FC876303

Overview
NameFC876303
Unique NameFC876303
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC876303_ssr51 microsatellite FC876303_ssr51:51..64. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9362 contig Ccv1_Contig9362:3..699. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876303 vs. ExPASy Swiss-Prot
Match: CAX1_ARATH (Vacuolar cation/proton exchanger 1 OS=Arabidopsis thaliana GN=CAX1 PE=1 SV=3)

HSP 1 Score: 226.098 bits (575), Expect = 1.397e-58
Identity = 118/191 (61.78%), Postives = 142/191 (74.35%), Query Frame = 3
Query:  138 TEPW-LMENGSVKVLSK----EIRHGRTAHNMSSSSLRKKSDLTLVSKIRFPCLRRCLANIQEVILGTKLSVLFPAIPLAIIGQCFGFAEPWVFALSLLGLTPLAERVSFLTEQIAFYTGPTVGGLLNATCGNATELIIAIFALYERKIDVVKYXXXXXXXXXXXXXXXXXXFCGGIANLRKETKYDRKXA 695
            TEPW + ENG+  + +K    E+R GRTAHNMSSSSLRKKSDL ++ K+ +  L+  L+N+QEVILGTKL++LFPAIP AII    G ++PW+F LSLLGLTPLAERVSFLTEQ+AFYTGPT+GGLLNATCGNATELIIAI AL   K+ VVKY                  FCGGIAN+R+E ++DRK A
Sbjct:    6 TEPWSVAENGNPSITAKGSSRELRLGRTAHNMSSSSLRKKSDLRVIQKVPYKGLKDFLSNLQEVILGTKLAILFPAIPAAIICTYCGVSQPWIFGLSLLGLTPLAERVSFLTEQLAFYTGPTLGGLLNATCGNATELIIAILALTNNKVAVVKYSLLGSILSNLLLVLGTSLFCGGIANIRREQRFDRKQA 196          
BLAST of FC876303 vs. ExPASy Swiss-Prot
Match: CAX3_ARATH (Vacuolar cation/proton exchanger 3 OS=Arabidopsis thaliana GN=CAX3 PE=1 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 5.870e-57
Identity = 117/191 (61.26%), Postives = 138/191 (72.25%), Query Frame = 3
Query:  141 EPW--LMENGSVKVLSK----EIRHGRTAHNMSSSSLRKKSDLTLVSKIRFPCLRRCLANIQEVILGTKLSVLFPAIPLAIIGQCFGFAEPWVFALSLLGLTPLAERVSFLTEQIAFYTGPTVGGLLNATCGNATELIIAIFALYERKIDVVKYXXXXXXXXXXXXXXXXXXFCGGIANLRKETKYDRKXA 695
            EPW  + ENG+  V +K    E+RHGRTAHNMSSSSLRKKSDL LV K+    L+  L+N+QEVILGTKL++LF AIPLAI+   + +  P +F LSL+GLTPLAERVSFLTEQ+AFYTGPTVGGLLNATCGNATELIIAI AL   K+ VVKY                  F GGIAN+R+E ++DRK A
Sbjct:    6 EPWAAIAENGNANVTAKGSSRELRHGRTAHNMSSSSLRKKSDLRLVQKVPCKTLKNILSNLQEVILGTKLTLLFLAIPLAILANSYNYGRPLIFGLSLIGLTPLAERVSFLTEQLAFYTGPTVGGLLNATCGNATELIIAILALANNKVAVVKYSLLGSILSNLLLVLGTSLFFGGIANIRREQRFDRKQA 196          
BLAST of FC876303 vs. ExPASy Swiss-Prot
Match: CAX1A_ORYSJ (Vacuolar cation/proton exchanger 1a OS=Oryza sativa subsp. japonica GN=CAX1a PE=1 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 9.698e-52
Identity = 110/166 (66.27%), Postives = 119/166 (71.69%), Query Frame = 3
Query:  195 HGR--TAHNMSSSSLRKKSDLTLVSKIRFPCLRRCLANIQEVILGTKLSVLFPAIPLAIIGQCFGFAEPWVFALSLLGLTPLAERVSFLTEQIAFYTGPTVGGLLNATCGNATELIIAIFALYERKIDVVKYXXXXXXXXXXXXXXXXXXFCGGIANLRKETKYDR 686
