMTLSLSVLVAIEMFNSLNALSED SL+ MPPW NPWLL+AMS+SF LH +ILYVPFLA IFGIVPLS  EWLLV+ ++ PV+LIDEVLKFVGR
Sbjct:  870 VGIATVGIFIVWYTQASFLGINIVSDGHTLVELSQLRNWGECSTWTNFTVSPFKAGNRLITFSD-PCEYFTVGKVKAMTLSLSVLVAIEMFNSLNALSEDNSLIKMPPWRNPWLLVAMSLSFALHSVILYVPFLADIFGIVPLSLYEWLLVILLSAPVILIDEVLKFVGR 1038          
BLAST of FC875709 vs. ExPASy Swiss-Prot
Match: ECA2_ARATH (Calcium-transporting ATPase 2, endoplasmic reticulum-type OS=Arabidopsis thaliana GN=ECA2 PE=2 SV=1)

HSP 1 Score: 261.151 bits (666), Expect = 3.235e-69
Identity = 121/174 (69.54%), Postives = 146/174 (83.91%), Query Frame = 3
Query:    3 VGIATVGVFIIWYTHGSFLGINLIGDGHSLVTYSQLTNWGQCPSWG-NFTVSPFTA--GNQVFTFNDNPCDYFHGGKVKAMTLSLSVLVAIEMFNSLNALSEDGSLLTMPPWVNPWLLLAMSVSFGLHFLILYVPFLAQIFGIVPLSFNEWLLVLAIAFPVVLIDEVLKFVGRC 515
            VG+ATVG+F++WYT  SFLGI+LI DGH+LV+++QL NW +C SWG NFT +P+T   G +   F +NPCDYF  GKVK MTLSL+VLVAIEMFNSLNALSED SLLTMPPW NPWLL+AM+VSF LH +ILYVPFLA +FGIVPLSF EW +V+ ++FPV+LIDE LKF+GRC
Sbjct:  869 VGVATVGIFVLWYTQASFLGISLISDGHTLVSFTQLQNWSECSSWGTNFTATPYTVAGGLRTIAFENNPCDYFTLGKVKPMTLSLTVLVAIEMFNSLNALSEDNSLLTMPPWRNPWLLVAMTVSFALHCVILYVPFLANVFGIVPLSFREWFVVILVSFPVILIDEALKFIGRC 1042          
BLAST of FC875709 vs. ExPASy Swiss-Prot
Match: ATC_PLAFK (Calcium-transporting ATPase OS=Plasmodium falciparum (isolate K1 / Thailand) GN=ATP6 PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 4.121e-40
Identity = 83/170 (48.82%), Postives = 114/170 (67.06%), Query Frame = 3
Query:    3 VGIATVGVFIIWYTHGSFLGINLIGDGHSLVTYSQLTNWGQCPSWGNFTVSPFTAGNQVFTFNDNPCDYFHGGKVKAMTLSLSVLVAIEMFNSLNALSEDGSLLTMPPWVNPWLLLAMSVSFGLHFLILYVPFLAQIFGIVPLSFNEWLLVLAIAFPVVLIDEVLKFVGR 512
            VGIATV +F+ W+            D H+L+ + QL+++ QC +W NF V      N+V+  +++ C YF  GK+KA TLSLSVLV IEMFN+LNALSE  SL  +PPW N +L+LA   S  LH LILY+P LA+IFG+VPLS  +W LV   +FPV+++DE++KF  +
Sbjct: 1056 VGIATVSIFVYWFLFYPD------SDMHTLINFYQLSHYNQCKAWNNFRV------NKVYDMSEDHCSYFSAGKIKASTLSLSVLVLIEMFNALNALSEYNSLFEIPPWRNMYLVLATIGSLLLHVLILYIPPLARIFGVVPLSAYDWFLVFLWSFPVIILDEIIKFYAK 1213          
BLAST of FC875709 vs. ExPASy Swiss-Prot
Match: AT2A1_MAKNI (Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 OS=Makaira nigricans GN=atp2a1 PE=2 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 5.583e-29
Identity = 76/170 (44.71%), Postives = 102/170 (60.00%), Query Frame = 3
Query:    3 VGIATVGVFIIWYTHGSFLGINLIGDGHSLVTYSQLTNWGQCPSWGNFTVSPFTAGNQVFTFNDNPCDYFHGGKVKAMTLSLSVLVAIEMFNSLNALSEDGSLLTMPPWVNPWLLLAMSVSFGLHFLILYVPFLAQIFGIVPLSFNEWLLVLAIAFPVVLIDEVLKFVGR 512
            VG ATVG    W+ + S             VTY QL+++ QC +            N+ FT  D  CD F       MT++LSVLV IEM N+LN+LSE+ SL+ MPPW N WL+ AM++S  LHF+I+YV  L  IF +  L+F++WL+V  ++FPV+LIDEVLKF  R
Sbjct:  841 VGAATVGGAAWWFLYDST---------GPAVTYYQLSHFMQCHNH-----------NEDFTGVD--CDIFEASP--PMTMALSVLVTIEMCNALNSLSENQSLIRMPPWSNLWLMAAMTLSMSLHFMIIYVDPLPMIFKLTHLTFDQWLMVFKLSFPVILIDEVLKFFAR 986          
