FC876199

Overview
NameFC876199
Unique NameFC876199
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC876199_ssr93 microsatellite FC876199_ssr93:93..102. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10310 contig Ccv1_Contig10310:1..682. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876199 vs. ExPASy Swiss-Prot
Match: SCAM3_ARATH (Secretory carrier-associated membrane protein 3 OS=Arabidopsis thaliana GN=SCAMP3 PE=1 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 6.826e-47
Identity = 96/173 (55.49%), Postives = 112/173 (64.74%), Query Frame = 1
Query:  160 MAGRYDSNPF-DEEEVNPFSDPAVRXXXXXXXXXXXXXXXTTNSASVPPATNSRLSPLPHEPAGFNFERDAPIDIPXXXXXXXXXXXXXXXXXXXXXRRREQDVRRKEEAAARAGIVLEEKNWPPFSPIIHHDIANEIPIHLQRLQYVAFATYLGLFVCLLWNIVAVTTAWIK 675
            MA RYD NPF +EEEVNPF+                      N+  VPPA+NSRLSPLP EP GF++ R   I +                      +RREQD++RKE+AAARAGIV+E KNWPPF P+IHHDIANEIP+HLQRLQYV FATYLGL +CL WNI+AVTTAWIK
Sbjct:    1 MANRYDPNPFAEEEEVNPFA----------------------NARGVPPASNSRLSPLPPEPVGFDYGRTVDIPLDRAGTQDLKKKEKELQAKEAELKRREQDLKRKEDAAARAGIVIEVKNWPPFFPLIHHDIANEIPVHLQRLQYVTFATYLGLVLCLFWNIIAVTTAWIK 151          
BLAST of FC876199 vs. ExPASy Swiss-Prot
Match: SCAM2_ORYSJ (Secretory carrier-associated membrane protein 2 OS=Oryza sativa subsp. japonica GN=SCAMP2 PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 3.746e-45
Identity = 91/172 (52.91%), Postives = 110/172 (63.95%), Query Frame = 1
Query:  160 MAGRYDSNPFDEEEVNPFSDPAVRXXXXXXXXXXXXXXXTTNSASVPPATNSRLSPLPHEPAGFNFERDAPIDIPXXXXXXXXXXXXXXXXXXXXXRRREQDVRRKEEAAARAGIVLEEKNWPPFSPIIHHDIANEIPIHLQRLQYVAFATYLGLFVCLLWNIVAVTTAWIK 675
            MAGRYD NPFDE++VNPF+                         SVPPA+NSR+ PLPHEP GF  +R A +DIP                      +RE ++RR+EEAA+RAGIV+EEKNWPPF PIIHHDI+NEIPIHLQR+QY+AF++ LGL  CL WNI+A T AWIK
Sbjct:    1 MAGRYDRNPFDEDDVNPFA-----------------------GGSVPPASNSRMPPLPHEP-GFYNDRGATVDIPLDSTKDMKKKEKELQAKEAELNKRESELRRREEAASRAGIVIEEKNWPPFFPIIHHDISNEIPIHLQRMQYLAFSSLLGLAACLFWNIIATTAAWIK 148          
BLAST of FC876199 vs. ExPASy Swiss-Prot
Match: SCAM1_ORYSJ (Secretory carrier-associated membrane protein 1 OS=Oryza sativa subsp. japonica GN=SCAMP1 PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.171e-44
Identity = 91/173 (52.60%), Postives = 114/173 (65.90%), Query Frame = 1
Query:  160 MAGRYDSNPFDEEEVNPFSDPAVRXXXXXXXXXXXXXXXTTNSASVPP-ATNSRLSPLPHEPAGFNFERDAPIDIPXXXXXXXXXXXXXXXXXXXXXRRREQDVRRKEEAAARAGIVLEEKNWPPFSPIIHHDIANEIPIHLQRLQYVAFATYLGLFVCLLWNIVAVTTAWIK 675
            MAGRYDSNPF+E++VNPFS+ A R                 N  +VP  ++NSRLSPLP EPA F     A +DIP                      +RE++++R+EEAAARAGIV+EEKNWPPF P+IHHDI NEIP HLQR+QYVAFA++LGL  CL WN++AVT+AW+K
