FC876194

Overview
NameFC876194
Unique NameFC876194
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length657
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC876194_ssr98 microsatellite FC876194_ssr98:98..115. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC876194 vs. ExPASy Swiss-Prot
Match: CNGC4_ARATH (Cyclic nucleotide-gated ion channel 4 OS=Arabidopsis thaliana GN=CNGC4 PE=2 SV=2)

HSP 1 Score: 181.03 bits (458), Expect = 4.630e-45
Identity = 93/157 (59.24%), Postives = 110/157 (70.06%), Query Frame = 1
Query:  208 CGRRRRSN-----WSF-GQVLDPRAKWVQEWNRVFLLVCATGLFVDPLFFYALSISETCMCLFVDGWFAITVTALRCMTDLLHVWNMWLQLKMTKXXXXXXXXXXXXDDEDKRPRSGPH-SRSVALRYMKAKKGFFFDLFVILPLRQIVLWVVIPAL 657
            CG RR  +     W   G++LDPR+KWV+EWN+VFLLVCATGLFVDPLF Y LS+S+TCMCL VDGW A+TVTALR MTDLLH+WN+W+Q K+ +             D D     G   S  VA  Y+K K GFFFDLFVILPL Q+VLWVVIP+L
Sbjct:   60 CGGRRNGSSNNNKWMMLGRILDPRSKWVREWNKVFLLVCATGLFVDPLFLYTLSVSDTCMCLLVDGWLALTVTALRSMTDLLHLWNIWIQFKIAR----RWPYPGGDSDGDTNKGGGTRGSTRVAPPYVK-KNGFFFDLFVILPLPQVVLWVVIPSL 211          
BLAST of FC876194 vs. ExPASy Swiss-Prot
Match: CNGC2_ARATH (Cyclic nucleotide-gated ion channel 2 OS=Arabidopsis thaliana GN=CNGC2 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.686e-26
Identity = 65/150 (43.33%), Postives = 84/150 (56.00%), Query Frame = 1
Query:  214 RRRRSNWSFGQVLDPRAKWVQEWNRVFLLVCATGLFVDPLFFYALSISETC--MCLFVDGWFAITVTALRCMTDLLHVWNMWLQLKMTKXXXXXXXXXXXXDDEDKRPRSGPHSRSVALRYMKAKKGFFFDLFVILPLRQIVLWVVIPAL 657
            R RR    FG+VLDPR+K VQ WNR  LL     L VDPLFFYALSI  T    CL++DG FA  VT LR   D +H+W++WLQ ++                 D         R++A  Y ++  GF+FD+ VILP+ Q V W+V+P L
Sbjct:  102 RFRRLKGPFGEVLDPRSKRVQRWNRALLLARGMALAVDPLFFYALSIGRTTGPACLYMDGAFAAVVTVLRTCLDAVHLWHVWLQFRLAYVSRESLVVGCGKLVWD--------PRAIASHYARSLTGFWFDVIVILPVPQAVFWLVVPKL 243          
BLAST of FC876194 vs. ExPASy Swiss-Prot
Match: CNG20_ARATH (Probable cyclic nucleotide-gated ion channel 20, chloroplastic OS=Arabidopsis thaliana GN=CNGC20 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.458e-16
Identity = 43/136 (31.62%), Postives = 71/136 (52.21%), Query Frame = 1
Query:  247 VLDPRAKWVQEWNRVFLLVCATGLFVDPLFFYALSISETCMCLFVDGWFAITVTALRCMTDLLHVWNMWLQLKMTKXXXXXXXXXXXXDDEDKRPRSGPHSRSVALRYMKAKKGFFFDLFVILPLRQIVLWVVIPA 654
            +++P AK VQ W + F L C   +F+DPLFF+ + + E   C+ +D        A+R +TD++   N+ LQ ++                     +   H + +AL Y+K K  FF DLF+++PL QI++  +IPA
