FC876305

Overview
NameFC876305
Unique NameFC876305
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length487
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10260 contig Ccv1_Contig10260:10..496. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876305 vs. ExPASy Swiss-Prot
Match: CHS2_CITSI (Chalcone synthase 2 OS=Citrus sinensis GN=CHS2 PE=2 SV=1)

HSP 1 Score: 287.73 bits (735), Expect = 1.827e-77
Identity = 141/146 (96.58%), Postives = 141/146 (96.58%), Query Frame = 1
Query:   49 MATVQEIRNAQRADGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIVVVEVPKFGKEVATKVIKEWGQPKSKITHLIFCITSGVDMPGAYYQLTK 486
            MATVQEIRNAQRADGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIVVVEVPK GKE ATK IKEWGQPKSKITHLIFC TSGVDMPGA YQLTK
Sbjct:    1 MATVQEIRNAQRADGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTK 146          
BLAST of FC876305 vs. ExPASy Swiss-Prot
Match: CHS3_RUTGR (Chalcone synthase 3 OS=Ruta graveolens GN=CHS3 PE=2 SV=1)

HSP 1 Score: 265.774 bits (678), Expect = 7.434e-71
Identity = 129/144 (89.58%), Postives = 134/144 (93.06%), Query Frame = 1
Query:   55 TVQEIRNAQRADGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIVVVEVPKFGKEVATKVIKEWGQPKSKITHLIFCITSGVDMPGAYYQLTK 486
            TV+EIR AQRADGPATVLAIGTATPA+ V QADYPDYYFRITKSEHMT+LKEKFKRMCDKSMI+KRYM+LTEEILKENPNMCAYMAPSLDARQDIVVVEVPK GKE A K IKEWGQPKSKITHLIFC TSGVDMPG  YQLTK
Sbjct:    5 TVEEIRKAQRADGPATVLAIGTATPANYVTQADYPDYYFRITKSEHMTDLKEKFKRMCDKSMIRKRYMHLTEEILKENPNMCAYMAPSLDARQDIVVVEVPKLGKEAAAKAIKEWGQPKSKITHLIFCTTSGVDMPGCDYQLTK 148          
BLAST of FC876305 vs. ExPASy Swiss-Prot
Match: CHS2_RUTGR (Chalcone synthase 2 OS=Ruta graveolens GN=CHS2 PE=2 SV=1)

HSP 1 Score: 265.774 bits (678), Expect = 7.434e-71
Identity = 129/144 (89.58%), Postives = 133/144 (92.36%), Query Frame = 1
Query:   55 TVQEIRNAQRADGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIVVVEVPKFGKEVATKVIKEWGQPKSKITHLIFCITSGVDMPGAYYQLTK 486
            TV+EIR AQRADGPA VLAIGTATPA+ V QADYPDYYFRITKSEHMTELKEKFKRMCDKSMI+KRYMYLTE+ILKENPNMCAYMAPSLDARQDIVVVEVPK GKE A K IKEWGQPKSKITHLIFC TSGVDMPG  YQLTK
Sbjct:    5 TVEEIRKAQRADGPAAVLAIGTATPANYVTQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIRKRYMYLTEDILKENPNMCAYMAPSLDARQDIVVVEVPKLGKEAAVKAIKEWGQPKSKITHLIFCTTSGVDMPGCDYQLTK 148          
BLAST of FC876305 vs. ExPASy Swiss-Prot
Match: CHSY_BETVE (Chalcone synthase OS=Betula verrucosa GN=CHS PE=2 SV=2)

HSP 1 Score: 263.462 bits (672), Expect = 3.689e-70
Identity = 127/146 (86.99%), Postives = 134/146 (91.78%), Query Frame = 1
Query:   49 MATVQEIRNAQRADGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIVVVEVPKFGKEVATKVIKEWGQPKSKITHLIFCITSGVDMPGAYYQLTK 486
            MA+V+EIR AQRA GPATVLAIGTATP++ + QADYPDYYFRITKS+HMTELKEKFKRMCDKSMIKKRYMYL EEIL ENPNMCAYMAPSLDARQ IVVVEVPK GKE ATK IKEWGQPKSKITHL+FC TSGVDMPGA YQLTK
Sbjct:    1 MASVEEIRKAQRAHGPATVLAIGTATPSNCITQADYPDYYFRITKSDHMTELKEKFKRMCDKSMIKKRYMYLNEEILNENPNMCAYMAPSLDARQTIVVVEVPKLGKEAATKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTK 146          
BLAST of FC876305 vs. ExPASy Swiss-Prot
Match: CHS1_RUTGR (Chalcone synthase 1 OS=Ruta graveolens GN=CHS1 PE=2 SV=1)