Sbjct:    1 MAGRYDSNPFEEDDVNPFSEQA-RGKAGGQPSYGGGAFYMPNPRNVPSVSSNSRLSPLPPEPAAFG----ATVDIPLDSSKDLKNREKELQAREAELNKREKELKRREEAAARAGIVIEEKNWPPFLPLIHHDITNEIPSHLQRMQYVAFASFLGLACCLFWNVIAVTSAWVK 168          
BLAST of FC876199 vs. ExPASy Swiss-Prot
Match: SCAM1_ORYSI (Putative secretory carrier-associated membrane protein 1 OS=Oryza sativa subsp. indica GN=SCAMP1 PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.171e-44
Identity = 91/173 (52.60%), Postives = 114/173 (65.90%), Query Frame = 1
Query:  160 MAGRYDSNPFDEEEVNPFSDPAVRXXXXXXXXXXXXXXXTTNSASVPP-ATNSRLSPLPHEPAGFNFERDAPIDIPXXXXXXXXXXXXXXXXXXXXXRRREQDVRRKEEAAARAGIVLEEKNWPPFSPIIHHDIANEIPIHLQRLQYVAFATYLGLFVCLLWNIVAVTTAWIK 675
            MAGRYDSNPF+E++VNPFS+ A R                 N  +VP  ++NSRLSPLP EPA F     A +DIP                      +RE++++R+EEAAARAGIV+EEKNWPPF P+IHHDI NEIP HLQR+QYVAFA++LGL  CL WN++AVT+AW+K
Sbjct:    1 MAGRYDSNPFEEDDVNPFSEQA-RGKAGGQPSYGGGAFYMPNPRNVPSMSSNSRLSPLPPEPAAFG----ATVDIPLDSSKDLKNREKELQAREAELNKREKELKRREEAAARAGIVIEEKNWPPFLPLIHHDITNEIPSHLQRMQYVAFASFLGLACCLFWNVIAVTSAWVK 168          
BLAST of FC876199 vs. ExPASy Swiss-Prot
Match: SCAM5_ARATH (Secretory carrier-associated membrane protein 5 OS=Arabidopsis thaliana GN=SCAMP5 PE=2 SV=2)

HSP 1 Score: 177.178 bits (448), Expect = 7.064e-44
Identity = 95/175 (54.29%), Postives = 111/175 (63.43%), Query Frame = 1
Query:  160 MAGRYDSNPFDEE-EVNPFSDPAVRXXXXXXXXXXXXXXXTTNSASVPPATNSRLSPLPHEPAGFNFER--DAPIDIPXXXXXXXXXXXXXXXXXXXXXRRREQDVRRKEEAAARAGIVLEEKNWPPFSPIIHHDIANEIPIHLQRLQYVAFATYLGLFVCLLWNIVAVTTAWIK 675
            M GRYD N FDE+ EVNPF++P                       SVP A+NSRLSPLP EPAGF + R  D P+D P                     RRREQD++RK++AAARAGIV+E KNWP F P+IHHDIANEI + LQRLQY+AFATYLGL + L WNI+AVTTAWIK
Sbjct:    1 MGGRYDRNTFDEQDEVNPFANPG----------------------SVPAASNSRLSPLPPEPAGFGYGRTVDIPLDRPGSGAQDLKKKEKELQAKEADLRRREQDLKRKQDAAARAGIVIEAKNWPTFFPLIHHDIANEILVRLQRLQYIAFATYLGLVLALFWNIIAVTTAWIK 153          
BLAST of FC876199 vs. ExPASy Swiss-Prot
Match: SCAM_PEA (Secretory carrier-associated membrane protein OS=Pisum sativum GN=PSAM2 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 3.876e-42
Identity = 90/172 (52.33%), Postives = 105/172 (61.05%), Query Frame = 1
Query:  160 MAGRYDSNPFDEEEVNPFSDPAVRXXXXXXXXXXXXXXXTTNSASVPPATNSRLSPLPHEPAGFNFERDAPIDIPXXXXXXXXXXXXXXXXXXXXXRRREQDVRRKEEAAARAGIVLEEKNWPPFSPIIHHDIANEIPIHLQRLQYVAFATYLGLFVCLLWNIVAVTTAWIK 675
            MAGRYD NPFDEE+VNPFS+P                       S   ATNSR +PL  + A +N+     +DIP                     R+REQ+VRRKEEA ARAGIV+EEKNWPPF PIIHHDI NEIPIHL+ LQYVAF + LGL +CL WN+V+VT AWIK
Sbjct:    1 MAGRYDPNPFDEEQVNPFSNPR----------------------SAASATNSRPAPLNPDRADYNYGFGPTVDIPLDTSTDGKKKERDLQAKEAELRKREQEVRRKEEAIARAGIVIEEKNWPPFFPIIHHDITNEIPIHLRTLQYVAFFSLLGLVLCLTWNVVSVTAAWIK 150          
