FC876242

Overview
NameFC876242
Unique NameFC876242
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length652
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC876242_ssr76 microsatellite FC876242_ssr76:76..87. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC876242 vs. ExPASy Swiss-Prot
Match: PP372_ARATH (Pentatricopeptide repeat-containing protein At5g09450, mitochondrial OS=Arabidopsis thaliana GN=At5g09450 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 8.979e-43
Identity = 49/78 (62.82%), Postives = 66/78 (84.62%), Query Frame = 1
Query:  406 DSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQS-NLSFNALMYNEMMT 636
            D+DYA+RIDL++KVFGI + ERYFEGL + +KT+ETYT+LLH YA +K TE+AE LF+R+ +S +L+F A+ YNEMMT
Sbjct:  123 DADYASRIDLISKVFGIDAAERYFEGLDIDSKTAETYTSLLHAYAASKQTERAEALFKRIIESDSLTFGAITYNEMMT 200          

HSP 2 Score: 92.4337 bits (228), Expect = 8.979e-43
Identity = 49/105 (46.67%), Postives = 71/105 (67.62%), Query Frame = 2
Query:   92 CQTLKHGRASNTKIKNRPNSDYECFFYSRFLSSGSSQNECLDEETSNSDGKDDLKSRIFRISLPKRSATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALE 406
            C+   +G   +  I+N  +S +     S+  ++ ++    L EE   S+ KDDLKSRIFR+ LPKRSAT V+++W+ EGNQ T++ELR I KELR+++RYKHALE
Sbjct:   12 CRLTNNGVLGSNFIRNAESSRF-----SKSYNADAAIGNSLVEE---SEEKDDLKSRIFRLRLPKRSATTVLEKWIGEGNQMTINELREISKELRRTRRYKHALE 108          
BLAST of FC876242 vs. ExPASy Swiss-Prot
Match: PP302_ARATH (Pentatricopeptide repeat-containing protein At4g02820, mitochondrial OS=Arabidopsis thaliana GN=At4g02820 PE=2 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 5.812e-20
Identity = 28/75 (37.33%), Postives = 47/75 (62.67%), Query Frame = 1
Query:  412 DYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMT 636
            DYA  +DL++K+ G++S E++FE +P   +     T+LLH Y   K ++KAE LFE++ +     + L YN M++
Sbjct:  131 DYAVHLDLISKIRGLNSAEKFFEDMPDQMRGHAACTSLLHSYVQNKLSDKAEALFEKMGECGFLKSCLPYNHMLS 205          

HSP 2 Score: 57.3806 bits (137), Expect = 5.812e-20
Identity = 29/74 (39.19%), Postives = 42/74 (56.76%), Query Frame = 2
Query:  185 SSGSSQNECLDEETSNSDGKDDLKSRIFRISLPKRSATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALE 406
            S G    E  +++ +   G+D L  R+  +   KRSA   I++W  EG+     EL  I++ELRK +RYKHALE
Sbjct:   41 SGGGKGGESANKKETVVGGRDTLGGRLLSLVYTKRSAVVTIRKWKEEGHSVRKYELNRIVRELRKIKRYKHALE 114          
BLAST of FC876242 vs. ExPASy Swiss-Prot
Match: PP166_ARATH (Pentatricopeptide repeat-containing protein At2g20710, mitochondrial OS=Arabidopsis thaliana GN=At2g20710 PE=2 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 2.591e-16
Identity = 28/76 (36.84%), Postives = 44/76 (57.89%), Query Frame = 1
Query:  406 DSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMM 633
            + D A R+DL+ KV G+   E++FE +P+  +    Y ALL+ YA  K   KAE++F+ +K+       L YN M+
Sbjct:  106 EGDVAIRLDLIAKVGGLGEAEKFFETIPMERRNYHLYGALLNCYASKKVLHKAEQVFQEMKELGFLKGCLPYNVML 181          

HSP 2 Score: 46.9802 bits (110), Expect = 2.591e-16
Identity = 23/57 (40.35%), Postives = 31/57 (54.39%), Query Frame = 2
Query:  236 DGKDDLKSRIFRISLPKRSATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALE 406
            D  D L+ R+ R   P  S   V+  W+ +GN    SEL  I+K LRK  R+ HAL+
Sbjct:   35 DPYDTLQRRVARSGDPSASIIKVLDGWLDQGNLVKTSELHSIIKMLRKFSRFSHALQ 91          
BLAST of FC876242 vs. ExPASy Swiss-Prot
Match: PP334_ARATH (Pentatricopeptide repeat-containing protein At4g21705, mitochondrial OS=Arabidopsis thaliana GN=At4g21705 PE=2 SV=1)

