FC876184

Overview
NameFC876184
Unique NameFC876184
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length671
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9382 contig Ccv1_Contig9382:1..671. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876184 vs. ExPASy Swiss-Prot
Match: AB7G_ARATH (ABC transporter G family member 7 OS=Arabidopsis thaliana GN=ABCG7 PE=1 SV=1)

HSP 1 Score: 258.07 bits (658), Expect = 3.093e-68
Identity = 140/194 (72.16%), Postives = 155/194 (79.90%), Query Frame = 2
Query:   86 MVNFGGNKVGQVVAGIGGNGVGQVLAAVAVSLLFRLFTGPGPALVTDDDSAYGDDDERNDVAEANGDGEAPVDGKVFPVTIR*QNITCSLSDKSSKSVRFLLNNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILS 667
            M  FGG  +  VV+GIGGNGVG  LAAVA +LL RLF GPG AL+ +D++    +D+  +  +  GD        + PVTIR +NITCSLSDKSSKSVRFLL NVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQL  SPRLHLSGLLEVNGKPSS+KAYK A+VRQEDLFFSQLTVRETLS AAELQLPEI S
Sbjct:    1 MAPFGGKSLADVVSGIGGNGVGGALAAVAAALLVRLFAGPGIALLPEDEA----EDDYAETEDGGGDS-------IRPVTIRWRNITCSLSDKSSKSVRFLLKNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLSLSPRLHLSGLLEVNGKPSSSKAYKLAFVRQEDLFFSQLTVRETLSFAAELQLPEISS 183          
BLAST of FC876184 vs. ExPASy Swiss-Prot
Match: AB27G_ARATH (ABC transporter G family member 27 OS=Arabidopsis thaliana GN=ABCG27 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.192e-19
Identity = 62/172 (36.05%), Postives = 97/172 (56.40%), Query Frame = 2
Query:  161 AAVAVSLLFRLFTGPGPALVTDDDSAYGDDDERNDVAEANGDGEAPVDGKVFPVTIR*QNITCSLSDK--SSKSVRFLLNNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKP-SSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILS 667
            A++ +S  F  FT P   ++  +  +  +DD   D+  A            FP+ ++  +IT  ++ K  +S S + +LN +SG A PG LLA+MGPSGSGKTTLLN L G+     + ++ G +  N KP S +   +  +V Q+D+ F  LTV+ETL+  A L+LP+ L+
Sbjct:   92 ASLGLSFSFTGFTVPHEEIIASERCS--NDDILEDIEAATSSVVKFQAEPTFPIYLKFIDITYKVTTKGMTSSSEKSILNGISGSAYPGELLALMGPSGSGKTTLLNALGGRF---NQQNIGGSVSYNDKPYSKHLKTRIGFVTQDDVLFPHLTVKETLTYTALLRLPKTLT 258          
BLAST of FC876184 vs. ExPASy Swiss-Prot
Match: AB22G_ARATH (ABC transporter G family member 22 OS=Arabidopsis thaliana GN=ABCG22 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.230e-17
Identity = 59/172 (34.30%), Postives = 92/172 (53.49%), Query Frame = 2
Query:  161 AAVAVSLLFRLFTGPGPALVTDDDSAYGDDDERNDVAEANGDGEAPVDGKVFPVTIR*QNITCSLSDK--SSKSVRFLLNNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKP-SSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILS 667
            A++ +S  F  F  P   +   D   + DD+   +  EA             P+ ++ +++T  +  K  +S   + +L  +SG   PG +LA+MGPSGSGKTTLL++LAG++  S      G +  N KP S     K  +V Q+D+ F  LTV+ETL+ AA L+LP+ L+
Sbjct:  104 ASLGLSFSFTGFAMPPEEI--SDSKPFSDDEMIPEDIEAGKKKPKFQAEPTLPIFLKFRDVTYKVVIKKLTSSVEKEILTGISGSVNPGEVLALMGPSGSGKTTLLSLLAGRISQS---STGGSVTYNDKPYSKYLKSKIGFVTQDDVLFPHLTVKETLTYAARLRLPKTLT 270          
BLAST of FC876184 vs. ExPASy Swiss-Prot
Match: AB21G_ARATH (ABC transporter G family member 21 OS=Arabidopsis thaliana GN=ABCG21 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.233e-16
Identity = 55/153 (35.95%), Postives = 84/153 (54.90%), Query Frame = 2
