FC876244

Overview
NameFC876244
Unique NameFC876244
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length568
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15052 contig Ccv1_Contig15052:108..675. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876244 vs. ExPASy Swiss-Prot
Match: ASP_THECC (21 kDa seed protein OS=Theobroma cacao GN=ASP PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.092e-12
Identity = 50/189 (26.46%), Postives = 93/189 (49.21%), Query Frame = 2
Query:    2 SEPILDVYGNQVDSSHRYYLVSALWGVKTGGGISADKGKNGQCPTDVIQLSPKDKRGKNLGLLPYDN-STIVRESTNIKLKFSRVSSLQQCNKDSLWKVDNDNASLGKQFITIGEGK------TCQNFFKLEKVSASIFDMKIALDIPCLYKIVHCSTLVNGSCDTLCKDVGVSNVDGVQRLVVVDDND 547
            + P+LD  G+++ +  +YY++S++ G   GGG++  +     CP  V+Q       G  +     D+   +VR ST++ ++F  +   + C+  ++W++DN + S GK ++T    K      T  ++FK+EK                 YK   C ++ + SC TLC D+G  + D  Q  + + DN+
Sbjct:   28 NSPVLDTDGDELQTGVQYYVLSSISGA-GGGGLALGRATGQSCPEIVVQRRSDLDNGTPVIFSNADSKDDVVRVSTDVNIEFVPIRD-RLCSTSTVWRLDNYDNSAGKWWVTTDGVKGEPGPNTLCSWFKIEKAGV------------LGYKFRFCPSVCD-SCTTLCSDIGRHSDDDGQIRLALSDNE 201          
BLAST of FC876244 vs. ExPASy Swiss-Prot
Match: MIRA_RICDU (Miraculin OS=Richadella dulcifica PE=1 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 1.482e-11
Identity = 57/188 (30.32%), Postives = 91/188 (48.40%), Query Frame = 2
Query:    8 PILDVYGNQVDSSHRYYLVSALWGVKTGGGISADKGK-NGQ--CPTDVIQLSPKDKRGKNLGLLPYD-NSTIVRESTNIKLKFSRVSSLQQCNKDSLWKVDNDNASLGKQFITIGEGK------TCQNFFKLEKVSASIFDMKIALDIPCLYKIVHCSTLVNGSCDTLCKDVGV-SNVDGVQRLVVVD 538
            P+LD+ G ++ +   YY+V  L     GGG++      NG   CP  V+Q   +    + L   P +    +VR ST++ + FS     +  +  ++W++D  + S G+ F+TIG  K      T  ++FK+E+   S F           YK+V C T V GSC   C DVG+  +  G +RL + D
Sbjct:   35 PVLDIDGEKLRTGTNYYIVPVLRD--HGGGLTVSATTPNGTFVCPPRVVQTRKEVDHDRPLAFFPENPKEDVVRVSTDLNINFSAFMPCRWTSS-TVWRLDKYDESTGQYFVTIGGVKGNPGPETISSWFKIEEFCGSGF-----------YKLVFCPT-VCGSCKVKCGDVGIYIDQKGRRRLALSD 207          
The following BLAST results are available for this feature:
BLAST of FC876244 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
ASP_THECC5.092e-1226.4621 kDa seed protein OS=Theobroma cacao GN=ASP PE=2... [more]
MIRA_RICDU1.482e-1130.32Miraculin OS=Richadella dulcifica PE=1 SV=3[more]
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Properties
Property NameValue
Genbank descriptionC32002C06EF DevOvary1 Citrus clementina cDNA clone C32002C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876244 ID=FC876244; Name=FC876244; organism=Citrus clementina; type=EST; length=568bp
ATCTGAACCTATCTTAGATGTCTATGGCAACCAGGTGGACTCCAGCCACA
GGTATTATCTTGTCTCAGCACTCTGGGGAGTTAAAACCGGCGGTGGAATT
AGCGCGGACAAAGGCAAAAATGGACAGTGTCCAACGGATGTTATCCAATT
AAGTCCTAAGGACAAAAGGGGAAAGAATTTAGGTTTACTTCCGTATGACA
ATTCCACAATTGTCCGGGAATCCACTAATATTAAATTGAAATTCTCAAGA
GTTTCTTCTCTTCAGCAGTGTAACAAAGATTCGTTGTGGAAAGTTGACAA
CGATAACGCTTCATTAGGAAAGCAGTTTATAACAATCGGTGAAGGTAAAA
CGTGTCAAAATTTTTTTAAACTTGAGAAAGTTAGTGCATCAATATTTGAT
ATGAAGATAGCACTAGACATTCCCTGTCTATACAAAATTGTTCATTGTTC
AACACTTGTTAATGGTTCTTGCGATACACTCTGCAAAGACGTTGGCGTTT
CTAATGTGGATGGCGTCCAACGTCTAGTTGTGGTTGATGATAATGATCAG
CCAAATCTGCCTTTGCCT
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