FC876216

Overview
NameFC876216
Unique NameFC876216
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length754
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12983 contig Ccv1_Contig12983:22..775. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876216 vs. ExPASy Swiss-Prot
Match: CSN5A_ARATH (COP9 signalosome complex subunit 5a OS=Arabidopsis thaliana GN=CSN5A PE=1 SV=1)

HSP 1 Score: 348.206 bits (892), Expect = 2.818e-95
Identity = 170/213 (79.81%), Postives = 187/213 (87.79%), Query Frame = 1
Query:  115 SSIAQKTWELENNIVSMETPPTNSTADTSASDAIFFYDEGAQTKFQQEKPWVNDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSISMLNQQFQEPFLAVVIDPTRTVSAGKS*DGAFRTYPERIQPPDEPISEYQTIP 753
            S+IA+KTWELEN+I+++++P        S SD IF+YD+ +QT+FQQEKPW NDPHYFKRVKISALALLKMVVHARSGGTIE+MGLMQGKTDGD IIVMDAFALPVEGTETRVNAQ DAYEYMV+YSQTNK AGRLEN VGWYHSHPGYGCWLSGIDVS   LNQQ QEPFLAVVIDPTRTVSAGK   GAFRTY +  +PPDEP+SEYQTIP
Sbjct:    6 STIARKTWELENSILTVDSPD-------STSDNIFYYDDTSQTRFQQEKPWENDPHYFKRVKISALALLKMVVHARSGGTIEIMGLMQGKTDGDTIIVMDAFALPVEGTETRVNAQDDAYEYMVEYSQTNKLAGRLENVVGWYHSHPGYGCWLSGIDVSTQRLNQQHQEPFLAVVIDPTRTVSAGKVEIGAFRTYSKGYKPPDEPVSEYQTIP 211          
BLAST of FC876216 vs. ExPASy Swiss-Prot
Match: CSN5B_ARATH (COP9 signalosome complex subunit 5b OS=Arabidopsis thaliana GN=CSN5B PE=1 SV=2)

HSP 1 Score: 335.109 bits (858), Expect = 2.469e-91
Identity = 167/213 (78.40%), Postives = 186/213 (87.32%), Query Frame = 1
Query:  115 SSIAQKTWELENNIVSMETPPTNSTADTSASDAIFFYDEGAQTKFQQEKPWVNDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSISMLNQQFQEPFLAVVIDPTRTVSAGKS*DGAFRTYPERIQPPDEPISEYQTIP 753
            S+IA+KTWELENNI+ +E  PT+S     ASD+IF YD+ +Q K QQEKPW +DP+YFKRV ISALALLKMVVHARSGGTIE+MGLMQGKT+GD IIVMDAFALPVEGTETRVNAQ+DAYEYMV+YSQT+K AGRLEN VGWYHSHPGYGCWLSGIDVS  MLNQQ+QEPFLAVVIDPTRTVSAGK   GAFRTYPE  +  D+ +SEYQTIP
Sbjct:    6 SAIARKTWELENNILPVE--PTDS-----ASDSIFHYDDASQAKIQQEKPWASDPNYFKRVHISALALLKMVVHARSGGTIEIMGLMQGKTEGDTIIVMDAFALPVEGTETRVNAQSDAYEYMVEYSQTSKLAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQYQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGHKISDDHVSEYQTIP 211          
BLAST of FC876216 vs. ExPASy Swiss-Prot
Match: CSN5_XENTR (COP9 signalosome complex subunit 5 OS=Xenopus tropicalis GN=cops5 PE=2 SV=1)

HSP 1 Score: 291.582 bits (745), Expect = 3.131e-78
Identity = 143/213 (67.14%), Postives = 164/213 (77.00%), Query Frame = 1
Query:  115 SSIAQKTWELENNIVSMETPPTNSTADTSASDAIFFYDEGAQTKFQQEKPWVNDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSISMLNQQFQEPFLAVVIDPTRTVSAGKS*DGAFRTYPERIQPPDEPISEYQTIP 753
            SS+AQKTWEL NN+  +++            D I+ YD+  Q +    KPW  D HYFK  K+SALALLKMV+HARSGG +EVMGLM GK DG+ +I+MD+FALPVEGTETRVNAQA AYEYM  Y +  KQ GRLENA+GWYHSHPGYGCWLSGIDVS  MLNQQFQEPF+AVVIDPTRT+SAGK   GAFRTYP+  +PPDE  SEYQTIP
Sbjct:    6 SSVAQKTWELSNNMQEVQS-----------IDEIYKYDKKQQQEILAAKPWTKDHHYFKYCKVSALALLKMVMHARSGGNLEVMGLMLGKVDGETMIIMDSFALPVEGTETRVNAQAAAYEYMAAYIENAKQVGRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFVAVVIDPTRTISAGKVNLGAFRTYPKGYKPPDEGPSEYQTIP 207          
BLAST of FC876216 vs. ExPASy Swiss-Prot
Match: CSN5_XENLA (COP9 signalosome complex subunit 5 OS=Xenopus laevis GN=cops5 PE=2 SV=1)