Query:  245 DDDERNDVAEANGDGEAPVDGKVFPVTIR*QNITCSLSDKSSKSV-----------RFLLNNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKP-SSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILS 667
            DDD  +D         + +   + P+ ++ + +T S+  ++ K             R +L  VSG  KPG LLA++GPSGSGKTTL+  LAG+L       LSG +  NG+P +S+   K  +V Q+D+ +  LTV ETL+  A L+LP+ L+
Sbjct:   41 DDDNDHDGPSHQSRQSSVLRQSLRPIILKFEELTYSIKSQTGKGSYWFGSQEPKPNRLVLKCVSGIVKPGELLAMLGPSGSGKTTLVTALAGRLQGK----LSGTVSYNGEPFTSSVKRKTGFVTQDDVLYPHLTVMETLTYTALLRLPKELT 189          
BLAST of FC876184 vs. ExPASy Swiss-Prot
Match: AB17G_ARATH (ABC transporter G family member 17 OS=Arabidopsis thaliana GN=ABCG17 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.233e-16
Identity = 48/103 (46.60%), Postives = 66/103 (64.08%), Query Frame = 2
Query:  365 SSKSVRFLLNNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKF--AYVRQEDLFFSQLTVRETLSLAAELQLPEILS 667
            S   ++ LLN ++GEAK G +LAI+G SG+GK+TL++ LAGQ+       L G + +NG+   ++  +   AYV QEDL F  LTV ETL  AAE +LP  LS
Sbjct:   44 SPAKIKTLLNGITGEAKEGEILAILGASGAGKSTLIDALAGQIAEG---SLKGTVTLNGEALQSRLLRVISAYVMQEDLLFPMLTVEETLMFAAEFRLPRSLS 143          
BLAST of FC876184 vs. ExPASy Swiss-Prot
Match: AB15G_ARATH (ABC transporter G family member 15 OS=Arabidopsis thaliana GN=ABCG15 PE=2 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.233e-16
Identity = 49/111 (44.14%), Postives = 74/111 (66.67%), Query Frame = 2
Query:  335 QNITCSLSDKSSKSVRFLLNNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILS 667
            +++T  + + S    R LL  ++G A+PGR++AIMGPSGSGK+TLL+ LAG+L  +  + ++G L +NGK +       AYV QED+    LTVRET++ +A L+LP  +S
Sbjct:   28 EDLTVVIPNFSDGPTRRLLQRLNGYAEPGRIMAIMGPSGSGKSTLLDSLAGRL--ARNVVMTGNLLLNGKKARLDYGLVAYVTQEDVLLGTLTVRETITYSAHLRLPSDMS 136          
BLAST of FC876184 vs. ExPASy Swiss-Prot
Match: AB13G_ARATH (ABC transporter G family member 13 OS=Arabidopsis thaliana GN=ABCG13 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.747e-16
Identity = 49/111 (44.14%), Postives = 72/111 (64.86%), Query Frame = 2
Query:  335 QNITCSLSDKSSKSVRFLLNNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILS 667
            +++T  + +    + + LLN V+G  +P R+LAIMGPSGSGK+TLL+ LAG+L  +  + +SG + VNGK         AYV QED+    LTVRE++S +A L+LP  L+
Sbjct:   13 EDLTVVIPNFGEGATKRLLNGVNGCGEPNRILAIMGPSGSGKSTLLDALAGRLAGN--VVMSGKVLVNGKKRRLDFGAAAYVTQEDVLLGTLTVRESISYSAHLRLPSKLT 121          
BLAST of FC876184 vs. ExPASy Swiss-Prot
Match: AB12G_ARATH (ABC transporter G family member 12 OS=Arabidopsis thaliana GN=ABCG12 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.686e-16
Identity = 48/111 (43.24%), Postives = 74/111 (66.67%), Query Frame = 2
Query:  335 QNITCSLSDKSSKSVRFLLNNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILS 667
            +++T  + + S    R LL+ ++G A+PGR++AIMGPSGSGK+TLL+ LAG+L  +  + ++G L +NGK +       AYV QED+    LTVRET++ +A L+L   L+
Sbjct:   27 EDLTVVIPNFSGGPTRRLLDGLNGHAEPGRIMAIMGPSGSGKSTLLDSLAGRL--ARNVIMTGNLLLNGKKARLDYGLVAYVTQEDILMGTLTVRETITYSAHLRLSSDLT 135          
BLAST of FC876184 vs. ExPASy Swiss-Prot
Match: WHITE_ANOGA (Protein white OS=Anopheles gambiae GN=w PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.038e-15
