FC876299

Overview
NameFC876299
Unique NameFC876299
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length539
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10210 contig Ccv1_Contig10210:9..547. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876299 vs. ExPASy Swiss-Prot
Match: PIP25_ARATH (Probable aquaporin PIP2-5 OS=Arabidopsis thaliana GN=PIP2-5 PE=1 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 7.264e-47
Identity = 92/126 (73.02%), Postives = 97/126 (76.98%), Query Frame = 3
Query:  159 SYSAKDYTDPPPEPLFHAEELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILCIAWGFGGMIFVLVYCTDGISGGHINPAVTIGLFLVRKVSMVRAVMYMVAHCLVAI 536
            S+S KDY DPPPEPLF A EL KWSFYRALIAEFIA            IGYKSQTDPA N D C GVG+L IAW FGGMIF+LVYCT GISGGHINPAVT GL L RKV++VRAVMYMVA CL AI
Sbjct:   11 SFSGKDYQDPPPEPLFDATELGKWSFYRALIAEFIATLLFLYVTIMTVIGYKSQTDPALNPDQCTGVGVLGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLLLARKVTLVRAVMYMVAQCLGAI 136          
BLAST of FC876299 vs. ExPASy Swiss-Prot
Match: PIP22_ORYSJ (Probable aquaporin PIP2-2 OS=Oryza sativa subsp. japonica GN=PIP2-2 PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 9.817e-44
Identity = 90/141 (63.83%), Postives = 100/141 (70.92%), Query Frame = 3
Query:  126 MAKD--TGVVEHGSYSAKDYTDPPPEPLFHAEELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVD--GCAGVGILCIAWGFGGMIFVLVYCTDGISGGHINPAVTIGLFLVRKVSMVRAVMYMVAHCLVAI 536
            MAKD      E G +SAKDYTDPPP PL   EELTKWS YRA+IAEFIA            IGYK Q+D   N     C+GVGIL IAW FGGMIF+LVYCT GISGGHINPAVT GLFL RKVS++RAV+Y++A CL AI
Sbjct:    1 MAKDIEASAPEGGEFSAKDYTDPPPAPLIDVEELTKWSLYRAVIAEFIATLLFLYITVATVIGYKHQSDATVNTTDAACSGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLIRAVLYIIAQCLGAI 141          
BLAST of FC876299 vs. ExPASy Swiss-Prot
Match: PIP23_ORYSJ (Probable aquaporin PIP2-3 OS=Oryza sativa subsp. japonica GN=PIP2-3 PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 1.675e-43
Identity = 90/142 (63.38%), Postives = 100/142 (70.42%), Query Frame = 3
Query:  126 MAKD---TGVVEHGSYSAKDYTDPPPEPLFHAEELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVD--GCAGVGILCIAWGFGGMIFVLVYCTDGISGGHINPAVTIGLFLVRKVSMVRAVMYMVAHCLVAI 536
            MAKD       E G Y AKDY+DPPP PL  AEELTKWS YRA+IAEF+A            IGYK Q+DP  N     C+GVGIL IAW FGGMIF+LVYCT G+SGGHINPAVT GLFL RKVS+VRAV+Y+VA  L AI
Sbjct:    1 MAKDIEAAAAAEGGEYMAKDYSDPPPAPLIDAEELTKWSLYRAVIAEFVATLLFLYITVATVIGYKHQSDPGANAADAACSGVGILGIAWAFGGMIFILVYCTAGVSGGHINPAVTFGLFLARKVSLVRAVLYIVAQSLGAI 142          
BLAST of FC876299 vs. ExPASy Swiss-Prot
Match: PIP24_ARATH (Probable aquaporin PIP2-4 OS=Arabidopsis thaliana GN=PIP2-4 PE=1 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 4.872e-43
Identity = 87/137 (63.50%), Postives = 96/137 (70.07%), Query Frame = 3
Query:  126 MAKDTGVVEHGSYSAKDYTDPPPEPLFHAEELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILCIAWGFGGMIFVLVYCTDGISGGHINPAVTIGLFLVRKVSMVRAVMYMVAHCLVAI 536
            MAKD  V E G  +A+DY DPPP P F  EEL KW  YRA+IAEF+A            IGYK+QTD       C GVGIL IAW FGGMIFVLVYCT GISGGHINPAVT+GLFL RKVS+VR V+Y+VA CL AI
