FC876248 | Citrus Genome Database

Overview


Name	FC876248
Unique Name	FC876248
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	654

Libraries


Library Name	Type
DevOvary1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Ccv1_Contig11648	contig	Ccv1_Contig11648:356..1009.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

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BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: PABP2_ARATH (Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1)

HSP 1 Score: 323.168 bits (827), Expect = 7.504e-88
Identity = 157/195 (80.51%), Postives = 178/195 (91.28%), Query Frame = 2

Query:   68 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIXQSKFTNVYVKNLSESTT 652
            FG TSLYVGDL+ NVTDSQL+D F QMG VV+VRVCRDL TRRSLGYGYVNF+N Q+AARA++ LN+ PL GKPIRVMYSHRDPS+R+SGAGNIFIKNLD++IDHKALHDTFS+FGNI+SCKVA D +GQSKGYGFVQ+ NEESAQKAIEKLNGMLLNDKQVYVG FLR+QERD+   ++KFTNVYVKNL+ESTT
Sbjct:   33 FGNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQELNYIPLYGKPIRVMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTT 227

HSP 2 Score: 129.028 bits (323), Expect = 2.077e-29
Identity = 74/208 (35.58%), Postives = 117/208 (56.25%), Query Frame = 2

Query:   71 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV----MYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI----------XQSKF--TNVYVKNLSES 646
            G  ++++ +L+ ++    L+D F+  G +VS +V  D S+ +S GYG+V ++N + A +A+E LN   LN K + V        RD +  K+   N+++KNL ++     L + F  +G I S  V  D  G+SKG+GFV F+N + A +A+E LNG   +DK+ YVG   +K ER+TE+             KF  +N+YVKNL  S
Sbjct:  122 GAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVD-SSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPS 328

HSP 3 Score: 115.931 bits (289), Expect = 1.820e-25
Identity = 72/198 (36.36%), Postives = 109/198 (55.05%), Query Frame = 2

Query:   77 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV----MYSHRDPSLR------------KSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIXQSKFTNV 622
            T++YV +L  + TD  L + F + G++ S  V +D    +S G+G+VNF NA +AARA+E LN    + K   V      S R+  LR            K  + N+++KNLD +I  + L + FS FG + S KV  D NG SKG GFV F   E A +A+ +L+G ++  K +YV    RK++R   + Q++F+ V
Sbjct:  215 TNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKD-GEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRKEDRRVRL-QAQFSQV 410

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BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: PABP3_ARATH (Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3 PE=2 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 5.591e-67
Identity = 126/189 (66.67%), Postives = 152/189 (80.42%), Query Frame = 2

Query:   77 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQE--RDTEIXQSKFTNVYVKNL 637
            +SLY GDL+  VT++ L+DLF  +  VVSVRVCRD   RRSLGY Y+NFSN  +A RA+E LN+TPL  +PIR+M S+RDPS R SG GNIFIKNLD +ID+KAL +TFS+FG ILSCKVA D+ G+SKGYGFVQF+ EESAQ AI+KLNGML+NDKQV+VGHF+R+QE  RD      +FTNVYVKNL
Sbjct:   49 SSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRD-QNRRSLGYAYINFSNPNDAYRAMEALNYTPLFDRPIRIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNL 236

HSP 2 Score: 120.168 bits (300), Expect = 9.648e-27
Identity = 71/210 (33.81%), Postives = 113/210 (53.81%), Query Frame = 2

Query:   71 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKP------IRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI------------XQSKFTNVYVKNLSES 646
            G  ++++ +L+A++ +  L++ F+  G ++S +V  D+ T RS GYG+V F   + A  A++ LN   +N K       IR     RD +       N+++KNL K I    L  TF  FG I S  V  D +G S+ +GFV F+  E+A  A+EK+NG+ L D  +YVG   +K ER+ E+             +S+  N+Y+KNL +S
Sbjct:  134 GKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDV-TGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDS 342

HSP 3 Score: 103.219 bits (256), Expect = 1.220e-21
Identity = 63/198 (31.82%), Postives = 105/198 (53.03%), Query Frame = 2

