FC876245

Overview
NameFC876245
Unique NameFC876245
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length537
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8357 contig Ccv1_Contig8357:280..817. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876245 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 7.811e-41
Identity = 77/105 (73.33%), Postives = 86/105 (81.90%), Query Frame = 2
Query:  218 QKSRSVAGATKASFXXXXXXXXXXXXATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPE 532
            QK+ S+ GATKASF            A  G+RSV+VSA AADP+RPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPE+L+WN Q+E+VH RWAMLGAAGIFIPE
Sbjct:   21 QKNGSIVGATKASFLGGKRLRVSKFIAPVGSRSVAVSAVAADPDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPE 125          
BLAST of FC876245 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 6.843e-37
Identity = 70/106 (66.04%), Postives = 79/106 (74.53%), Query Frame = 2
Query:  218 QKSRSVAGATKASFXXXXXXXXXXXXATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPEL 535
            +++ S+ G TKASF             T   RS +    AADP+RPLWFPGSTPP WLDGSLPGDFGFDPLGL SDPE+LRWN Q+E+VHCRWAMLGAAGIFIPEL
Sbjct:   21 RRNGSIVGTTKASFLGGRRLRVSKYSTTPTARSATTVCVAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPEL 126          
BLAST of FC876245 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.585e-17
Identity = 46/104 (44.23%), Postives = 59/104 (56.73%), Query Frame = 2
Query:  233 VAGATKASFXXXXXXXXXXXXATAGTRSVSVSAAAADPNRPLWFPGST------PPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFI 526
            ++G  K+S              +  +R + V AAAA P +  W P          PEWLDGSLPGDFGFDPLGLG DP  L+W  ++E++H RWAML   GIF+
Sbjct:   19 LSGGKKSSQSLLFVNSKVGAGVSTTSRKLVVVAAAAAPKKS-WIPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMLAVLGIFV 121          
BLAST of FC876245 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.611e-17
Identity = 38/59 (64.41%), Postives = 45/59 (76.27%), Query Frame = 2
Query:  359 WFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPEL 535
            W PG   P +L GSLPGD GFDPLGL  DPE LRW VQ+E+V+ RWAMLG AG+ +PE+
Sbjct:   56 WLPGLASPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEV 114          
BLAST of FC876245 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.027e-16
Identity = 38/74 (51.35%), Postives = 50/74 (67.57%), Query Frame = 2
Query:  314 SVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPEL 535
            S   S+   +  +  W PG   P++L GSL GD GFDPLGL  DPE L+W VQ+E+V+ RWAMLG AG+ +PE+
Sbjct:   42 SAKTSSFKVEAKKGEWLPGLASPDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEV 115          
BLAST of FC876245 vs. ExPASy Swiss-Prot
Match: CB4B_SOLLC (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum GN=CAP10B PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.989e-16
Identity = 40/74 (54.05%), Postives = 48/74 (64.86%), Query Frame = 2
Query:  323 VSAAAADPNRPLWFPGS------TPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFI 526
            V+AAA  P +  W P          PEWLDGSLPGDFGFDPLGLG DP  L+W  ++E++H RWAM    GIF+
Sbjct:   44 VAAAAVAPKKS-WIPAVKSGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFV 116          
BLAST of FC876245 vs. ExPASy Swiss-Prot
Match: CB120_HORVU (Chlorophyll a-b binding protein 1B-20, chloroplastic (Fragment) OS=Hordeum vulgare GN=LHC Ib-20 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.989e-16
Identity = 41/75 (54.67%), Postives = 50/75 (66.67%), Query Frame = 2
Query:  311 RSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPEL 535
            R V+V A  +      W PG   P +LDGSL GD GFDPL L  DPE LRW VQ+++V+ RWAMLG AG+ IPE+
Sbjct:   26 RDVAVQAKGS------WLPGLQSPAYLDGSLEGDNGFDPLALAEDPEDLRWFVQADVVNGRWAMLGVAGMLIPEV 94          
BLAST of FC876245 vs. ExPASy Swiss-Prot
Match: CB4A_SOLLC (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.305e-15
Identity = 40/81 (49.38%), Postives = 50/81 (61.73%), Query Frame = 2
Query:  302 AGTRSVSVSAAAADPNRPLWFPGS------TPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFI 526
            A  +  +V AAAA  +   W P          PEWLDGSLPGD+GFDPLGLG DP  L+W  ++E++H RWAM    GIF+
Sbjct:   39 ATPKRFTVLAAAAKKS---WIPAVRGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFV 116          
BLAST of FC876245 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 5.637e-15
Identity = 34/58 (58.62%), Postives = 39/58 (67.24%), Query Frame = 2
Query:  359 WFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPE 532
            W PG   P +LDGS PGDFGFD LGLG  P  L    +SE++HCRWAML   GI +PE
Sbjct:   49 WMPGQPRPSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPE 106          
BLAST of FC876245 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.615e-15
Identity = 35/58 (60.34%), Postives = 39/58 (67.24%), Query Frame = 2
Query:  359 WFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPE 532
            WFPG   P  LDGS PGDFGFDPLGL + PE      +SEI HCRWAML   G+ +PE
Sbjct:   48 WFPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPE 105          
The following BLAST results are available for this feature:
BLAST of FC876245 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
CB12_PETHY7.811e-4173.33Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB12_SOLLC6.843e-3766.04Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB4_SPIOL1.585e-1744.23Chlorophyll a-b binding protein CP24, chloroplasti... [more]
CB24_PEA4.611e-1764.41Chlorophyll a-b binding protein P4, chloroplastic ... [more]
CB24_ARATH1.027e-1651.35Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB4B_SOLLC2.989e-1654.05Chlorophyll a-b binding protein CP24 10B, chloropl... [more]
CB120_HORVU2.989e-1654.67Chlorophyll a-b binding protein 1B-20, chloroplast... [more]
CB4A_SOLLC3.305e-1549.38Chlorophyll a-b binding protein CP24 10A, chloropl... [more]
CB11_SOLLC5.637e-1558.62Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
CB121_HORVU9.615e-1560.34Chlorophyll a-b binding protein 1B-21, chloroplast... [more]

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Properties
Property NameValue
Genbank descriptionC32002C07EF DevOvary1 Citrus clementina cDNA clone C32002C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876245 ID=FC876245; Name=FC876245; organism=Citrus clementina; type=EST; length=537bp
GAAGCCAGTTAGAGATCCACTCTTCTATCCTTAAAGATAAGCCCCGGCAT
CCATTAACATTAACAAGTTTTTGTATCTTCTGTTCACTGCCAATTGTATT
CTACTTTACACGCACACAAACGCCAGTCATAATTTTGCTGAAAGCCTTTG
CCTGGTAGTAAAAATGGCTTCCGTTTGTGCTTCCCCTGCCGTTGCAGCCA
TCTCATCCCCCAGTTCTCAGAAGAGTAGATCAGTTGCGGGAGCAACAAAG
GCTTCTTTCCTTGGTGGGAAGAAGCTGAAATTGAGAAAAAACGGAGCAAC
AGCGGGAACACGATCGGTTTCAGTGAGTGCGGCTGCAGCTGATCCTAACA
GGCCCCTCTGGTTCCCAGGCAGCACTCCTCCTGAATGGCTCGATGGTAGC
CTCCCCGGAGACTTCGGCTTCGATCCTCTTGGTCTTGGATCTGATCCTGA
GACGCTGAGATGGAACGTGCAATCAGAAATTGTGCACTGCAGATGGGCAA
TGTTAGGAGCTGCAGGAATTTTCATTCCGGAATTGTT
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