Sbjct:    1 MAKDLDVNESGPPAARDYKDPPPAPFFDMEELRKWPLYRAVIAEFVATLLFLYVSILTVIGYKAQTDATAGGVDCGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTVGLFLARKVSLVRTVLYIVAQCLGAI 137          
BLAST of FC876299 vs. ExPASy Swiss-Prot
Match: PIP23_MAIZE (Aquaporin PIP2-3 OS=Zea mays GN=PIP2-3 PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 4.872e-43
Identity = 87/131 (66.41%), Postives = 97/131 (74.05%), Query Frame = 3
Query:  150 EHGSYSAKDYTDPPPEPLFHAEELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVD--GCAGVGILCIAWGFGGMIFVLVYCTDGISGGHINPAVTIGLFLVRKVSMVRAVMYMVAHCLVAI 536
            E G +SAKDYTDPPP PL  A+ELTKWS YRA+IAEFIA            IGYK QTD A +     C GVGIL IAW FGGMIF+LVYCT GISGGHINPAVT GLFL RKVS+VRA++Y++A CL AI
Sbjct:   12 EAGEFSAKDYTDPPPAPLIDADELTKWSLYRAVIAEFIATLLFLYITVATVIGYKHQTDAAASGPDAACGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRALLYIIAQCLGAI 142          
BLAST of FC876299 vs. ExPASy Swiss-Prot
Match: PIP24_MAIZE (Aquaporin PIP2-4 OS=Zea mays GN=PIP2-4 PE=1 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 8.311e-43
Identity = 90/141 (63.83%), Postives = 101/141 (71.63%), Query Frame = 3
Query:  126 MAKDTGVV--EHGSYSAKDYTDPPPEPLFHAEELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVD--GCAGVGILCIAWGFGGMIFVLVYCTDGISGGHINPAVTIGLFLVRKVSMVRAVMYMVAHCLVAI 536
            MAKD      E G +SAKDYTDPPP PL  AEELT+WS YRA+IAEFIA            IGYK QTD + +     C GVGIL IAW FGGMIF+LVYCT GISGGHINPAVT GLFL RKVS+VRA++Y++A CL AI
Sbjct:    1 MAKDIEASGPEAGEFSAKDYTDPPPAPLIDAEELTQWSLYRAVIAEFIATLLFLYITVATVIGYKHQTDASASGPDAACGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRALLYIIAQCLGAI 141          
BLAST of FC876299 vs. ExPASy Swiss-Prot
Match: PIP23_ARATH (Aquaporin PIP2-3 OS=Arabidopsis thaliana GN=PIP2-3 PE=1 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.200e-41
Identity = 86/137 (62.77%), Postives = 95/137 (69.34%), Query Frame = 3
Query:  126 MAKDTGVVEHGSYSAKDYTDPPPEPLFHAEELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILCIAWGFGGMIFVLVYCTDGISGGHINPAVTIGLFLVRKVSMVRAVMYMVAHCLVAI 536
            MAKD  V     +  +DY DPPP P F AEELTKWS YRA+IAEF+A            IGYK Q+D       C GVGIL IAW FGGMIF+LVYCT GISGGHINPAVT GLFL RKVS++RAV+YMVA CL AI
Sbjct:    1 MAKD--VEGPDGFQTRDYEDPPPTPFFDAEELTKWSLYRAVIAEFVATLLFLYVTVLTVIGYKIQSDTKAGGVDCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLIRAVLYMVAQCLGAI 135          
BLAST of FC876299 vs. ExPASy Swiss-Prot
Match: PIP27_MAIZE (Aquaporin PIP2-7 OS=Zea mays GN=PIP2-7 PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 2.047e-41
Identity = 90/141 (63.83%), Postives = 98/141 (69.50%), Query Frame = 3
Query:  126 MAKDTG-VVEHGSYSAKDYTDPPPEPLFHAEELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDG---CAGVGILCIAWGFGGMIFVLVYCTDGISGGHINPAVTIGLFLVRKVSMVRAVMYMVAHCLVAI 536
            MAKD   V E G YSAKDY DPPP PL   +ELTKWS YRA IAEFIA            IGYK Q+D    + G   C GVGIL IAW FGGMIF+LVYCT GISGGHINPAVT GLFL RKVS+VRA++YM+A C  AI
Sbjct:    1 MAKDVEQVTEQGEYSAKDYHDPPPAPLIDPDELTKWSLYRAAIAEFIATLLFLYITVLTIIGYKRQSDT--KIPGNTECDGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLVRALLYMIAQCAGAI 139          
BLAST of FC876299 vs. ExPASy Swiss-Prot
Match: PIP22_ARATH (Aquaporin PIP2-2 OS=Arabidopsis thaliana GN=PIP2-2 PE=1 SV=2)