HSP 1 Score: 291.582 bits (745), Expect = 3.131e-78
Identity = 143/213 (67.14%), Postives = 164/213 (77.00%), Query Frame = 1
Query:  115 SSIAQKTWELENNIVSMETPPTNSTADTSASDAIFFYDEGAQTKFQQEKPWVNDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSISMLNQQFQEPFLAVVIDPTRTVSAGKS*DGAFRTYPERIQPPDEPISEYQTIP 753
            SS+AQKTWEL NN+  +++            D I+ YD+  Q +    KPW  D HYFK  K+SALALLKMV+HARSGG +EVMGLM GK DG+ +I+MD+FALPVEGTETRVNAQA AYEYM  Y +  KQ GRLENA+GWYHSHPGYGCWLSGIDVS  MLNQQFQEPF+AVVIDPTRT+SAGK   GAFRTYP+  +PPDE  SEYQTIP
Sbjct:    4 SSVAQKTWELSNNMQEVQS-----------IDEIYKYDKKQQQEILAAKPWTKDHHYFKYCKVSALALLKMVMHARSGGNLEVMGLMLGKVDGETMIIMDSFALPVEGTETRVNAQAAAYEYMAAYIENAKQVGRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFVAVVIDPTRTISAGKVNLGAFRTYPKGYKPPDEGPSEYQTIP 205          
BLAST of FC876216 vs. ExPASy Swiss-Prot
Match: CSN5_MOUSE (COP9 signalosome complex subunit 5 OS=Mus musculus GN=Cops5 PE=1 SV=3)

HSP 1 Score: 289.271 bits (739), Expect = 1.554e-77
Identity = 143/213 (67.14%), Postives = 162/213 (76.06%), Query Frame = 1
Query:  115 SSIAQKTWELENNIVSMETPPTNSTADTSASDAIFFYDEGAQTKFQQEKPWVNDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSISMLNQQFQEPFLAVVIDPTRTVSAGKS*DGAFRTYPERIQPPDEPISEYQTIP 753
            S +AQKTWEL NN+            +  + D I+ YD+  Q +    KPW  D HYFK  KISALALLKMV+HARSGG +EVMGLM GK DG+ +I+MD+FALPVEGTETRVNAQA AYEYM  Y +  KQ GRLENA+GWYHSHPGYGCWLSGIDVS  MLNQQFQEPF+AVVIDPTRT+SAGK   GAFRTYP+  +PPDE  SEYQTIP
Sbjct:    6 SGMAQKTWELANNM-----------QEAQSIDEIYKYDKKQQQEILAAKPWTKDHHYFKYCKISALALLKMVMHARSGGNLEVMGLMLGKVDGETMIIMDSFALPVEGTETRVNAQAAAYEYMAAYIENAKQVGRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFVAVVIDPTRTISAGKVNLGAFRTYPKGYKPPDEGPSEYQTIP 207          
BLAST of FC876216 vs. ExPASy Swiss-Prot
Match: CSN5_HUMAN (COP9 signalosome complex subunit 5 OS=Homo sapiens GN=COPS5 PE=1 SV=4)