BLAST of FC875709 vs. ExPASy Swiss-Prot
Match: ATC1_DROPS (Calcium-transporting ATPase sarcoplasmic/endoplasmic reticulum type OS=Drosophila pseudoobscura pseudoobscura GN=Ca-P60A PE=3 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 1.244e-28
Identity = 75/170 (44.12%), Postives = 99/170 (58.24%), Query Frame = 3
Query:    3 VGIATVGVFIIWYTHGSFLGINLIGDGHSLVTYSQLTNWGQCPSWGNFTVSPFTAGNQVFTFNDNPCDYFHGGKVKAMTLSLSVLVAIEMFNSLNALSEDGSLLTMPPWVNPWLLLAMSVSFGLHFLILYVPFLAQIFGIVPLSFNEWLLVLAIAFPVVLIDEVLKFVGR 512
            VG ATVG    W+   S        +G  L TY QLT+   C   G+              F    C  F     KAMT++LSVLV IEM N++N+LSE+ SL++MPPW N WL+ +M++SF LHF+ILYV  L+ +F + PLS  EW+ V+  + PVVL+DE LKFV R
Sbjct:  844 VGAATVGAAAWWFIASS--------EGPGL-TYWQLTHHLSCLGGGD-------------EFKGVDCKIF--SDPKAMTMALSVLVTIEMLNAMNSLSENQSLISMPPWCNLWLIGSMALSFTLHFVILYVDVLSTVFQVTPLSAEEWITVMKFSIPVVLLDETLKFVAR 989          
BLAST of FC875709 vs. ExPASy Swiss-Prot
Match: AT2A1_CHICK (Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 OS=Gallus gallus GN=ATP2A1 PE=2 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 2.121e-28
Identity = 80/170 (47.06%), Postives = 99/170 (58.24%), Query Frame = 3
Query:    3 VGIATVGVFIIWYTHGSFLGINLIGDGHSLVTYSQLTNWGQCPSWGNFTVSPFTAGNQVFTFNDNPCDYFHGGKVKAMTLSLSVLVAIEMFNSLNALSEDGSLLTMPPWVNPWLLLAMSVSFGLHFLILYVPFLAQIFGIVPLSFNEWLLVLAIAFPVVLIDEVLKFVGR 512
            VG ATVG    W+ +          DG SL TY QLT++ QC           T  N  F   D  CD F       MT++LSVLV IEM N+LN+LSE+ SLL MPPWVN WL+ ++ +S  LHF+ILYV  L  IF +  L    WL+VL I+FPV+L+DE LKFV R
Sbjct:  844 VGAATVGAAAWWFLYAE--------DGPSL-TYHQLTHFMQC-----------THHNAEFEGVD--CDIFESPV--PMTMALSVLVTIEMCNALNSLSENQSLLRMPPWVNIWLVGSICLSMSLHFVILYVDPLPMIFKLTHLDLAHWLVVLRISFPVILLDEALKFVAR 989          
BLAST of FC875709 vs. ExPASy Swiss-Prot
Match: ATC1_DROME (Calcium-transporting ATPase sarcoplasmic/endoplasmic reticulum type OS=Drosophila melanogaster GN=Ca-P60A PE=1 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 4.726e-28
Identity = 72/170 (42.35%), Postives = 97/170 (57.06%), Query Frame = 3
Query:    3 VGIATVGVFIIWYTHGSFLGINLIGDGHSLVTYSQLTNWGQCPSWGNFTVSPFTAGNQVFTFNDNPCDYFHGGKVKAMTLSLSVLVAIEMFNSLNALSEDGSLLTMPPWVNPWLLLAMSVSFGLHFLILYVPFLAQIFGIVPLSFNEWLLVLAIAFPVVLIDEVLKFVGR 512
            VG ATVG    W+         +  D    ++Y QLT+   C   G+              F    C  F      AMT++LSVLV IEM N++N+LSE+ SL+TMPPW N WL+ +M++SF LHF+ILYV  L+ +F + PLS  EW+ V+  + PVVL+DE LKFV R
Sbjct:  844 VGAATVGAAAWWF---------VFSDEGPKLSYWQLTHHLSCLGGGD-------------EFKGVDCKIF--SDPHAMTMALSVLVTIEMLNAMNSLSENQSLITMPPWCNLWLIGSMALSFTLHFVILYVDVLSTVFQVTPLSAEEWITVMKFSIPVVLLDETLKFVAR 989          
BLAST of FC875709 vs. ExPASy Swiss-Prot