Query:   77 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV----MYSHRDPSLR------------KSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIXQSKFTNV 622
            T++YV +L   + + +L   F + G + S  V RD S   S  +G+VNF   + AA A+E +N   L    + V      S R+  LR            KS   N+++KNLD ++D + L + FS +GN+ S KV  +  G S+G+GFV + N E A +A+ ++NG ++  K +Y+    RK++R   + Q+ F+ +
Sbjct:  229 TNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGN-SRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQRKEDRRAHL-QALFSQI 424

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BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: PABP_COCIM (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Coccidioides immitis GN=PAB1 PE=3 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 3.624e-66
Identity = 118/195 (60.51%), Postives = 157/195 (80.51%), Query Frame = 2

Query:   74 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIXQSK--FTNVYVKNLSESTT 652
            + SLYVG+L+ +VT++ L++LF+ +GQV S+RVCRD  TRRSLGY YVN++N  +  RALE LN+T + G+P R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGNILSCKVA D  G SKGYGFV ++  E+AQ AI+ +NGMLLNDK+V+VGH + K++R ++  + K  FTNVYVKN+ + TT
Sbjct:   54 SASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFVGHHIAKKDRQSKFEEMKANFTNVYVKNIDQDTT 248

HSP 2 Score: 103.99 bits (258), Expect = 7.155e-22
Identity = 63/210 (30.00%), Postives = 115/210 (54.76%), Query Frame = 2

Query:   71 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY--SHRDPSLR----KSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIXQ----------SKF--TNVYVKNLSE 643
            G  ++++ +L+  + +  L+D F   G ++S +V +D     S GYG+V++  A+ A  A++ +N   LN K + V +  + +D   +    K+   N+++KN+D+    +   D F  FG I S  +A D  +G+S+G+GFV F + ++A  A+E LN      +++YVG   +K ER+ E+ +          SK+   N+Y+KNLS+
Sbjct:  141 GQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFVGHHIAKKDRQSKFEEMKANFTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVEALNDKDFKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSD 349

HSP 3 Score: 88.9669 bits (219), Expect = 2.382e-17
Identity = 64/246 (26.02%), Postives = 106/246 (43.09%), Query Frame = 2

Query:   77 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPI---RVMYSH-RDPSLRKSGAG------------NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQS-----------------------------------------------------KGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIXQS 607
            T++YV +++ + T+ +  DLF + G++ S  + RD  + +S G+G+VNF++   AA A+E LN     G+ +   R    H R+  LRK                N++IKNL   ID + L + FS++G I S KV  D   +S                                                     KG+GFV F + + A KA+ ++N  +++ K +YV    RK  R +++  S
Sbjct:  236 TNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVEALNDKDFKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLRELFSSYGTITSAKVMRDFAPESTSDSEKEAKKDSKEPETKEEEPKDEAGDNAENKDNKENKAESKKSEKKPLGKSKGFGFVCFSSPDEASKAVTEMNQRMVHGKPLYVALAQRKDVRRSQLEAS 481

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BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: PABP_ASPOR (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus oryzae GN=pab1 PE=3 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 8.073e-66
Identity = 117/195 (60.00%), Postives = 155/195 (79.49%), Query Frame = 2

Query:   74 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIXQSK--FTNVYVKNLSESTT 652
            + SLYVG+L+ +VT++ LY+LF+ +GQV S+RVCRD  TRRSLGY YVN++N  +  RALE LN+T + GKP R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGNILSCKVA D  G SKGYGFV ++  E+A  AI+ +NGMLLNDK+V+VGH + K++R ++  + K  FTNVY+KN+ +  T
Sbjct:   48 SASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQDVT 242

HSP 2 Score: 111.694 bits (278), Expect = 3.431e-24
Identity = 64/209 (30.62%), Postives = 118/209 (56.46%), Query Frame = 2