HSP 1 Score: 289.271 bits (739), Expect = 1.554e-77
Identity = 143/213 (67.14%), Postives = 162/213 (76.06%), Query Frame = 1
Query:  115 SSIAQKTWELENNIVSMETPPTNSTADTSASDAIFFYDEGAQTKFQQEKPWVNDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSISMLNQQFQEPFLAVVIDPTRTVSAGKS*DGAFRTYPERIQPPDEPISEYQTIP 753
            S +AQKTWEL NN+            +  + D I+ YD+  Q +    KPW  D HYFK  KISALALLKMV+HARSGG +EVMGLM GK DG+ +I+MD+FALPVEGTETRVNAQA AYEYM  Y +  KQ GRLENA+GWYHSHPGYGCWLSGIDVS  MLNQQFQEPF+AVVIDPTRT+SAGK   GAFRTYP+  +PPDE  SEYQTIP
Sbjct:    6 SGMAQKTWELANNM-----------QEAQSIDEIYKYDKKQQQEILAAKPWTKDHHYFKYCKISALALLKMVMHARSGGNLEVMGLMLGKVDGETMIIMDSFALPVEGTETRVNAQAAAYEYMAAYIENAKQVGRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFVAVVIDPTRTISAGKVNLGAFRTYPKGYKPPDEGPSEYQTIP 207          
BLAST of FC876216 vs. ExPASy Swiss-Prot
Match: CSN5_DROME (COP9 signalosome complex subunit 5 OS=Drosophila melanogaster GN=CSN5 PE=1 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 2.650e-77
Identity = 142/215 (66.05%), Postives = 164/215 (76.28%), Query Frame = 1
Query:  109 MDSSIAQKTWELENNIVSMETPPTNSTADTSASDAIFFYDEGAQTKFQQEKPWVNDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSISMLNQQFQEPFLAVVIDPTRTVSAGKS*DGAFRTYPERIQPPDEPISEYQTIP 753
            MDS  AQKTWELENNI ++ +            D IF YD   Q +    KPW  DPH+FK +KISALALLKMV+HARSGGT+EVMGLM GK + + +IVMDAFALPVEGTETRVNAQA AYEYM  Y +  K+ GR+E+AVGWYHSHPGYGCWLSGIDVS  MLNQ +QEPF+A+V+DP RTVSAGK   GAFRTYP+  +PP+E  SEYQTIP
Sbjct:    1 MDSDAAQKTWELENNIQTLPS-----------CDEIFRYDAEQQRQIIDAKPWEKDPHFFKDIKISALALLKMVMHARSGGTLEVMGLMLGKVEDNTMIVMDAFALPVEGTETRVNAQAQAYEYMTAYMEAAKEVGRMEHAVGWYHSHPGYGCWLSGIDVSTQMLNQTYQEPFVAIVVDPVRTVSAGKVCLGAFRTYPKGYKPPNEEPSEYQTIP 204          
BLAST of FC876216 vs. ExPASy Swiss-Prot
Match: CSN5_DANRE (COP9 signalosome complex subunit 5 OS=Danio rerio GN=cops5 PE=2 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 2.650e-77
Identity = 143/213 (67.14%), Postives = 162/213 (76.06%), Query Frame = 1
Query:  115 SSIAQKTWELENNIVSMETPPTNSTADTSASDAIFFYDEGAQTKFQQEKPWVNDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSISMLNQQFQEPFLAVVIDPTRTVSAGKS*DGAFRTYPERIQPPDEPISEYQTIP 753
            SSIA KTWEL           +NS  +  + D I+ YD+  Q +    KPW  D HYFK  K+SALALLKMV+HARSGG +EVMGLM GK DG+ +I+MD+FALPVEGTETRVNAQA AYEYM  Y +  KQ GRLENA+GWYHSHPGYGCWLSGIDVS  MLNQQFQEPF+AVVIDPTRT+SAGK   GAFRTYP+  +PPDE  SEYQTIP
Sbjct:    4 SSIAMKTWEL-----------SNSMQEVQSIDEIYKYDKKQQQEILAAKPWTKDHHYFKYCKLSALALLKMVMHARSGGNLEVMGLMLGKVDGETMIIMDSFALPVEGTETRVNAQAAAYEYMAAYIENAKQVGRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFVAVVIDPTRTISAGKVNLGAFRTYPKGYKPPDEGPSEYQTIP 205          
BLAST of FC876216 vs. ExPASy Swiss-Prot
Match: CSN5_DICDI (COP9 signalosome complex subunit 5 OS=Dictyostelium discoideum GN=csn5 PE=1 SV=1)

HSP 1 Score: 273.863 bits (699), Expect = 6.755e-73
Identity = 132/210 (62.86%), Postives = 160/210 (76.19%), Query Frame = 1
Query:  124 AQKTWELENNIVSMETPPTNSTADTSASDAIFFYDEGAQTKFQQEKPWVNDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSISMLNQQFQEPFLAVVIDPTRTVSAGKS*DGAFRTYPERIQPPDEPISEYQTIP 753
            A KT+ELENNI +++             D +F YD     +F Q KPW  DPHYFK VKISA+ALLKMV+HARSGG +EVMG++ GK + + +I+MD+FALPVEGTETRVNAQ +AYEYMV+Y +  KQ GRLENA+GWYHSHPGYGCWLSGIDV    +NQQ+ EP+L +VIDPTRTVSAGK   GAFRTYP+  +PP+E  SEYQ+IP
Sbjct:    9 ALKTFELENNIQTID------------HDQLFKYDPQQYQQFLQSKPWSKDPHYFKHVKISAIALLKMVMHARSGGKLEVMGMLMGKVENNTMIIMDSFALPVEGTETRVNAQVEAYEYMVEYLELIKQTGRLENALGWYHSHPGYGCWLSGIDVGTQSVNQQYSEPWLGIVIDPTRTVSAGKVEIGAFRTYPQGYKPPNEGPSEYQSIP 206          
BLAST of FC876216 vs. ExPASy Swiss-Prot
Match: CSN5_CAEEL (COP9 signalosome complex subunit 5 OS=Caenorhabditis elegans GN=csn-5 PE=1 SV=1)

