FC876295

Overview
NameFC876295
Unique NameFC876295
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length361
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10329 contig Ccv1_Contig10329:1..361. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_SYNPX (Carbamoyl-phosphate synthase small chain OS=Synechococcus sp. (strain WH8102) GN=carA PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.483e-22
Identity = 52/120 (43.33%), Postives = 75/120 (62.50%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGKEP 360
            SYAGQ V  T P +GNTGVN DD+E+      G++ R L+   SNWRC+E+L N++    ++GI  VDTRA+ RRLR  G++ GV+S++       L E+  +  + G++L S VS  EP
Sbjct:   51 SYAGQLVTFTYPELGNTGVNGDDQEADHPHARGVIARQLAPCASNWRCSESLDNWMERHGLVGICGVDTRALVRRLRDGGAINGVISSDGRSPADLLAEVRHAPSMEGLNLASQVSTTEP 170          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_TERTT (Carbamoyl-phosphate synthase small chain OS=Teredinibacter turnerae (strain ATCC 39867 / T7901) GN=carA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.232e-21
Identity = 54/120 (45.00%), Postives = 79/120 (65.83%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGKE 357
            SYA Q V +T PHIGNTG N +DEE +  +  GLVIR L +  SN+R +++L  YL+ +NI+GI+D+DTR +TR LR  G+L G +   +   + E LE +R +  + G+DL  +VS K+
Sbjct:   55 SYARQIVTLTYPHIGNTGTNSEDEECKTIWATGLVIRDLPLLASNFRNSQSLDQYLSSKNILGIADIDTRRLTRLLRDKGALAGCIMAGD-VDEAEALETARGFAGLQGMDLAKEVSTKD 173          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_PHOLL (Carbamoyl-phosphate synthase small chain OS=Photorhabdus luminescens subsp. laumondii GN=carA PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 7.988e-21
Identity = 54/120 (45.00%), Postives = 77/120 (64.17%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGKE 357
            SY+ Q V +T PHIGN GVN  D+ES +    GLVIR L + TSN+RC ETL +YL   NI+ I+D+DTR +TR LR+ GS  G +   +    Q  LE ++++  + G+DL  +V+ K+
Sbjct:   47 SYSRQIVTLTYPHIGNVGVNSVDKESLKVQAQGLVIRDLPLLTSNFRCEETLSDYLKRHNIVAIADIDTRKLTRLLREKGSQNGCIIAGKQIDAQVALEKAQAFPGLEGMDLAKEVTTKQ 166          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_HALER (Carbamoyl-phosphate synthase small chain OS=Halomonas eurihalina GN=carA PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.779e-20
Identity = 54/125 (43.20%), Postives = 79/125 (63.20%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVL----STEESKSDQELLEMSRSW-DIVGIDLISDVSGKEP 360
            SY+ Q V +T PHIGNTGVN +D ES     AGLVIR L +  S++RC +++ +YLA++N++GI+D+ TR +TR LR  GS  G +      E   ++   LE +R++  + G+DL   VS  EP
Sbjct:   47 SYSRQIVTLTYPHIGNTGVNSEDVESSSIAAAGLVIRDLPLLASSFRCEQSMSDYLAQQNVLGIADMHTRRLTRLLRDKGSQNGAILAGPDAEGEDAEARALEAARAFPGLKGMDLAKVVSCAEP 171          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_SYNY3 (Carbamoyl-phosphate synthase small chain OS=Synechocystis sp. (strain PCC 6803) GN=carA PE=3 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 3.035e-20
Identity = 49/119 (41.18%), Postives = 76/119 (63.87%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGKE 357
            SY GQ V  T P +GNTGVN +DEES    + G+V R+++   SNWR  ++L +YL E  I+GI  +DTRA+TR+LR  G++ G +STE  + +  L  +  +  + G++L+ +V+  E
Sbjct:   51 SYCGQIVTFTYPELGNTGVNAEDEESIHPHVKGVVARNITRRPSNWRSTQSLPDYLVEHKIIGIYGIDTRALTRKLRSIGAMNGGISTEILEPEALLHHIQAAPSMAGLNLVKEVTTHE 169          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_PSEST (Carbamoyl-phosphate synthase small chain OS=Pseudomonas stutzeri GN=carA PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.762e-20
Identity = 51/120 (42.50%), Postives = 77/120 (64.17%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGKE 357
            SYA Q V +T PH+GNTG    D ES + + AGLVIR L +  SNWR  ++L +YL E + + I+ +DTR +TR LR+ G+  G +      ++++ LE++RS+  + G+DL  +VS KE
Sbjct:   51 SYAKQIVTLTYPHVGNTGTTPQDAESWKVWAAGLVIRDLPLLASNWRNKQSLPDYLKENDTVAIAGIDTRRLTRILREKGAQNGCILAGADATEEKALELARSFPGLKGMDLAKEVSVKE 170          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_PSESM (Carbamoyl-phosphate synthase small chain OS=Pseudomonas syringae pv. tomato GN=carA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.153e-19