Query:   71 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY--SHRDPSLR----KSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIXQ----------SKF--TNVYVKNLSE 643
            G  ++++ +L++ + +  L+D F   G ++S +V +D     S GYG+V++  A+ A  A++ +N   LN K + V +  S +D   +    K+   N++IKN+D+ +  +   + F  FG I S  ++ D  G+S+G+GFV F   ESAQ A++++N   +  +++YVG   +K ER+ E+ +          SK+   N+YVKNL++
Sbjct:  135 GQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQDVTEEEFRELFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVDEMNEKEIRTQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTD 342

[Close]

BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: PABP_SCHPO (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Schizosaccharomyces pombe GN=pab1 PE=1 SV=2)

HSP 1 Score: 249.595 bits (636), Expect = 1.054e-65
Identity = 120/195 (61.54%), Postives = 152/195 (77.95%), Query Frame = 2

Query:   74 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT--EIXQSKFTNVYVKNLSESTT 652
            + SLYVG+L+ +VT++ L++LFN +G V S+RVCRD  TRRSLGY YVNF N ++  +AL+ LN+T + G+P R+M+S RDPSLRK G GN+FIKNLD AID+KALHDTFSAFG ILSCKVA D  G +KGYGFV FD+ ESA  AIE +NGMLLNDK+VYVGH + ++ER +  E  ++ FTNVY+KNL    T
Sbjct:   79 SASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDTEIT 273

HSP 2 Score: 112.464 bits (280), Expect = 2.012e-24
Identity = 66/209 (31.58%), Postives = 115/209 (55.02%), Query Frame = 2

Query:   71 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY--SHRDPSLR----KSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIXQ----------SKF--TNVYVKNLSE 643
            GT ++++ +L+  + +  L+D F+  G+++S +V  D     + GYG+V+F + + A  A+E +N   LN K + V +  S R+   +    K+   N++IKNLD  I  +   D F  FG I S  +  D N + +G+GFV + N E AQKA+++LN      K++YVG   +K ER+ E+ +          +K+   N+++KNL +
Sbjct:  166 GTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVD-ELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQD 373

HSP 3 Score: 112.079 bits (279), Expect = 2.627e-24
Identity = 65/190 (34.21%), Postives = 106/190 (55.79%), Query Frame = 2

Query:   77 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPI---RVMYSH-RDPSLRKS------------GAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 598
            T++Y+ +L+  +T+ +  DLF Q G++ S+ + +D + +   G+G+VN++N + A +A++ LN     GK +   R    H R+  LRK                N+FIKNL   +D + L   FSAFG I S K+ TD  G+SKG+GFV +   E A KA+ ++N  +L  K +YV    RK+ R +++
Sbjct:  261 TNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPR-GFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQRKEVRRSQL 449

[Close]

BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: PABP_NEOFI (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=pab1 PE=3 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 1.054e-65
Identity = 117/195 (60.00%), Postives = 155/195 (79.49%), Query Frame = 2

Query:   74 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIXQSK--FTNVYVKNLSESTT 652
            + SLYVG+L+ +VT++ LY+LF+ +GQV S+RVCRD  TRRSLGY YVN++N  +  RALE LN+T + GKP R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGNILSCKVA D  G SKGYGFV ++  E+A  AI+ +NGMLLNDK+V+VGH + K++R ++  + K  FTNVY+KN+ +  T
Sbjct:   51 SASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQEVT 245

HSP 2 Score: 110.923 bits (276), Expect = 5.853e-24
Identity = 64/209 (30.62%), Postives = 117/209 (55.98%), Query Frame = 2

Query:   71 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY--SHRDPSLR----KSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIXQ----------SKF--TNVYVKNLSE 643
            G  ++++ +L+A + +  L+D F   G ++S +V +D     S GYG+V++  A+ A  A++ +N   LN K + V +  S +D   +    K+   N++IKN+D+ +  +     F  FG I S  ++ D  G+S+G+GFV F   +SAQ A++++N   +  +++YVG   +K ER+ E+ +          SK+   N+YVKNL++
Sbjct:  138 GQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTD 345