            HGR  TAHNMSSSSLRKKSD  LV K+    LR  LAN+QEV L TKL+VLFPA+PLAI  QCF F + WVFALSLLGL PLAERVSFLTEQIA YTGPTVGGLLNATCGNATELIIA+FAL + KI+VVK                   FCGG+ NL     YDR
Sbjct:   19 HGRSRTAHNMSSSSLRKKSDAALVRKVPVAPLRPLLANLQEVFLATKLAVLFPAVPLAIAAQCFRFDQVWVFALSLLGLIPLAERVSFLTEQIALYTGPTVGGLLNATCGNATELIIALFALLKGKIEVVKCSLLGSVLSNLLLVLGTSLFCGGVVNLGARQPYDR 184          
BLAST of FC876303 vs. ExPASy Swiss-Prot
Match: CAX4_ARATH (Vacuolar cation/proton exchanger 4 OS=Arabidopsis thaliana GN=CAX4 PE=1 SV=2)

HSP 1 Score: 181.415 bits (459), Expect = 3.946e-45
Identity = 99/182 (54.40%), Postives = 127/182 (69.78%), Query Frame = 3
Query:  150 LMENG---SVKVLSKEIRHGRTAHNMSSSSL-RKKSDLTLVSKIRFPCLRRCLANIQEVILGTKLSVLFPAIPLAIIGQCFGFAEPWVFALSLLGLTPLAERVSFLTEQIAFYTGPTVGGLLNATCGNATELIIAIFALYERKIDVVKYXXXXXXXXXXXXXXXXXXFCGGIANLRKETKYD 683
            L+ENG   S K  ++  R  R    +S+SSL RK+SDL L+S++R+  +RR L N+QEV+LGTKL +LFPA+PLA++   +     WVFALSLLGLTPLAER+SFLTEQIAF+TGPTVGGL+NATCGNATE+IIAI A+ +RK+ +VK                   F GGI+NLRK   +D
Sbjct:   14 LLENGGGGSDKPTAETSR--RVRRTVSASSLIRKRSDLKLISRVRWEFMRRILTNLQEVLLGTKLFILFPAVPLAVVAHRYDCPRAWVFALSLLGLTPLAERISFLTEQIAFHTGPTVGGLMNATCGNATEMIIAILAVGQRKMRIVKLSLLGSILSNLLFVLGTSLFLGGISNLRKHQSFD 193          
BLAST of FC876303 vs. ExPASy Swiss-Prot
Match: CAX1B_ORYSJ (Vacuolar cation/proton exchanger 1b OS=Oryza sativa subsp. japonica GN=CAX1b PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.394e-42
Identity = 94/165 (56.97%), Postives = 110/165 (66.67%), Query Frame = 3
Query:  201 RTAHNMSSSSLRKKSDLTLVSKIRFPCLRRCLANIQEVILGTKLSVLFPAIPLAIIGQCFGFAEPWVFALSLLGLTPLAERVSFLTEQIAFYTGPTVGGLLNATCGNATELIIAIFALYERKIDVVKYXXXXXXXXXXXXXXXXXXFCGGIANLRKETKYDRKXA 695
            RTAHN+SSSSLRK SD +L+ K+    LR  LAN+ +V+L T+L +LFPA+ LAI      F + WVF LSL+GL PLAER+SFLTEQIAFYTGPTVGGLLNAT GN TE+IIA+ AL E KI+VVK                   F  GIANLR    YD K A
Sbjct:   31 RTAHNLSSSSLRKSSDASLLHKVPCAALRSLLANLNDVLLTTRLFLLFPAVLLAIAATYLHFGQVWVFVLSLIGLVPLAERLSFLTEQIAFYTGPTVGGLLNATFGNVTEVIIALLALREGKIEVVKCSLLGSILSNLLLVLGTSLFLAGIANLRAHQPYDTKQA 195          
BLAST of FC876303 vs. ExPASy Swiss-Prot
Match: CAX1C_ORYSJ (Vacuolar cation/proton exchanger 1c OS=Oryza sativa subsp. japonica GN=CAX1c PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.989e-30
Identity = 69/144 (47.92%), Postives = 89/144 (61.81%), Query Frame = 3
Query:  276 PCLRRCL----ANIQEVILGTKLSVLFPAIPLAIIGQCFGFAEPWVFALSLLGLTPLAERVSFLTEQIAFYTGPTVGGLLNATCGNATELIIAIFALYERKIDVVKYXXXXXXXXXXXXXXXXXXFCGGIANLRKETKYDRKXA 695
            P LRR L    A +QEV+LGTKL  LF A+PLA+  +       WVFA SL+GL PLAERVSFL+E IA   GPT GG++NATCGN  ELIIA+FAL++ K++++K+                    GGI N+ KE   D++ A