Sbjct:  192 IMNPHAKEVQTWTKFFALSCLLAIFIDPLFFFLIKVQEQNKCIMIDWPMTKAFVAVRSVTDVIFTMNILLQFRLAYVARESTVVGAG--------QLVSHPKKIALHYLKGK--FFLDLFIVMPLPQILILWIIPA 317          
BLAST of FC876194 vs. ExPASy Swiss-Prot
Match: CNGC1_ARATH (Cyclic nucleotide-gated ion channel 1 OS=Arabidopsis thaliana GN=CNGC1 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.897e-14
Identity = 43/136 (31.62%), Postives = 70/136 (51.47%), Query Frame = 1
Query:  244 QVLDPRAKWVQEWNRVFLLVCATGLFVDPLFFYALSISETCMCLFVDGWFAITVTALRCMTDLLHVWNMWLQLKMTKXXXXXXXXXXXXDDEDKRPRSGPHSRSVALRYMKAKKGFFFDLFVILPLRQIVLWVVIP 651
            ++LDP+  ++Q WN++F+L C   + +DPLFFY   I +   CL +D    IT + LR  TD+ +V ++  Q +                 EDK        R +A RY+ +   F  D+  +LPL Q+V+ ++IP
Sbjct:   83 KILDPQGPFLQRWNKIFVLACIIAVSLDPLFFYVPIIDDAKKCLGIDKKMEITASVLRSFTDVFYVLHIIFQFRTGFIAPSSRVFGRGVLVEDK--------REIAKRYLSSH--FIIDILAVLPLPQMVILIIIP 208          
BLAST of FC876194 vs. ExPASy Swiss-Prot
Match: CNG16_ARATH (Probable cyclic nucleotide-gated ion channel 16 OS=Arabidopsis thaliana GN=CNGC16 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.236e-14
Identity = 51/162 (31.48%), Postives = 76/162 (46.91%), Query Frame = 1
Query:  175 NGRRRDMFSGICGRRRRSNWSFGQVLDPRAKWVQEWNRVFLLVCATGLFVDPLFFYALSISETCMCLFVDGWFAITVTALRCMTDLLHVWNMWLQLK---MTKXXXXXXXXXXXXDDEDKRPRSGPHSRSVALRYMKAKKGFFFDLFVILPLRQIVLWVVIP 651
            N RRR +FS +  +           LDP    +  WN +FL+ C   LF+DPL+FY   +     C+ +D  F I VT  R + DL  + ++ L+ K   ++K            D            R +A+RY+K++  F  DL   LPL QI++W VIP
Sbjct:   30 NQRRRSIFSKLRDK----------TLDPGGDLITRWNHIFLITCLLALFLDPLYFYLPIVQAGTACMSIDVRFGIFVTCFRNLADLSFLIHILLKFKTAFVSKSSRVFGRGELVMD-----------RREIAIRYLKSE--FVIDLAATLPLPQIMIWFVIP 168          
BLAST of FC876194 vs. ExPASy Swiss-Prot
Match: CNG18_ARATH (Putative cyclic nucleotide-gated ion channel 18 OS=Arabidopsis thaliana GN=CNGC18 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.606e-13
Identity = 45/137 (32.85%), Postives = 69/137 (50.36%), Query Frame = 1
Query:  244 QVLDPRAKWVQEWNRVFLLVCATGLFVDPLFFYALSISETCMCLFVDGWFAITVTALRCMTDLLHVWNMWLQLKMTKXXXXXXXXXXXXDDEDKRPRSGPHSRSVALRYMKAKKGFFFDLFVILPLRQIVLWVVIPA 654
            Q+LDP +  V  WN VFL+     LF+DP +FY   +     CL +D   A TVT  R + D+ H+ +++++ +                    R      SR +A+RY+K    F  D+  +LPL Q+V+W+VIPA
Sbjct:   39 QILDPDSNIVTYWNHVFLITSILALFLDPFYFYVPYVGGPA-CLSIDISLAATVTFFRTVADIFHLLHIFMKFRTAFVARSSRVFG--------RGELVMDSREIAMRYLKT--DFLIDVAAMLPLPQLVIWLVIPA 164          
BLAST of FC876194 vs. ExPASy Swiss-Prot