HSP 3 Score: 87.0409 bits (214), Expect = 9.051e-17
Identity = 62/238 (26.05%), Postives = 104/238 (43.70%), Query Frame = 2

Query:   77 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPI---RVMYSH-RDPSLRKSGAG------------NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD---------------------------------------------LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIXQS 607
            T++Y+ +++  VTD +   +F + G++ S  + RD    +S G+G+VNFS    A  A++ +N   + G+ +   R    H R+  LRK                N+++KNL   +D + L + FS FG I S KV  D                                             + G+SKG+GFV F + + A KA+ ++N  ++N K +YV    RK  R +++  S
Sbjct:  233 TNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRD-QEGKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFSPFGTITSAKVMRDTVTAGETSESEKEKESNKENEKEGEEKTEEKPKESEEEAKKTEKKILGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEAS 469

[Close]

BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: PABP_ASPFU (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus fumigatus GN=pab1 PE=3 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 1.054e-65
Identity = 117/195 (60.00%), Postives = 155/195 (79.49%), Query Frame = 2

Query:   74 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIXQSK--FTNVYVKNLSESTT 652
            + SLYVG+L+ +VT++ LY+LF+ +GQV S+RVCRD  TRRSLGY YVN++N  +  RALE LN+T + GKP R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGNILSCKVA D  G SKGYGFV ++  E+A  AI+ +NGMLLNDK+V+VGH + K++R ++  + K  FTNVY+KN+ +  T
Sbjct:   51 SASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQEVT 245

HSP 2 Score: 110.923 bits (276), Expect = 5.853e-24
Identity = 64/209 (30.62%), Postives = 117/209 (55.98%), Query Frame = 2

Query:   71 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY--SHRDPSLR----KSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIXQ----------SKF--TNVYVKNLSE 643
            G  ++++ +L+A + +  L+D F   G ++S +V +D     S GYG+V++  A+ A  A++ +N   LN K + V +  S +D   +    K+   N++IKN+D+ +  +     F  FG I S  ++ D  G+S+G+GFV F   +SAQ A++++N   +  +++YVG   +K ER+ E+ +          SK+   N+YVKNL++
Sbjct:  138 GQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTD 345

HSP 3 Score: 86.2705 bits (212), Expect = 1.544e-16
Identity = 62/240 (25.83%), Postives = 104/240 (43.33%), Query Frame = 2

Query:   77 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPI---RVMYSH-RDPSLRKSGAG------------NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-----------------------------------------------LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIXQS 607
            T++Y+ +++  VTD +   +F + G++ S  + RD    +S G+G+VNFS    A  A++ +N   + G+ +   R    H R+  LRK                N+++KNL   +D + L + FS FG I S KV  D                                               + G+SKG+GFV F + + A KA+ ++N  ++N K +YV    RK  R +++  S
Sbjct:  233 TNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRD-QEGKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFSPFGTITSAKVMRDTVTTGETSESEKEKEKESNKENEKEGEEKTEEKPKESEEEPKKTEKKILGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEAS 471

[Close]

BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: PABP_NEUCR (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Neurospora crassa GN=pab-1 PE=3 SV=1)

HSP 1 Score: 248.825 bits (634), Expect = 1.799e-65
Identity = 116/195 (59.49%), Postives = 158/195 (81.03%), Query Frame = 2

Query:   74 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIXQSK--FTNVYVKNLSESTT 652
            + SLYVG+L+ +VT++ L++LF+Q+G V S+RVCRD  TRRSLGY YVN++   +  +ALE LN+T + G+P R+M+S RDP+LRK+GAGNIFIKNLD AID+KALHDTF+AFGNILSCKVA D +G SKGYGFV ++ +E+A +AI+ +NGMLLN+K+VYVGH + K++R ++  + K  FTNVYVKN++   T
Sbjct:   59 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEELNYTLIKGRPCRIMWSQRDPALRKTGAGNIFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNVYVKNINNEVT 253