HSP 1 Score: 264.618 bits (675), Expect = 4.098e-70
Identity = 126/217 (58.06%), Postives = 157/217 (72.35%), Query Frame = 1
Query:  103 VSMDSSIAQKTWELENNIVSMETPPTNSTADTSASDAIFFYDEGAQTKFQQEKPWVNDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSISMLNQQFQEPFLAVVIDPTRTVSAGKS*DGAFRTYPERIQPPDEPISEYQTIP 753
            V   SS+ Q+ WE ENN+ ++              D+IF Y+   Q + +  KPW  DPHYFK++KISA+ALLKM +HA+ GG +E+MGL+QG+ D ++ I++D FALPVEGTETRVNAQA AYEYM  YS+     GR E  VGWYHSHPGYGCWLSGIDVS   LNQ+FQEP++A+VIDP RT+SAGK   GAFRTYPE  +PPD+  SEYQ+IP
Sbjct:    6 VKPSSSVPQRNWEKENNVQNV--------------DSIFEYNNKQQVEIRNAKPWDKDPHYFKQIKISAIALLKMTMHAKRGGNLEIMGLLQGRIDANSFIILDVFALPVEGTETRVNAQAQAYEYMTVYSEMCDTEGRKEKVVGWYHSHPGYGCWLSGIDVSTQTLNQKFQEPWVAIVIDPLRTMSAGKVDIGAFRTYPEGYRPPDDVPSEYQSIP 208          
The following BLAST results are available for this feature:
BLAST of FC876216 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
CSN5A_ARATH2.818e-9579.81COP9 signalosome complex subunit 5a OS=Arabidopsis... [more]
CSN5B_ARATH2.469e-9178.40COP9 signalosome complex subunit 5b OS=Arabidopsis... [more]
CSN5_XENTR3.131e-7867.14COP9 signalosome complex subunit 5 OS=Xenopus trop... [more]
CSN5_XENLA3.131e-7867.14COP9 signalosome complex subunit 5 OS=Xenopus laev... [more]
CSN5_MOUSE1.554e-7767.14COP9 signalosome complex subunit 5 OS=Mus musculus... [more]
CSN5_HUMAN1.554e-7767.14COP9 signalosome complex subunit 5 OS=Homo sapiens... [more]
CSN5_DROME2.650e-7766.05COP9 signalosome complex subunit 5 OS=Drosophila m... [more]
CSN5_DANRE2.650e-7767.14COP9 signalosome complex subunit 5 OS=Danio rerio ... [more]
CSN5_DICDI6.755e-7362.86COP9 signalosome complex subunit 5 OS=Dictyosteliu... [more]
CSN5_CAEEL4.098e-7058.06COP9 signalosome complex subunit 5 OS=Caenorhabdit... [more]

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Properties
Property NameValue
Genbank descriptionC32001G12EF DevOvary1 Citrus clementina cDNA clone C32001G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876216 ID=FC876216; Name=FC876216; organism=Citrus clementina; type=EST; length=754bp
GATATATAGAAATTAGAATTGCTGTTGGTGTTGTTGGTGTTCGTCTTGTT
TGTTGTTCCAGACAGTGTAGGGTGTAGGCAGAGAGGGAGAGAAAACAACA
TAGTATCGATGGACTCGTCAATAGCGCAAAAGACATGGGAACTGGAAAAC
AACATAGTATCGATGGAGACACCGCCGACAAACTCAACAGCCGACACGTC
AGCATCGGACGCGATTTTCTTCTACGACGAAGGGGCGCAGACCAAGTTCC
AGCAAGAGAAGCCCTGGGTCAATGACCCTCACTACTTCAAGCGCGTGAAG
ATCTCCGCACTCGCCCTCCTCAAGATGGTCGTCCATGCGCGATCCGGTGG
GACCATCGAGGTCATGGGCCTTATGCAAGGCAAAACCGACGGCGACGCCA
TCATTGTCATGGACGCCTTTGCTTTGCCCGTTGAAGGTACCGAAACCAGG
GTTAATGCTCAGGCCGATGCTTATGAATATATGGTCGATTATTCCCAAAC
CAACAAACAGGCCGGACGTCTGGAGAATGCTGTTGGGTGGTACCATTCAC
ATCCTGGCTATGGATGCTGGCTTTCGGGTATTGATGTTTCAATCTCAATG
CTTAATCAGCAGTTTCAGGAGCCATTTTTGGCTGTTGTGATTGATCCTAC
TAGGACTGTTTCTGCTGGGAAAAGTTGAGATGGAGCTTTCAGGACGTATC
CTGAAAGGATACAGCCTCCGGATGAACCCATCTCTGAGTATCAGACCATT
CCTT
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