Sbjct:   59 PLLRRLLGGPAAQLQEVLLGTKLYPLFSAVPLAVAAESLRLGRVWVFAFSLIGLAPLAERVSFLSEHIANTVGPTAGGIMNATCGNVPELIIALFALHKNKMEILKWSLLGSILSNLLLVLGSSLLFGGIVNIGKERPLDKRQA 202          
BLAST of FC876303 vs. ExPASy Swiss-Prot
Match: CAX2_ARATH (Vacuolar cation/proton exchanger 2 OS=Arabidopsis thaliana GN=CAX2 PE=1 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 1.117e-23
Identity = 62/134 (46.27%), Postives = 82/134 (61.19%), Query Frame = 3
Query:  294 LANIQEVILGTKLSVLFPAIPLAIIGQCFGFAEPWVFALSLLGLTPLAERVSFLTEQIAFYTGPTVGGLLNATCGNATELIIAIFALYERKIDVVKYXXXXXXXXXXXXXXXXXXFCGGIANLRKETKYDRKXA 695
            L +I+ VI   KL++L P  PLAI+      ++ WVF L+L+G+TPLAER+ + TEQ+A YTGPTVGGLLNAT GN TELII+IFAL    I VV+                   FCGG+   +K+  +D+  A
Sbjct:   65 LNSIKIVIFCNKLNLLLPFGPLAILVHYMIDSKGWVFLLTLVGITPLAERLGYATEQLACYTGPTVGGLLNATFGNVTELIISIFALKNGMIRVVQLTLLGSILSNMLLVLGCAFFCGGLVFYQKDQVFDKGIA 198          
BLAST of FC876303 vs. ExPASy Swiss-Prot
Match: CAX5_ARATH (Vacuolar cation/proton exchanger 5 OS=Arabidopsis thaliana GN=CAX5 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.906e-23
Identity = 62/134 (46.27%), Postives = 80/134 (59.70%), Query Frame = 3
Query:  294 LANIQEVILGTKLSVLFPAIPLAIIGQCFGFAEPWVFALSLLGLTPLAERVSFLTEQIAFYTGPTVGGLLNATCGNATELIIAIFALYERKIDVVKYXXXXXXXXXXXXXXXXXXFCGGIANLRKETKYDRKXA 695
            L + + VIL  KL++L P  PLAI+       + W+F LSL+G+TPLAER+ + TEQ+A YTG TVGGLLNAT GN TELII+IFAL    I VV+                   FCGG+   +KE  +D+  A
Sbjct:   65 LQSFKIVILSNKLNLLLPFGPLAILLHYLTDNKGWIFLLSLVGITPLAERLGYATEQLACYTGSTVGGLLNATFGNVTELIISIFALKSGMIRVVQLTLLGSILSNMLLVLGCAFFCGGLVFSQKEQVFDKGNA 198          
BLAST of FC876303 vs. ExPASy Swiss-Prot
Match: CAX2_ORYSJ (Vacuolar cation/proton exchanger 2 OS=Oryza sativa subsp. japonica GN=CAX2 PE=2 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 2.752e-22
Identity = 57/138 (41.30%), Postives = 83/138 (60.14%), Query Frame = 3
Query:  285 RRCLANIQEVILGTKLSVLFPAIPLAIIGQCFGFA-EPWVFALSLLGLTPLAERVSFLTEQIAFYTGPTVGGLLNATCGNATELIIAIFALYERKIDVVKYXXXXXXXXXXXXXXXXXXFCGGIANLRKETKYDRKXA 695
            RR L +++ VIL  K++VL P  PLA++        + WVF  SL+G+TPLAER+ + TEQ+A YTGPT+GGLLNAT GNATE+II+++AL    I VV+                   F GG+ +  ++  +++  A
Sbjct:   58 RRALTSVRVVILQAKINVLLPFGPLAVMLHYLSANHQGWVFLFSLIGITPLAERLGYATEQLALYTGPTIGGLLNATFGNATEMIISLYALKNGMIRVVQQSLLGSILSNMLLVLGCAFFAGGLVHPSRDQVFNKASA 195          
BLAST of FC876303 vs. ExPASy Swiss-Prot
Match: CAX6_ARATH (Putative vacuolar cation/proton exchanger 6 OS=Arabidopsis thaliana GN=CAX6 PE=3 SV=3)