Match: ATC_ARTSF (Calcium-transporting ATPase sarcoplasmic/endoplasmic reticulum type OS=Artemia sanfranciscana PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.053e-27
Identity = 75/170 (44.12%), Postives = 102/170 (60.00%), Query Frame = 3
Query:    3 VGIATVGVFIIWYTHGSFLGINLIGDGHSLVTYSQLTNWGQCPSWGNFTVSPFTAGNQVFTFNDNPCDYFHGGKVKAMTLSLSVLVAIEMFNSLNALSEDGSLLTMPPWVNPWLLLAMSVSFGLHFLILYVPFLAQIFGIVPLSFNEWLLVLAIAFPVVLIDEVLKFVGR 512
            VG ATVG    W+       ++  G G   + + QL++  QC           T  N+ F   D  C+ F       MT++LSVLV IEM N++N+LSE+ SLL MPPW N WL+ A+ +S  LHF+ILYV  L+ +F I PL+  EW++VL I+FPV+L+DEVLKFV R
Sbjct:  848 VGAATVGAAAHWFM------MSPTGPG---LNFYQLSHHLQC-----------TPENEYFEGID--CEIF--SDPHPMTMALSVLVTIEMLNAINSLSENQSLLVMPPWSNIWLISAICLSMTLHFVILYVEILSTVFQICPLTLTEWIVVLKISFPVLLLDEVLKFVAR 993          
The following BLAST results are available for this feature:
BLAST of FC875709 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
ECA4_ARATH2.551e-8281.61Calcium-transporting ATPase 4, endoplasmic reticul... [more]
ECA1_ARATH2.551e-8281.61Calcium-transporting ATPase 1, endoplasmic reticul... [more]
ECAP_SOLLC3.456e-7175.29Calcium-transporting ATPase, endoplasmic reticulum... [more]
ECA2_ARATH3.235e-6969.54Calcium-transporting ATPase 2, endoplasmic reticul... [more]
ATC_PLAFK4.121e-4048.82Calcium-transporting ATPase OS=Plasmodium falcipar... [more]
AT2A1_MAKNI5.583e-2944.71Sarcoplasmic/endoplasmic reticulum calcium ATPase ... [more]
ATC1_DROPS1.244e-2844.12Calcium-transporting ATPase sarcoplasmic/endoplasm... [more]
AT2A1_CHICK2.121e-2847.06Sarcoplasmic/endoplasmic reticulum calcium ATPase ... [more]
ATC1_DROME4.726e-2842.35Calcium-transporting ATPase sarcoplasmic/endoplasm... [more]
ATC_ARTSF1.053e-2744.12Calcium-transporting ATPase sarcoplasmic/endoplasm... [more]

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Properties
Property NameValue
Genbank descriptionC31401H11EF CTVClemen1 Citrus clementina cDNA clone C31401H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875709 ID=FC875709; Name=FC875709; organism=Citrus clementina; type=EST; length=631bp
ATGTTGGAATAGCAACGGTTGGTGTTTTCATCATTTGGTATACACATGGT
TCTTTCTTGGGCATCAATCTCATTGGCGACGGTCACAGCCTTGTCACATA
CTCCCAGCTCACTAACTGGGGCCAGTGCCCATCCTGGGGGAATTTTACCG
TTTCTCCCTTCACAGCTGGTAATCAGGTTTTCACATTCAACGATAACCCT
TGTGATTATTTCCATGGCGGCAAAGTAAAAGCAATGACACTTTCTCTTTC
TGTGCTGGTCGCCATTGAAATGTTTAACTCCCTCAATGCCCTCTCTGAGG
ATGGAAGCCTATTGACAATGCCCCCATGGGTCAACCCTTGGCTCCTTTTG
GCTATGTCCGTCTCCTTTGGCCTACACTTCTTGATCCTCTACGTGCCGTT
CCTAGCTCAAATTTTTGGTATCGTGCCCTTAAGCTTTAACGAATGGCTCT
TGGTATTGGCCATTGCATTCCCTGTGGTATTGATCGATGAGGTTCTAAAG
TTTGTCGGCAGATGTACAAATGGATCTCAAACATCAAGAAGAAAATCTTC
AAAACCAAAATCAGAGTGAGTGACCGGCAAATGAAGTGCCATCAATTGGT
TAGTACCATTCCAATGGTCCTCTCGCACACT
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