Match: CNG15_ARATH (Putative cyclic nucleotide-gated ion channel 15 OS=Arabidopsis thaliana GN=CNGC15 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.971e-13
Identity = 39/138 (28.26%), Postives = 69/138 (50.00%), Query Frame = 1
Query:  244 QVLDPRAKWVQEWNRVFLLVCATGLFVDPLFFYALSISETCMCLFVDGWFAITVTALRCMTDLLHVWNMWLQLKMTKXXXXXXXXXXXXDDEDKRPRSGPHSRSVALRYMKAKKGFFFDLFVILPLRQIVLWVVIPAL 657
            ++LDPR + ++ WN++FL+ C   LFVDPLFF+ L +     C+ +     + +T +R + D  ++  + ++ +                    R      SR +A RY+   K F+  L   LPL Q+++W++IP L
Sbjct:   67 KILDPRGQTIRRWNKIFLIACLVSLFVDPLFFF-LPVMRNEACITIGVRLEVVLTLIRSLADAFYIAQILIRFRTAYIAPPSRVFG--------RGELVIDSRKIAWRYL--HKSFWIHLVAALPLPQVLIWIIIPNL 193          
BLAST of FC876194 vs. ExPASy Swiss-Prot
Match: CNG19_ARATH (Putative cyclic nucleotide-gated ion channel 19 OS=Arabidopsis thaliana GN=CNGC19 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.167e-12
Identity = 40/138 (28.99%), Postives = 69/138 (50.00%), Query Frame = 1
Query:  247 VLDPRAKWVQEWNRVFLLVCATGLFVDPLFFYALSISETCMCLFVDGWFAITVTALRCMTDLLHVWNMWLQLKMTKXXXXXXXXXXXXDDEDKRPRSG---PHSRSVALRYMKAKKGFFFDLFVILPLRQIVLWVVIP 651
            +++P +K+VQ W RV        +F+DPLFF+ L I +   C+ +D      + +LR +TDL+   N+ LQ ++                E +   +G    H R +A  Y + K  F  D+F++ P+ QI++  +IP
Sbjct:  158 IMNPHSKFVQVWTRVLAFSSLVAIFIDPLFFFLLLIQQDNKCIAIDWRATKVLVSLRSITDLIFFINILLQFRLA-----------YVAPESRIVGAGQLVDHPRKIARHYFRGK--FLLDMFIVFPIPQIMILRIIP 282          
BLAST of FC876194 vs. ExPASy Swiss-Prot
Match: CNG10_ARATH (Probable cyclic nucleotide-gated ion channel 10 OS=Arabidopsis thaliana GN=CNGC10 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 6.748e-12
Identity = 39/137 (28.47%), Postives = 68/137 (49.64%), Query Frame = 1
Query:  247 VLDPRAKWVQEWNRVFLLVCATGLFVDPLFFYALSISETCMCLFVDGWFAITVTALRCMTDLLHVWNMWLQLKMTKXXXXXXXXXXXXDDEDKRPRSGPHSRSVALRYMKAKKGFFFDLFVILPLRQIVLWVVIPAL 657
            +++P+  ++Q WN++FL  C   L +DPLFFY   +     CL +D    I  + LR + D  ++ ++  Q +                 +D        ++++AL+Y+ +   F  DL  ILPL QIV+  VIP++
Sbjct:   68 IINPQDSFLQNWNKIFLFACVVALAIDPLFFYIPIVDSARHCLTLDSKLEIAASLLRTLIDAFYIIHIVFQFRTAYIAPSSRVFGRGELVDD--------AKAIALKYLSSY--FIIDLLSILPLPQIVVLAVIPSV 194          
BLAST of FC876194 vs. ExPASy Swiss-Prot
Match: CNG14_ARATH (Probable cyclic nucleotide-gated ion channel 14 OS=Arabidopsis thaliana GN=CNGC14 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.151e-11
Identity = 44/140 (31.43%), Postives = 67/140 (47.86%), Query Frame = 1