Identity = 50/120 (41.67%), Postives = 76/120 (63.33%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGKE 357
            SYA Q V +T PHIGNTG   +D ES + + AGLVIR L +  SNWR   +LG+YL   N++ I+ +DTR +TR LR+ G+  G +   ++ S++  +  +R +  + G+DL  +VS K+
Sbjct:   47 SYAQQIVTLTYPHIGNTGTTPEDAESDRVWSAGLVIRDLPLVASNWRNKMSLGDYLKANNVVAIAGIDTRRLTRILREKGAQNGCIMAGDNISEEAAIAAARGFPGLKGMDLAKEVSTKD 166          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_CORDI (Carbamoyl-phosphate synthase small chain OS=Corynebacterium diphtheriae GN=carA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.506e-19
Identity = 60/124 (48.39%), Postives = 79/124 (63.71%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESR--QCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSL-IGVLSTEESKS-DQELLEMSRSW-DIVGIDLISDVSGKE 357
            SY  Q V+ T P IGNTG N +D ES   + ++AGLVIR LS   SNWR   +L + + E+NI+GIS VDTRAI R LR  GS+  G+ S E +K    EL+E+ +S   + G DL S+VS +E
Sbjct:   51 SYHRQIVVATAPQIGNTGWNDEDGESHGDKIWVAGLVIRDLSTAVSNWRAKRSLEDEMREQNIVGISGVDTRAIVRHLRNFGSVAAGIFSGEAAKQPHDELIEIVKSQPSMAGADLASEVSTQE 174          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_VIBCH (Carbamoyl-phosphate synthase small chain OS=Vibrio cholerae GN=carA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.967e-19
Identity = 51/120 (42.50%), Postives = 75/120 (62.50%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGKE 357
            SY+ Q V +T PHIGNTG N +DEES      GLVIR L +  SN+R  ++L +YL  +NI+GI+D+DTR +TR LR+ G+  G +   ++  +   L  ++ +  + G+DL   VS KE
Sbjct:   47 SYSQQIVTLTYPHIGNTGTNSEDEESTAIHAQGLVIRDLPLIASNFRSEQSLSDYLKSQNIVGIADIDTRKLTRILREKGAQNGCIMAGDNLDEALALAKAKEFPGLKGMDLAKVVSTKE 166          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_VIBPA (Carbamoyl-phosphate synthase small chain OS=Vibrio parahaemolyticus GN=carA PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.356e-19
Identity = 50/120 (41.67%), Postives = 75/120 (62.50%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGKE 357
            SY+ Q V +T PHIGNTG N +DEES      GLVIR L +  SN+R  ++L +YL  +NI+GI+D+DTR +TR LR+ G+  G +    +  +   L  ++ +  + G+DL  +V+ KE
Sbjct:   47 SYSQQIVTLTYPHIGNTGTNSEDEESSSIHAQGLVIRDLPLIASNFRNEQSLSDYLKSQNIVGIADIDTRKLTRILREKGAQNGCIVAGNNLDEALALAKAKEFPGLKGMDLAKEVTTKE 166          
The following BLAST results are available for this feature:
BLAST of FC876295 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 140
Match NameE-valueIdentityDescription
CARA_SYNPX2.483e-2243.33Carbamoyl-phosphate synthase small chain OS=Synech... [more]
CARA_TERTT1.232e-2145.00Carbamoyl-phosphate synthase small chain OS=Teredi... [more]
CARA_PHOLL7.988e-2145.00Carbamoyl-phosphate synthase small chain OS=Photor... [more]
CARA_HALER1.779e-2043.20Carbamoyl-phosphate synthase small chain OS=Halomo... [more]
CARA_SYNY33.035e-2041.18Carbamoyl-phosphate synthase small chain OS=Synech... [more]
CARA_PSEST6.762e-2042.50Carbamoyl-phosphate synthase small chain OS=Pseudo... [more]
CARA_PSESM1.153e-1941.67Carbamoyl-phosphate synthase small chain OS=Pseudo... [more]
CARA_CORDI1.506e-1948.39Carbamoyl-phosphate synthase small chain OS=Coryne... [more]
CARA_VIBCH1.967e-1942.50Carbamoyl-phosphate synthase small chain OS=Vibrio... [more]
CARA_VIBPA3.356e-1941.67Carbamoyl-phosphate synthase small chain OS=Vibrio... [more]

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Properties
Property NameValue
Genbank descriptionC32003A08EF DevOvary1 Citrus clementina cDNA clone C32003A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876295 ID=FC876295; Name=FC876295; organism=Citrus clementina; type=EST; length=361bp
AGTTATGCTGGTCAGTTTGTTCTGATGACAAACCCACATATTGGAAACAC
TGGTGTAAATTTTGATGATGAAGAATCAAGACAGTGCTTCCTTGCTGGTC
TAGTGATAAGAAGTTTAAGTATAGGTACTTCAAACTGGAGATGTGCAGAA
ACACTTGGCAATTATTTAGCAGAAAGGAATATCATGGGAATTTCTGATGT
TGACACACGTGCAATCACCCGAAGGTTAAGGCAAGATGGAAGCCTTATTG
GTGTATTAAGCACTGAGGAATCTAAATCAGATCAGGAACTTCTAGAGATG
TCTCGTTCATGGGACATTGTAGGTATTGATTTAATTAGTGATGTTTCAGG
CAAGGAACCTT
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