HSP 2 Score: 108.997 bits (271), Expect = 2.224e-23
Identity = 60/211 (28.44%), Postives = 113/211 (53.55%), Query Frame = 2

Query:   71 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSL--------RKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIXQS------------KFTNVYVKNLSE 643
            G  ++++ +L+A + +  L+D F   G ++S +V +D     S GYG+V++   + A++A++ +N   LN K + V   H  P           K+   N+++KN++  +  +   + F+ FG + S  +A D  G+S+G+GFV F   E+A +A+++LNG     + +YVG   +K ER+ E+ +S            +  N+Y+KNL +
Sbjct:  146 GAGNIFIKNLDAAIDNKALHDTFAAFGNILSCKVAQD-EHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYV--GHHIPKKDRQSKFEEMKANFTNVYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQEGKSRGFGFVNFTTHEAAAQAVDELNGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLGD 353

[Close]

BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: PABP1_RAT (Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2 SV=1)

HSP 1 Score: 248.825 bits (634), Expect = 1.799e-65
Identity = 119/190 (62.63%), Postives = 153/190 (80.53%), Query Frame = 2

Query:   80 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI--XQSKFTNVYVKNLSE 643
            SLYVGDL  +VT++ LY+ F+  G ++S+RVCRD+ TRRSLGY YVNF    +A RAL+ +NF  + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFGNILSCKV  D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F  ++ER+ E+     +FTNVY+KN  E
Sbjct:   12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGE 200

HSP 2 Score: 130.954 bits (328), Expect = 5.466e-30
Identity = 77/209 (36.84%), Postives = 119/209 (56.94%), Query Frame = 2

Query:   71 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV-MYSHRDPSLRKSGAG-----NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI-------XQSKFT-----NVYVKNLSE 643
            G  ++++ +L+ ++ +  LYD F+  G ++S +V  D     S GYG+V+F   + A RA+E +N   LN + + V  +  R     + GA      N++IKN  + +D + L + F  FG  LS KV TD +G+SKG+GFV F+  E AQKA++++NG  LN KQ+YVG   +K ER TE+        Q + T     N+YVKNL +
Sbjct:   97 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303

HSP 3 Score: 111.309 bits (277), Expect = 4.482e-24
Identity = 70/205 (34.15%), Postives = 113/205 (55.12%), Query Frame = 2

Query:   77 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHR-----------------DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIXQSKFTNVYVKNLS 640
            T++Y+ +   ++ D +L +LF + G  +SV+V  D S + S G+G+V+F   ++A +A++ +N   LNGK I V  + +                 D   R  G  N+++KNLD  ID + L   FS FG I S KV  +  G+SKG+GFV F + E A KA+ ++NG ++  K +YV    RK+ER     Q+  TN Y++ ++
Sbjct:  191 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGK-SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER-----QAHLTNQYMQRMA 387

[Close]

BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: PABP1_HUMAN (Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2)

HSP 1 Score: 248.825 bits (634), Expect = 1.799e-65
Identity = 119/190 (62.63%), Postives = 153/190 (80.53%), Query Frame = 2

Query:   80 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI--XQSKFTNVYVKNLSE 643
            SLYVGDL  +VT++ LY+ F+  G ++S+RVCRD+ TRRSLGY YVNF    +A RAL+ +NF  + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFGNILSCKV  D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F  ++ER+ E+     +FTNVY+KN  E
Sbjct:   12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGE 200

HSP 2 Score: 132.494 bits (332), Expect = 1.879e-30
Identity = 78/209 (37.32%), Postives = 119/209 (56.94%), Query Frame = 2

Query:   71 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV-MYSHRDPSLRKSGAG-----NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI-------XQSKFT-----NVYVKNLSE 643
            G  ++++ +L+ ++ +  LYD F+  G ++S +V  D     S GYG+V+F   + A RA+E +N   LN + + V  +  R     + GA      N++IKN  + +D + L D F  FG  LS KV TD +G+SKG+GFV F+  E AQKA++++NG  LN KQ+YVG   +K ER TE+        Q + T     N+YVKNL +
Sbjct:   97 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303