BLAST of FC876199 vs. ExPASy Swiss-Prot
Match: SCAM4_ORYSJ (Secretory carrier-associated membrane protein 4 OS=Oryza sativa subsp. japonica GN=SCAMP4 PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.513e-41
Identity = 94/178 (52.81%), Postives = 112/178 (62.92%), Query Frame = 1
Query:  160 MAGR--YDSNPFDE---EEVNPFSDPAVRXXXXXXXXXXXXXXXTTNSA-SVPPATNSRLSPLPHEPAGFNFERDAPIDIPXXXXXXXXXXXXXXXXXXXXXRRREQDVRRKEEAAARAGIVLEEKNWPPFSPIIHHDIANEIPIHLQRLQYVAFATYLGLFVCLLWNIVAVTTAWIK 675
            MAGR  YD NPF+E   +EVNPF+D A +               TT S  S PPAT+  LSPLP EPA F  +   P+DIP                      RRE++++R+EEAAARAGIVLE+KNWPPF PIIH+DI NEIP+HLQR QYVAFA+ LGL +CL WNI+ VT AWIK
Sbjct:    1 MAGRSRYD-NPFEEGGGDEVNPFADKASKGGSAGQSSYSGGAFYTTQSRPSAPPATH--LSPLPPEPADFYNDFSTPVDIPMDTSKDMKTREKELLAKEAELNRREKEIKRREEAAARAGIVLEDKNWPPFFPIIHNDIGNEIPVHLQRTQYVAFASLLGLVLCLFWNIICVTAAWIK 175          
BLAST of FC876199 vs. ExPASy Swiss-Prot
Match: SCAM1_ARATH (Secretory carrier-associated membrane protein 1 OS=Arabidopsis thaliana GN=SCAMP1 PE=1 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.629e-40
Identity = 88/169 (52.07%), Postives = 108/169 (63.91%), Query Frame = 1
Query:  169 RYDSNPFDEEEVNPFSDPAVRXXXXXXXXXXXXXXXTTNSASVPPATNSRLSPLPHEPAGFNFERDAPIDIPXXXXXXXXXXXXXXXXXXXXXRRREQDVRRKEEAAARAGIVLEEKNWPPFSPIIHHDIANEIPIHLQRLQYVAFATYLGLFVCLLWNIVAVTTAWIK 675
            RY S+ FD+ E+NPF++P                       SVP AT S+LSPLP EP    ++R A +DIP                     +RREQ+++RKE+A A+AGIV+EEKNWPPF P+IHHDI+NEIPIHLQR+QYVAF + LGL VCLLWNIVAVTTAWIK
Sbjct:    3 RYQSHSFDDGEINPFANPT----------------------SVPAAT-SKLSPLPPEP----YDRGATMDIPLDSGKDLKAKEKELREKEAELKRREQEIKRKEDAIAQAGIVIEEKNWPPFFPLIHHDISNEIPIHLQRIQYVAFTSMLGLVVCLLWNIVAVTTAWIK 144          
BLAST of FC876199 vs. ExPASy Swiss-Prot
Match: SCAM2_ARATH (Secretory carrier-associated membrane protein 2 OS=Arabidopsis thaliana GN=SCAMP2 PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.801e-39
Identity = 83/169 (49.11%), Postives = 103/169 (60.95%), Query Frame = 1
Query:  169 RYDSNPFDEEEVNPFSDPAVRXXXXXXXXXXXXXXXTTNSASVPPATNSRLSPLPHEPAGFNFERDAPIDIPXXXXXXXXXXXXXXXXXXXXXRRREQDVRRKEEAAARAGIVLEEKNWPPFSPIIHHDIANEIPIHLQRLQYVAFATYLGLFVCLLWNIVAVTTAWIK 675
            R+D NPF +EE+NPF+                      N  SVPPA+NS L PLP EP    ++R A +DIP                     +R+EQ+++R+E+A AR G+V+EEKNWP F P+IHHDI NEIPIHLQ++QYVAF T LGL  CLLWNIVAVT AWIK
Sbjct:    3 RHDPNPFADEEINPFA----------------------NHTSVPPASNSYLKPLPPEP----YDRGATVDIPLDSGNDLRAKEMELQAKENELKRKEQELKRREDAIARTGVVIEEKNWPEFFPLIHHDIPNEIPIHLQKIQYVAFTTLLGLVGCLLWNIVAVTVAWIK 145          
BLAST of FC876199 vs. ExPASy Swiss-Prot
Match: SCAM3_ORYSJ (Secretory carrier-associated membrane protein 3 OS=Oryza sativa subsp. japonica GN=SCAMP3 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 8.936e-39