Identity = 53/125 (42.40%), Postives = 72/125 (57.60%), Query Frame = 2
Query:  287 GEAPVDGKVF-PVTIR*QNITCSLSDKSSKSVRFLLNNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKP--SSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQL 652
            GEAP DGK   P+  R +N  C+   K     + LL NV+G AK G LLA+MG SG+GKTTLLN LA +     ++  + +  +NG P  +     + AYV+Q+DLF   LT RE L   A L++
Sbjct:   82 GEAPTDGKPREPLCTRLRNC-CTRQRKDFNPRKHLLKNVTGVAKSGELLAVMGSSGAGKTTLLNALAFRSPPGVKISPNAVRALNGVPVNAEQLRARCAYVQQDDLFIPSLTTREHLLFQAMLRM 205          
BLAST of FC876184 vs. ExPASy Swiss-Prot
Match: AB6G_ARATH (ABC transporter G family member 6 OS=Arabidopsis thaliana GN=ABCG6 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.038e-15
Identity = 46/102 (45.10%), Postives = 65/102 (63.73%), Query Frame = 2
Query:  368 SKSVRFLLNNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYK--FAYVRQEDLFFSQLTVRETLSLAAELQLPEILS 667
            S   + LLN ++GEA+ G +LA++G SGSGK+TL++ LA ++       L G + +NG+  ++K  K   AYV Q+DL F  LTV ETL  AAE +LP  LS
Sbjct:  102 SSKTKTLLNGITGEARDGEILAVLGASGSGKSTLIDALANRIAKG---SLKGNVTLNGEVLNSKMQKAISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSLS 200          
The following BLAST results are available for this feature:
BLAST of FC876184 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
AB7G_ARATH3.093e-6872.16ABC transporter G family member 7 OS=Arabidopsis t... [more]
AB27G_ARATH1.192e-1936.05ABC transporter G family member 27 OS=Arabidopsis ... [more]
AB22G_ARATH7.230e-1734.30ABC transporter G family member 22 OS=Arabidopsis ... [more]
AB21G_ARATH1.233e-1635.95ABC transporter G family member 21 OS=Arabidopsis ... [more]
AB17G_ARATH1.233e-1646.60ABC transporter G family member 17 OS=Arabidopsis ... [more]
AB15G_ARATH1.233e-1644.14ABC transporter G family member 15 OS=Arabidopsis ... [more]
AB13G_ARATH2.747e-1644.14ABC transporter G family member 13 OS=Arabidopsis ... [more]
AB12G_ARATH4.686e-1643.24ABC transporter G family member 12 OS=Arabidopsis ... [more]
WHITE_ANOGA3.038e-1542.40Protein white OS=Anopheles gambiae GN=w PE=2 SV=1[more]
AB6G_ARATH3.038e-1545.10ABC transporter G family member 6 OS=Arabidopsis t... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32001D01EF DevOvary1 Citrus clementina cDNA clone C32001D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876184 ID=FC876184; Name=FC876184; organism=Citrus clementina; type=EST; length=671bp
GCTACTCCAGTTGCACTGCTGCAACGGAGGCTAAGCAACAAGAAGATAAA
GTTAAAATTAAATTTTATAAATAAAAAAGACAAAAATGGTGAATTTTGGA
GGGAATAAGGTGGGCCAAGTGGTGGCAGGAATTGGCGGGAACGGCGTAGG
CCAGGTACTGGCAGCCGTTGCCGTCTCTCTTTTGTTCCGCTTGTTTACTG
GACCTGGTCCGGCATTGGTAACAGATGACGACTCTGCCTATGGTGACGAC
GATGAAAGAAACGACGTCGCAGAAGCTAATGGTGACGGTGAAGCTCCGGT
TGACGGCAAAGTCTTCCCGGTCACCATCCGTTGACAAAACATCACTTGCT
CCCTGTCCGATAAATCCTCAAAATCAGTGCGGTTTCTTCTAAATAATGTG
AGTGGAGAGGCGAAACCTGGAAGATTATTGGCGATAATGGGACCGTCAGG
GTCAGGGAAAACAACGTTGCTGAATGTTCTGGCGGGTCAGTTAATGGCAT
CGCCACGATTACATTTATCCGGCCTATTGGAAGTCAATGGAAAACCTAGT
TCAAACAAAGCTTATAAGTTTGCCTATGTGAGACAGGAGGATCTTTTTTT
CTCTCAGTTGACAGTGCGGGAAACACTCTCTCTTGCAGCTGAACTTCAGC
TTCCAGAAATACTTTCTGTGG
back to top