HSP 3 Score: 112.849 bits (281), Expect = 1.540e-24
Identity = 71/205 (34.63%), Postives = 113/205 (55.12%), Query Frame = 2

Query:   77 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHR-----------------DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIXQSKFTNVYVKNLS 640
            T++Y+ +   ++ D +L DLF + G  +SV+V  D S + S G+G+V+F   ++A +A++ +N   LNGK I V  + +                 D   R  G  N+++KNLD  ID + L   FS FG I S KV  +  G+SKG+GFV F + E A KA+ ++NG ++  K +YV    RK+ER     Q+  TN Y++ ++
Sbjct:  191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGK-SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER-----QAHLTNQYMQRMA 387

The following BLAST results are available for this feature:

BLAST of FC876248 vs. ExPASy Swiss-Prot

BLAST of FC876248 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175


Match Name	E-value	Identity	Description
PABP2_ARATH	7.504e-88	80.51	Polyadenylate-binding protein 2 OS=Arabidopsis tha...	[more]
PABP3_ARATH	5.591e-67	66.67	Polyadenylate-binding protein 3 OS=Arabidopsis tha...	[more]
PABP_COCIM	3.624e-66	60.51	Polyadenylate-binding protein, cytoplasmic and nuc...	[more]
PABP_ASPOR	8.073e-66	60.00	Polyadenylate-binding protein, cytoplasmic and nuc...	[more]
PABP_SCHPO	1.054e-65	61.54	Polyadenylate-binding protein, cytoplasmic and nuc...	[more]
PABP_NEOFI	1.054e-65	60.00	Polyadenylate-binding protein, cytoplasmic and nuc...	[more]
PABP_ASPFU	1.054e-65	60.00	Polyadenylate-binding protein, cytoplasmic and nuc...	[more]
PABP_NEUCR	1.799e-65	59.49	Polyadenylate-binding protein, cytoplasmic and nuc...	[more]
PABP1_RAT	1.799e-65	62.63	Polyadenylate-binding protein 1 OS=Rattus norvegic...	[more]
PABP1_HUMAN	1.799e-65	62.63	Polyadenylate-binding protein 1 OS=Homo sapiens GN...	[more]

Pages

Properties


Property Name	Value
Genbank description	C32002D03EF DevOvary1 Citrus clementina cDNA clone C32002D03, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC876248 ID=FC876248; Name=FC876248; organism=Citrus clementina; type=EST; length=654bp
ATTTGAGATGGCTCAGGTTCAAGCTCAGGGGCAGAACGTGAACGGAGGTG
GGGCCAATGCGAATCAATTCGGGACGACGTCGCTTTACGTCGGGGATCTG
GAGGCGAACGTGACGGATTCGCAGCTGTACGATCTGTTTAATCAAATGGG
TCAAGTGGTTTCGGTTCGGGTTTGTAGGGACTTGTCGACCCGACGATCTC
TCGGTTACGGCTACGTTAACTTCAGTAACGCACAGGAAGCTGCAAGGGCA
TTGGAGATGCTGAACTTCACACCTCTGAATGGAAAGCCCATTAGGGTTAT
GTATTCTCATCGTGACCCAAGTCTTCGCAAAAGTGGCGCAGGGAATATTT
TCATTAAGAACCTAGATAAGGCCATTGATCACAAAGCTTTGCACGATACC
TTTTCTGCTTTTGGGAACATTCTCTCTTGCAAGGTTGCTACAGACCTCAA
TGGTCAGTCAAAGGGCTATGGATTTGTACAATTTGACAATGAGGAGTCTG
CCCAAAAAGCTATTGAGAAGTTGAACGGTATGTTATTGAATGACAAGCAA
GTTTATGTTGGACATTTCCTCCGCAAGCAGGAGAGAGATACTGAGATCAA
NCAGAGCAAATTCACCAATGTTTATGTGAAGAACCTCTCAGAGTCAACAA
CTGA