FC876254

Overview
NameFC876254
Unique NameFC876254
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length462
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1230 contig Ccv1_Contig1230:260..721. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876254 vs. ExPASy Swiss-Prot
Match: RPT3_ARATH (Root phototropism protein 3 OS=Arabidopsis thaliana GN=RPT3 PE=1 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 3.170e-54
Identity = 117/154 (75.97%), Postives = 125/154 (81.17%), Query Frame = 2
Query:   35 VQAKDQRMIIESLISIIPPQKDSVSCSFLLRLLRMANMLKVAPALVTELEKRVGMQFEQATLADLLIPAY-SKGETLYDVDLVQRLLEHFLVQEQTESSSPSRQSFS-DKHMYDASQRGNGT----------SAKMRVARLVDGYLTEVARDRN 460
            +  KDQRMI+ESLISIIPPQKDSV+CSFLLRLLR ANMLKVAPAL+TELEKRVGMQFEQATL DLLIP Y +KGET+YDVDLVQRLLEHFLVQEQTE SSPSR S S  + MY    RGN            +AKMRVARLVD YLTEVARDRN
Sbjct:  367 ISPKDQRMIVESLISIIPPQKDSVTCSFLLRLLRAANMLKVAPALITELEKRVGMQFEQATLQDLLIPGYNNKGETMYDVDLVQRLLEHFLVQEQTEGSSPSRMSPSPSQSMYADIPRGNNNNGGGGGGNNQNAKMRVARLVDSYLTEVARDRN 520          
BLAST of FC876254 vs. ExPASy Swiss-Prot
Match: NPH3_ORYSJ (Coleoptile phototropism protein 1 OS=Oryza sativa subsp. japonica GN=CPT1 PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 1.058e-41
Identity = 100/173 (57.80%), Postives = 118/173 (68.21%), Query Frame = 2
Query:   11 GMKDD---PPTVQAKDQRMIIESLISIIPPQKDSVSCSFLLRLLRMANMLKVAPALVTELEKRVGMQFEQATLADLLIPAYS--KGETLYDVDLVQRLLEHFLVQEQTE---SSSP---------------SRQSFSDKHMYDASQRGNGTSAKMRVARLVDGYLTEVARDRN 460
            G KDD     +  +++QRM++ES+ISI PPQ+DSVSC FLLRLLR+A ML+ APALVTELEKRVGMQ EQA LADLLIP+Y     +T YDVDLVQRL+EHFLVQEQTE   +SSP                R   S      AS    G +AK RVARL+D YL+EV+RDRN
Sbjct:  351 GGKDDVLAACSAPSREQRMVVESIISITPPQRDSVSCGFLLRLLRLAIMLRAAPALVTELEKRVGMQLEQAALADLLIPSYGGRAADTAYDVDLVQRLVEHFLVQEQTEMAVASSPGRGDPPPPPQPEYYSGRMPPSSAAAASASASTGGLNAKARVARLLDSYLSEVSRDRN 523          
BLAST of FC876254 vs. ExPASy Swiss-Prot
Match: Y1044_ARATH (BTB/POZ domain-containing protein At1g30440 OS=Arabidopsis thaliana GN=At1g30440 PE=1 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 2.293e-20
Identity = 59/143 (41.26%), Postives = 88/143 (61.54%), Query Frame = 2
Query:   44 KDQRMIIESLISIIPPQKDSVSCSFLLRLLRMANMLKVAPALVTELEKRVGMQFEQATLADLLIPAYSKG-ETLYDVDLVQRLLEHFLVQEQTES---SSPSRQSFSDKHMYDASQRGNGTSAKMRVARLVDGYLTEVARDRN 460
            ++Q+ ++E +  ++  QK  V   F + +LR+A +LK +P  +  LEKR+GMQ +QA L DL++P++S   ETLYDVD VQR+L+HFL  +Q       SP   S  D ++  + Q     +A   VA+L+DGYL EVA D N
Sbjct:  286 EEQKNLLEEIQELLRMQKGLVPTKFFVDMLRIAKILKASPDCIANLEKRIGMQLDQAALEDLVMPSFSHTMETLYDVDSVQRILDHFLGTDQIMPGGVGSPC-SSVDDGNLIGSPQSITPMTA---VAKLIDGYLAEVAPDVN 424          
BLAST of FC876254 vs. ExPASy Swiss-Prot