HSP 1 Score: 168.318 bits (425), Expect = 2.047e-41
Identity = 85/137 (62.04%), Postives = 95/137 (69.34%), Query Frame = 3
Query:  126 MAKDTGVVEHGSYSAKDYTDPPPEPLFHAEELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILCIAWGFGGMIFVLVYCTDGISGGHINPAVTIGLFLVRKVSMVRAVMYMVAHCLVAI 536
            MAKD    E   +  +DY DPPP P F A+ELTKWS YRA+IAEF+A            IGYK Q+D       C GVGIL IAW FGGMIF+LVYCT GISGGHINPAVT GLFL RKVS++RAV+YMVA CL AI
Sbjct:    1 MAKDVEGPE--GFQTRDYEDPPPTPFFDADELTKWSLYRAVIAEFVATLLFLYITVLTVIGYKIQSDTKAGGVDCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLIRAVLYMVAQCLGAI 135          
BLAST of FC876299 vs. ExPASy Swiss-Prot
Match: PIP25_MAIZE (Aquaporin PIP2-5 OS=Zea mays GN=PIP2-5 PE=1 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 3.492e-41
Identity = 85/139 (61.15%), Postives = 99/139 (71.22%), Query Frame = 3
Query:  126 MAKDTGVVEHGSYSAKDYTDPPPEPLFHAEELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVD--GCAGVGILCIAWGFGGMIFVLVYCTDGISGGHINPAVTIGLFLVRKVSMVRAVMYMVAHCLVAI 536
            MAKD  +    ++  KDY+DPPP PL  AEELTKWS YRA+IAEF+A            IGYK QTD A +     C GVG+L IAW FGGMIF+LVYCT G+SGGHINPAVT GLFL RKVS+VRA++Y+VA CL AI
Sbjct:    1 MAKD--IEAAAAHEGKDYSDPPPAPLVDAEELTKWSLYRAVIAEFVATLLFLYITVATVIGYKHQTDAAASGPDAACGGVGVLGIAWAFGGMIFILVYCTAGVSGGHINPAVTFGLFLARKVSLVRALLYIVAQCLGAI 137          
The following BLAST results are available for this feature:
BLAST of FC876299 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
PIP25_ARATH7.264e-4773.02Probable aquaporin PIP2-5 OS=Arabidopsis thaliana ... [more]
PIP22_ORYSJ9.817e-4463.83Probable aquaporin PIP2-2 OS=Oryza sativa subsp. j... [more]
PIP23_ORYSJ1.675e-4363.38Probable aquaporin PIP2-3 OS=Oryza sativa subsp. j... [more]
PIP24_ARATH4.872e-4363.50Probable aquaporin PIP2-4 OS=Arabidopsis thaliana ... [more]
PIP23_MAIZE4.872e-4366.41Aquaporin PIP2-3 OS=Zea mays GN=PIP2-3 PE=2 SV=1[more]
PIP24_MAIZE8.311e-4363.83Aquaporin PIP2-4 OS=Zea mays GN=PIP2-4 PE=1 SV=1[more]
PIP23_ARATH1.200e-4162.77Aquaporin PIP2-3 OS=Arabidopsis thaliana GN=PIP2-3... [more]
PIP27_MAIZE2.047e-4163.83Aquaporin PIP2-7 OS=Zea mays GN=PIP2-7 PE=2 SV=1[more]
PIP22_ARATH2.047e-4162.04Aquaporin PIP2-2 OS=Arabidopsis thaliana GN=PIP2-2... [more]
PIP25_MAIZE3.492e-4161.15Aquaporin PIP2-5 OS=Zea mays GN=PIP2-5 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC32003B01EF DevOvary1 Citrus clementina cDNA clone C32003B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876299 ID=FC876299; Name=FC876299; organism=Citrus clementina; type=EST; length=539bp
AAAACTAGCAAAAAAAAAGCAAAAGAAAAAGAAAAAGGAAAAGGCTTCTC
TCTCGCTGTGCTTGTGGCTTTGCAGTGCTCTCAGATTTCTCTGTTTCTCT
CCAAATCATTGTTACTGGTTTTCCAATGGCGAAGGACACTGGGGTGGTAG
AGCACGGCTCATATTCAGCCAAGGACTACACGGACCCACCGCCGGAGCCG
CTATTCCACGCCGAGGAGCTGACCAAATGGTCATTCTACAGAGCCTTGAT
AGCTGAGTTCATAGCAACCCTGCTCTTTCTTTACGTCACTGTCTTGACTG
TCATTGGCTACAAAAGCCAGACCGATCCCGCCAAGAACGTCGACGGCTGT
GCCGGCGTCGGCATCCTCTGTATCGCCTGGGGCTTCGGCGGCATGATCTT
TGTCCTCGTTTACTGCACCGACGGTATCTCAGGTGGTCACATTAACCCGG
CAGTGACGATCGGACTATTCTTGGTCCGCAAGGTGTCGATGGTCCGTGCT
GTGATGTACATGGTGGCGCACTGCCTTGTTGCTATCTCC
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