Query:  244 QVLDPRAKWVQEWNRVFLLVCATGLFVDPLFFYALSISE--TCMCLFVDGWFAITVTALRCMTDLLHVWNMWLQLKMTKXXXXXXXXXXXXDDEDKRPRSGPHSRSVALRYMKAKKGFFFDLFVILPLRQIVLWVVIPAL 657
            ++LDP    V +WNRVFL  C   L+VDPLFF+  S+       C+  D    I +T  R + DL +V  + + +K                +  K P      + +A RY+++   F  DL   LPL QIV W ++P++
Sbjct:   71 KILDPGGDAVLQWNRVFLFWCLVALYVDPLFFFLSSVKRIGRSSCMTTDLKLGIVITFFRTLADLFYV--LHIVIKFRTAYVSRTSRVFGRGELVKDP------KLIARRYLRS--DFIVDLIACLPLPQIVSWFILPSI 200          
The following BLAST results are available for this feature:
BLAST of FC876194 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
CNGC4_ARATH4.630e-4559.24Cyclic nucleotide-gated ion channel 4 OS=Arabidops... [more]
CNGC2_ARATH3.686e-2643.33Cyclic nucleotide-gated ion channel 2 OS=Arabidops... [more]
CNG20_ARATH3.458e-1631.62Probable cyclic nucleotide-gated ion channel 20, c... [more]
CNGC1_ARATH1.897e-1431.62Cyclic nucleotide-gated ion channel 1 OS=Arabidops... [more]
CNG16_ARATH3.236e-1431.48Probable cyclic nucleotide-gated ion channel 16 OS... [more]
CNG18_ARATH1.606e-1332.85Putative cyclic nucleotide-gated ion channel 18 OS... [more]
CNG15_ARATH7.971e-1328.26Putative cyclic nucleotide-gated ion channel 15 OS... [more]
CNG19_ARATH5.167e-1228.99Putative cyclic nucleotide-gated ion channel 19 OS... [more]
CNG10_ARATH6.748e-1228.47Probable cyclic nucleotide-gated ion channel 10 OS... [more]
CNG14_ARATH1.151e-1131.43Probable cyclic nucleotide-gated ion channel 14 OS... [more]
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Properties
Property NameValue
Genbank descriptionC32001E04EF DevOvary1 Citrus clementina cDNA clone C32001E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876194 ID=FC876194; Name=FC876194; organism=Citrus clementina; type=EST; length=657bp
ATCAGTTTCCGAGTACAATGGTGGGATTGTAAGAAAGAAATCGTTCGTGC
GGCACGCGTGCAATATTATACAACAACAGACGATGACTCGGACGATAAAG
AAGAAGAAGAAGAAGAAATGGTTGACGAGGAAGAACAAGAGGAAGAAGAA
GGAGAAGTGGAAGAAAGATGTAAAAATGGGAGGAGAAGGGACATGTTTAG
TGGGATTTGTGGGAGAAGGAGAAGGTCAAATTGGTCATTTGGACAAGTGC
TGGACCCGAGAGCCAAATGGGTTCAAGAATGGAATAGGGTTTTCCTCTTG
GTATGCGCCACTGGCCTCTTCGTCGATCCTCTCTTCTTCTACGCCCTCTC
CATAAGCGAAACGTGCATGTGCCTCTTCGTCGACGGCTGGTTCGCCATCA
CAGTCACCGCCCTCCGGTGCATGACCGACCTCCTGCACGTGTGGAACATG
TGGCTTCAGCTCAAGATGACCAAGGCTGCCTACGGCGTTGGTGGTGCAGC
CGCAGCCGCTGATGATGAAGATAAGAGGCCCAGAAGTGGGCCCCACTCTC
GCTCGGTGGCTCTTCGTTACATGAAGGCCAAGAAGGGTTTCTTCTTCGAT
CTCTTTGTCATCCTTCCTCTACGTCAGATAGTACTATGGGTTGTGATTCC
GGCCCTA
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