Identity = 80/172 (46.51%), Postives = 106/172 (61.63%), Query Frame = 1
Query:  160 MAGRYDSNPFDEEEVNPFSDPAVRXXXXXXXXXXXXXXXTTNSASVPPATNSRLSPLPHEPAGFNFERDAPIDIPXXXXXXXXXXXXXXXXXXXXXRRREQDVRRKEEAAARAGIVLEEKNWPPFSPIIHHDIANEIPIHLQRLQYVAFATYLGLFVCLLWNIVAVTTAWIK 675
            MAG++  N F++++VNPF+                         SVPPA NSRL PL HEPA F       +DIP                      +RE++++RKEEAAA+AGIV+E+KNWPPF P+IHH+I+NEIPIHLQR+QY+AF+++LGL  CL WNI+A TTAW+K
Sbjct:    1 MAGKHGRNGFEDDDVNPFA-----------------------GGSVPPANNSRLPPLSHEPADFY-----NVDIPLDSSKDLKKKEKELQAMEAELNKRERELKRKEEAAAQAGIVIEDKNWPPFFPLIHHNISNEIPIHLQRMQYLAFSSFLGLAACLFWNIIATTTAWVK 144          
The following BLAST results are available for this feature:
BLAST of FC876199 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
SCAM3_ARATH6.826e-4755.49Secretory carrier-associated membrane protein 3 OS... [more]
SCAM2_ORYSJ3.746e-4552.91Secretory carrier-associated membrane protein 2 OS... [more]
SCAM1_ORYSJ3.171e-4452.60Secretory carrier-associated membrane protein 1 OS... [more]
SCAM1_ORYSI3.171e-4452.60Putative secretory carrier-associated membrane pro... [more]
SCAM5_ARATH7.064e-4454.29Secretory carrier-associated membrane protein 5 OS... [more]
SCAM_PEA3.876e-4252.33Secretory carrier-associated membrane protein OS=P... [more]
SCAM4_ORYSJ2.513e-4152.81Secretory carrier-associated membrane protein 4 OS... [more]
SCAM1_ARATH1.629e-4052.07Secretory carrier-associated membrane protein 1 OS... [more]
SCAM2_ARATH1.801e-3949.11Secretory carrier-associated membrane protein 2 OS... [more]
SCAM3_ORYSJ8.936e-3946.51Secretory carrier-associated membrane protein 3 OS... [more]

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Properties
Property NameValue
Genbank descriptionC32001F01EF DevOvary1 Citrus clementina cDNA clone C32001F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876199 ID=FC876199; Name=FC876199; organism=Citrus clementina; type=EST; length=677bp
GAAATTGTAAAATTCTGAGGCGCGCGCATAAACGCTGACTGAAGACGAGG
CATAAACGCTGACTGAAGACGAGTCCAACAACTTTCATATCATCTCTCTC
TCTTTAAATCGTTCTCCGATTTCTCTCAAGATTTGGTGAAAAAGTTATAA
CCGCTTGTGATGGCCGGCCGTTACGACAGCAATCCCTTCGATGAAGAGGA
AGTGAATCCTTTCTCCGACCCAGCTGTTAGGGGGAAAAGCTCGGGCCAAT
CAAGGTTTGGTGGAGGTGGATTTTTTACAACAAACAGTGCAAGTGTTCCA
CCTGCAACTAATTCAAGGCTTTCACCTCTTCCTCATGAACCAGCTGGTTT
CAATTTTGAACGTGATGCGCCTATTGACATTCCTCTTGATACAGCTGCGG
ATTTGAAGAAGAAAGAGAAGGAACTTCAAGCTAAGGAGGCTGAATTAAGA
AGGCGGGAGCAGGATGTAAGAAGGAAAGAAGAAGCTGCAGCACGAGCTGG
AATTGTTCTTGAGGAGAAAAACTGGCCACCATTTTCCCCCATTATTCATC
ATGACATTGCAAACGAAATACCAATTCATCTACAAAGGCTGCAATATGTT
GCATTTGCAACATATTTAGGATTGTTTGTGTGTCTCCTGTGGAACATCGT
AGCTGTTACCACAGCATGGATCAAAGG
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