HSP 1 Score: 100.523 bits (249), Expect = 8.853e-21
Identity = 57/128 (44.53%), Postives = 74/128 (57.81%), Query Frame = 3
Query:  312 VILGTKLSVLFPAIPLAIIGQCFGFAEPWVFALSLLGLTPLAERVSFLTEQIAFYTGPTVGGLLNATCGNATELIIAIFALYERKIDVVKYXXXXXXXXXXXXXXXXXXFCGGIANLRKETKYDRKXA 695
            VIL  KL++L P  PLAI+       + W F LSL+G+TPLAER+ + TEQ++ YTG TVGGLLNAT GN  ELII+I AL    I VV+                   FCGG+    K+  +D++ A
Sbjct:   82 VILSNKLNLLLPFGPLAILVHYLTDNKGWFFLLSLVGITPLAERLGYATEQLSCYTGATVGGLLNATFGNVIELIISIIALKNGMIRVVQLTLLGSILSNILLVLGCAFFCGGLVFPGKDQVFDKRNA 209          
The following BLAST results are available for this feature:
BLAST of FC876303 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
CAX1_ARATH1.397e-5861.78Vacuolar cation/proton exchanger 1 OS=Arabidopsis ... [more]
CAX3_ARATH5.870e-5761.26Vacuolar cation/proton exchanger 3 OS=Arabidopsis ... [more]
CAX1A_ORYSJ9.698e-5266.27Vacuolar cation/proton exchanger 1a OS=Oryza sativ... [more]
CAX4_ARATH3.946e-4554.40Vacuolar cation/proton exchanger 4 OS=Arabidopsis ... [more]
CAX1B_ORYSJ2.394e-4256.97Vacuolar cation/proton exchanger 1b OS=Oryza sativ... [more]
CAX1C_ORYSJ7.989e-3047.92Vacuolar cation/proton exchanger 1c OS=Oryza sativ... [more]
CAX2_ARATH1.117e-2346.27Vacuolar cation/proton exchanger 2 OS=Arabidopsis ... [more]
CAX5_ARATH1.906e-2346.27Vacuolar cation/proton exchanger 5 OS=Arabidopsis ... [more]
CAX2_ORYSJ2.752e-2241.30Vacuolar cation/proton exchanger 2 OS=Oryza sativa... [more]
CAX6_ARATH8.853e-2144.53Putative vacuolar cation/proton exchanger 6 OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionC32003B06EF DevOvary1 Citrus clementina cDNA clone C32003B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876303 ID=FC876303; Name=FC876303; organism=Citrus clementina; type=EST; length=697bp
ACTCCAGACTGAAACAAAATTTTCTCTCTCAATCAATCTTTAATCAAAAA
ATATATATATATATTTTTTATTATTAATTGTTTCTATCCTTCGTGTTTTT
TTTTTCTTTCAATTGCATTTGTGAAAAAATGGCTTCGACTGAACCATGGC
TGATGGAGAATGGCAGCGTGAAGGTTTTGAGCAAGGAGATCAGACATGGA
AGAACTGCACACAACATGTCATCCTCCTCGTTGAGGAAAAAATCCGATCT
TACCCTTGTCTCGAAAATTCGATTCCCTTGTCTTAGACGGTGTCTGGCTA
ATATCCAGGAGGTCATTTTGGGGACTAAACTTTCAGTTCTCTTTCCCGCC
ATTCCTTTAGCCATAATCGGCCAGTGTTTTGGATTTGCAGAACCATGGGT
ATTCGCTCTGAGCTTACTAGGACTGACTCCTCTGGCTGAACGTGTCAGCT
TCTTGACAGAGCAAATTGCTTTCTACACTGGCCCAACAGTGGGGGGATTA
TTGAACGCGACATGCGGCAATGCCACGGAGCTCATCATAGCAATTTTTGC
CCTATACGAACGTAAAATTGACGTGGTCAAATATTCTCTTTTGGGTTCCA
TTCTCTCAAACCTTCTTCTGGTTCTTGGCACTTCGCTCTTCTGTGGAGGG
ATTGCCAATCTCAGAAAGGAAACAAAATACGATAGAAAACNAGCCGA
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