Match: Y5880_ARATH (BTB/POZ domain-containing protein At5g48800 OS=Arabidopsis thaliana GN=At5g48800 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 3.099e-17
Identity = 52/144 (36.11%), Postives = 86/144 (59.72%), Query Frame = 2
Query:   32 TVQAKDQRMIIESLISIIPPQKDSVSCSFLLRLLRMANMLKVAPALVTELEKRVGMQFEQATLADLLIPAY-SKGETLYDVDLVQRLLEHFLVQEQTESSSPSRQSFSDKHMYDASQRGNGTSAKMRVARLVDGYLTEVARDRN 460
            T +++ ++ I+E++++++P +   V  SFL  LLR A +L  + +   +LE+R+G Q + ATL DLLIP++   G+TL+D+D V R+L +F  Q+  + S      F     +  SQ     +A  +VA+LVD YL E+A D N
Sbjct:  263 TKRSEHEQTIVETIVTLLPVENLVVPISFLFGLLRRAVILDTSVSCRLDLERRLGSQLDMATLDDLLIPSFRHAGDTLFDIDTVHRILVNF-SQQGGDDSEDEESVFECDSPHSPSQ-----TAMFKVAKLVDSYLAEIAPDAN 400          
BLAST of FC876254 vs. ExPASy Swiss-Prot
Match: RPT2_ARATH (Root phototropism protein 2 OS=Arabidopsis thaliana GN=RPT2 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 3.921e-12
Identity = 45/143 (31.47%), Postives = 74/143 (51.75%), Query Frame = 2
Query:   23 DPPTVQAKDQRMIIESLISIIPPQKDSVSCSFLLRLLRMANMLKVAPALVTELEKRVGMQFEQATLADLLIPAYS-KGETLYDVDLVQRLLEHFLVQEQTESSSPSRQSFSDKHMYDASQRGNGTSAKMRVARLVDGYLTEVA 448
            D  + +   QR +++S++S++P  K     +FL  LLR A  L  +     ELEKR+ +  E  ++ DLLIP+++  GE L D+D V+R++  F+ +E+                     RG  + +  RVA+ VD YL E+A
Sbjct:  249 DNESDERSQQRDLVQSIVSLLPSDKGLFPVNFLCSLLRCAVFLDTSLTCKNELEKRISVVLEHVSVDDLLIPSFTYDGERLLDLDSVRRIISAFVEKEKNVGVFNGGD----------FNRGVCSVSLQRVAKTVDSYLAEIA 381          
The following BLAST results are available for this feature:
BLAST of FC876254 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RPT3_ARATH3.170e-5475.97Root phototropism protein 3 OS=Arabidopsis thalian... [more]
NPH3_ORYSJ1.058e-4157.80Coleoptile phototropism protein 1 OS=Oryza sativa ... [more]
Y1044_ARATH2.293e-2041.26BTB/POZ domain-containing protein At1g30440 OS=Ara... [more]
Y5880_ARATH3.099e-1736.11BTB/POZ domain-containing protein At5g48800 OS=Ara... [more]
RPT2_ARATH3.921e-1231.47Root phototropism protein 2 OS=Arabidopsis thalian... [more]
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Properties
Property NameValue
Genbank descriptionC32002D11EF DevOvary1 Citrus clementina cDNA clone C32002D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876254 ID=FC876254; Name=FC876254; organism=Citrus clementina; type=EST; length=462bp
GATCGTGGCAGGGATGAAGGATGATCCTCCAACCGTTCAGGCTAAAGATC
AACGGATGATAATCGAGAGCCTTATCAGCATAATTCCACCACAGAAAGAC
AGTGTGTCATGTAGCTTCCTTCTTAGGCTCTTGAGAATGGCAAACATGTT
AAAAGTAGCACCTGCTTTGGTGACTGAATTGGAGAAACGAGTGGGGATGC
AGTTTGAGCAAGCTACATTGGCAGATCTTCTCATTCCTGCTTACAGTAAA
GGTGAAACTCTATATGATGTGGATCTTGTTCAGAGGCTTTTGGAGCATTT
TCTTGTTCAGGAGCAGACCGAAAGTTCGAGTCCTAGTAGGCAATCTTTTT
CAGATAAACACATGTATGACGCAAGTCAAAGGGGAAATGGCACAAGTGCT
AAGATGAGAGTGGCAAGGCTTGTTGATGGTTATCTTACAGAAGTGGCCAG
AGATAGAAACCT
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