HSP 1 Score: 52.7582 bits (125), Expect = 3.045e-13
Identity = 26/75 (34.67%), Postives = 44/75 (58.67%), Query Frame = 1
Query:  409 SDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMM 633
            +++A  +DL+ +V+G  + E YFE L    K  +TY ALL+ Y   +  EK+   FE++K+     ++L YN +M
Sbjct:   94 TEHAVHLDLIGRVYGFVTAEEYFENLKEQYKNDKTYGALLNCYVRQQNVEKSLLHFEKMKEMGFVTSSLTYNNIM 168          

HSP 2 Score: 43.1282 bits (100), Expect = 3.045e-13
Identity = 23/60 (38.33%), Postives = 35/60 (58.33%), Query Frame = 2
Query:  227 SNSDGKDDLKSRIFRISLPKRSATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALE 406
            +N   K  L S+I  +  PK S    +Q WV  G + +V+EL  I+ +LR+ +R+ HALE
Sbjct:   19 TNRVKKTTLYSKISPLGDPKSSVYPELQNWVQCGKKVSVAELIRIVHDLRRRKRFLHALE 78          
BLAST of FC876242 vs. ExPASy Swiss-Prot
Match: PPR3_ARATH (Pentatricopeptide repeat-containing protein At1g02150 OS=Arabidopsis thaliana GN=At1g02150 PE=2 SV=2)

HSP 1 Score: 53.9138 bits (128), Expect = 1.530e-11
Identity = 30/76 (39.47%), Postives = 42/76 (55.26%), Query Frame = 1
Query:  409 SDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMT 636
            SD A ++DL+ KV GI   E +F  LP + K    Y +LL+ Y  AK  EKAE L   ++    + + L +N MMT
Sbjct:  137 SDAAIQLDLIGKVRGIPDAEEFFLQLPENFKDRRVYGSLLNAYVRAKSREKAEALLNTMRDKGYALHPLPFNVMMT 212          

HSP 2 Score: 36.1946 bits (82), Expect = 1.530e-11
Identity = 18/49 (36.73%), Postives = 28/49 (57.14%), Query Frame = 2
Query:  260 RIFRISLPKRSATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALE 406
            +I  +  P+  A +V+ +W   G + T  EL  ++KELRK +R   ALE
Sbjct:   72 KISLMEKPELGAASVLNQWEKAGRKLTKWELCRVVKELRKYKRANQALE 120          
The following BLAST results are available for this feature:
BLAST of FC876242 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
PP372_ARATH8.979e-4362.82Pentatricopeptide repeat-containing protein At5g09... [more]
PP302_ARATH5.812e-2037.33Pentatricopeptide repeat-containing protein At4g02... [more]
PP166_ARATH2.591e-1636.84Pentatricopeptide repeat-containing protein At2g20... [more]
PP334_ARATH3.045e-1334.67Pentatricopeptide repeat-containing protein At4g21... [more]
PPR3_ARATH1.530e-1139.47Pentatricopeptide repeat-containing protein At1g02... [more]
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Properties
Property NameValue
Genbank descriptionC32002C03EF DevOvary1 Citrus clementina cDNA clone C32002C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876242 ID=FC876242; Name=FC876242; organism=Citrus clementina; type=EST; length=652bp
GATGTTTCCCATTTTTAAGCTATATTGAGCTGATTTTAGTATCTTTCATG
TCTAAACAGTCACTATTTGACTATATTTCTTTCTTTCTTTTTGTCAAACA
CTTAAACATGGCAGAGCAAGCAACACAAAAATCAAGAACCGCCCTAATTC
CGATTACGAGTGTTTCTTTTATTCAAGATTTCTCTCTTCTGGATCTTCGC
AAAACGAATGCCTCGACGAAGAGACTTCGAATTCGGATGGAAAGGATGAT
CTCAAATCCAGAATCTTCAGAATTAGTCTGCCAAAACGTAGCGCAACTAA
CGTTATTCAGAGGTGGGTCAGCGAAGGGAACCAAGCTACCGTTTCTGAGC
TTCGACACATCTTGAAAGAACTCAGAAAGTCTCAGCGTTACAAGCATGCC
CTCGAGACTCTGACTATGCTACCCGTATTGACTTGATGACAAAAGTATTT
GGTATTCATTCGGGTGAGCGCTACTTTGAAGGGCTTCCTCTCTCGGCAAA
AACTAGTGAAACATACACTGCTCTCCTCCACTTGTATGCTGGGGCGAAAT
GGACCGAGAAGGCCGAAGAGCTTTTTGAAAGAGTAAAGCAGTCAAACCTG
TCCTTCAATGCCCTTATGTATAATGAGATGATGACTTTNGTACATGTCAG
TT
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