FC876242
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC876242 vs. ExPASy Swiss-Prot
Match: PP372_ARATH (Pentatricopeptide repeat-containing protein At5g09450, mitochondrial OS=Arabidopsis thaliana GN=At5g09450 PE=2 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 8.979e-43 Identity = 49/78 (62.82%), Postives = 66/78 (84.62%), Query Frame = 1 Query: 406 DSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQS-NLSFNALMYNEMMT 636 D+DYA+RIDL++KVFGI + ERYFEGL + +KT+ETYT+LLH YA +K TE+AE LF+R+ +S +L+F A+ YNEMMT Sbjct: 123 DADYASRIDLISKVFGIDAAERYFEGLDIDSKTAETYTSLLHAYAASKQTERAEALFKRIIESDSLTFGAITYNEMMT 200 HSP 2 Score: 92.4337 bits (228), Expect = 8.979e-43 Identity = 49/105 (46.67%), Postives = 71/105 (67.62%), Query Frame = 2 Query: 92 CQTLKHGRASNTKIKNRPNSDYECFFYSRFLSSGSSQNECLDEETSNSDGKDDLKSRIFRISLPKRSATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALE 406 C+ +G + I+N +S + S+ ++ ++ L EE S+ KDDLKSRIFR+ LPKRSAT V+++W+ EGNQ T++ELR I KELR+++RYKHALE Sbjct: 12 CRLTNNGVLGSNFIRNAESSRF-----SKSYNADAAIGNSLVEE---SEEKDDLKSRIFRLRLPKRSATTVLEKWIGEGNQMTINELREISKELRRTRRYKHALE 108
BLAST of FC876242 vs. ExPASy Swiss-Prot
Match: PP302_ARATH (Pentatricopeptide repeat-containing protein At4g02820, mitochondrial OS=Arabidopsis thaliana GN=At4g02820 PE=2 SV=1) HSP 1 Score: 61.2326 bits (147), Expect = 5.812e-20 Identity = 28/75 (37.33%), Postives = 47/75 (62.67%), Query Frame = 1 Query: 412 DYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMT 636 DYA +DL++K+ G++S E++FE +P + T+LLH Y K ++KAE LFE++ + + L YN M++ Sbjct: 131 DYAVHLDLISKIRGLNSAEKFFEDMPDQMRGHAACTSLLHSYVQNKLSDKAEALFEKMGECGFLKSCLPYNHMLS 205 HSP 2 Score: 57.3806 bits (137), Expect = 5.812e-20 Identity = 29/74 (39.19%), Postives = 42/74 (56.76%), Query Frame = 2 Query: 185 SSGSSQNECLDEETSNSDGKDDLKSRIFRISLPKRSATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALE 406 S G E +++ + G+D L R+ + KRSA I++W EG+ EL I++ELRK +RYKHALE Sbjct: 41 SGGGKGGESANKKETVVGGRDTLGGRLLSLVYTKRSAVVTIRKWKEEGHSVRKYELNRIVRELRKIKRYKHALE 114
BLAST of FC876242 vs. ExPASy Swiss-Prot
Match: PP166_ARATH (Pentatricopeptide repeat-containing protein At2g20710, mitochondrial OS=Arabidopsis thaliana GN=At2g20710 PE=2 SV=1) HSP 1 Score: 59.3066 bits (142), Expect = 2.591e-16 Identity = 28/76 (36.84%), Postives = 44/76 (57.89%), Query Frame = 1 Query: 406 DSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMM 633 + D A R+DL+ KV G+ E++FE +P+ + Y ALL+ YA K KAE++F+ +K+ L YN M+ Sbjct: 106 EGDVAIRLDLIAKVGGLGEAEKFFETIPMERRNYHLYGALLNCYASKKVLHKAEQVFQEMKELGFLKGCLPYNVML 181 HSP 2 Score: 46.9802 bits (110), Expect = 2.591e-16 Identity = 23/57 (40.35%), Postives = 31/57 (54.39%), Query Frame = 2 Query: 236 DGKDDLKSRIFRISLPKRSATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALE 406 D D L+ R+ R P S V+ W+ +GN SEL I+K LRK R+ HAL+ Sbjct: 35 DPYDTLQRRVARSGDPSASIIKVLDGWLDQGNLVKTSELHSIIKMLRKFSRFSHALQ 91
BLAST of FC876242 vs. ExPASy Swiss-Prot
Match: PP334_ARATH (Pentatricopeptide repeat-containing protein At4g21705, mitochondrial OS=Arabidopsis thaliana GN=At4g21705 PE=2 SV=1) HSP 1 Score: 52.7582 bits (125), Expect = 3.045e-13 Identity = 26/75 (34.67%), Postives = 44/75 (58.67%), Query Frame = 1 Query: 409 SDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMM 633 +++A +DL+ +V+G + E YFE L K +TY ALL+ Y + EK+ FE++K+ ++L YN +M Sbjct: 94 TEHAVHLDLIGRVYGFVTAEEYFENLKEQYKNDKTYGALLNCYVRQQNVEKSLLHFEKMKEMGFVTSSLTYNNIM 168 HSP 2 Score: 43.1282 bits (100), Expect = 3.045e-13 Identity = 23/60 (38.33%), Postives = 35/60 (58.33%), Query Frame = 2 Query: 227 SNSDGKDDLKSRIFRISLPKRSATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALE 406 +N K L S+I + PK S +Q WV G + +V+EL I+ +LR+ +R+ HALE Sbjct: 19 TNRVKKTTLYSKISPLGDPKSSVYPELQNWVQCGKKVSVAELIRIVHDLRRRKRFLHALE 78
BLAST of FC876242 vs. ExPASy Swiss-Prot
Match: PPR3_ARATH (Pentatricopeptide repeat-containing protein At1g02150 OS=Arabidopsis thaliana GN=At1g02150 PE=2 SV=2) HSP 1 Score: 53.9138 bits (128), Expect = 1.530e-11 Identity = 30/76 (39.47%), Postives = 42/76 (55.26%), Query Frame = 1 Query: 409 SDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMT 636 SD A ++DL+ KV GI E +F LP + K Y +LL+ Y AK EKAE L ++ + + L +N MMT Sbjct: 137 SDAAIQLDLIGKVRGIPDAEEFFLQLPENFKDRRVYGSLLNAYVRAKSREKAEALLNTMRDKGYALHPLPFNVMMT 212 HSP 2 Score: 36.1946 bits (82), Expect = 1.530e-11 Identity = 18/49 (36.73%), Postives = 28/49 (57.14%), Query Frame = 2 Query: 260 RIFRISLPKRSATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALE 406 +I + P+ A +V+ +W G + T EL ++KELRK +R ALE Sbjct: 72 KISLMEKPELGAASVLNQWEKAGRKLTKWELCRVVKELRKYKRANQALE 120 The following BLAST results are available for this feature:
BLAST of FC876242 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 5
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC876242 ID=FC876242; Name=FC876242; organism=Citrus clementina; type=EST; length=652bpback to top |