HSP 1 Score: 261.536 bits (667), Expect = 1.402e-69
Identity = 127/144 (88.19%), Postives = 132/144 (91.67%), Query Frame = 1
Query:   55 TVQEIRNAQRADGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIVVVEVPKFGKEVATKVIKEWGQPKSKITHLIFCITSGVDMPGAYYQLTK 486
            TV+ IR AQRADGPA VLAIGTATPA+ V QADYPDYYFRITKSEHMTELKEKFKRMCDKSMI+KRYM+LTE+ILKENPNMCAYMAPSLDARQDIVVVEVPK GKE A K IKEWGQPKSKITHLIFC TSGVDMPG  YQLTK
Sbjct:    5 TVEAIRKAQRADGPAAVLAIGTATPANYVTQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIRKRYMHLTEDILKENPNMCAYMAPSLDARQDIVVVEVPKLGKEAAVKAIKEWGQPKSKITHLIFCTTSGVDMPGCDYQLTK 148          
BLAST of FC876305 vs. ExPASy Swiss-Prot
Match: CHS3_SOYBN (Chalcone synthase 3 OS=Glycine max GN=CHS3 PE=3 SV=1)

HSP 1 Score: 260.381 bits (664), Expect = 3.123e-69
Identity = 125/146 (85.62%), Postives = 135/146 (92.47%), Query Frame = 1
Query:   49 MATVQEIRNAQRADGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIVVVEVPKFGKEVATKVIKEWGQPKSKITHLIFCITSGVDMPGAYYQLTK 486
            M +V+EIRNAQRA+GPATV+AIGTATP + V+Q+ YPDYYFRIT SEHMTELKEKFKRMCDKSMIKKRYMYL EEILKENP++CAYMAPSLDARQD+VVVEVPK GKE ATK IKEWGQPKSKITHLIFC TSGVDMPGA YQLTK
Sbjct:    1 MVSVEEIRNAQRAEGPATVMAIGTATPPNCVDQSTYPDYYFRITNSEHMTELKEKFKRMCDKSMIKKRYMYLNEEILKENPSVCAYMAPSLDARQDMVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTK 146          
BLAST of FC876305 vs. ExPASy Swiss-Prot
Match: CHSY_PUELO (Chalcone synthase OS=Pueraria lobata GN=CHS PE=2 SV=1)

HSP 1 Score: 259.225 bits (661), Expect = 6.958e-69
Identity = 125/146 (85.62%), Postives = 133/146 (91.10%), Query Frame = 1
Query:   49 MATVQEIRNAQRADGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIVVVEVPKFGKEVATKVIKEWGQPKSKITHLIFCITSGVDMPGAYYQLTK 486
            M +V EIR AQRA+GPAT+LAIGTA P + V+Q+ YPDYYFRIT SEHMTELKEKF+RMCDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQD+VVVEVPK GKE ATK IKEWGQPKSKITHLIFC TSGVDMPGA YQLTK
Sbjct:    1 MVSVAEIRQAQRAEGPATILAIGTANPPNCVDQSTYPDYYFRITNSEHMTELKEKFQRMCDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDMVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTK 146          
BLAST of FC876305 vs. ExPASy Swiss-Prot
Match: CHS2_CAMSI (Chalcone synthase 2 OS=Camellia sinensis GN=CHS2 PE=2 SV=1)

HSP 1 Score: 258.84 bits (660), Expect = 9.087e-69
Identity = 123/146 (84.25%), Postives = 134/146 (91.78%), Query Frame = 1
Query:   49 MATVQEIRNAQRADGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIVVVEVPKFGKEVATKVIKEWGQPKSKITHLIFCITSGVDMPGAYYQLTK 486
            M TV+E+R AQRA+GPATV+AIGTATP + V+Q+ YPDYYFRIT SEH TELKEKF+RMCDKSMIKKRYMYLTEEILKENPN+CAYMAPSLDARQD+VVVEVPK GKE ATK IKEWGQPKSKITHL+FC TSGVDMPGA YQLTK
Sbjct:    1 MVTVEEVRRAQRAEGPATVMAIGTATPPNCVDQSTYPDYYFRITNSEHKTELKEKFQRMCDKSMIKKRYMYLTEEILKENPNVCAYMAPSLDARQDMVVVEVPKLGKEAATKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTK 146          
BLAST of FC876305 vs. ExPASy Swiss-Prot
Match: CHSY_VITVI (Chalcone synthase OS=Vitis vinifera GN=CHS PE=2 SV=1)

HSP 1 Score: 258.455 bits (659), Expect = 1.187e-68
Identity = 125/146 (85.62%), Postives = 133/146 (91.10%), Query Frame = 1
Query:   49 MATVQEIRNAQRADGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIVVVEVPKFGKEVATKVIKEWGQPKSKITHLIFCITSGVDMPGAYYQLTK 486
            M +V EIR AQRA+GPATVLAIGTATPA+ V QADYPDYYFRIT SEHMTELKEKFKRMC+KSMI KRYM+LTEEILKENPN+CAYMAPSLDARQD+VVVEVPK GKE A K IKEWGQPKSKITHL+FC TSGVDMPGA YQLTK
Sbjct:    1 MVSVAEIRKAQRAEGPATVLAIGTATPANCVYQADYPDYYFRITNSEHMTELKEKFKRMCEKSMINKRYMHLTEEILKENPNVCAYMAPSLDARQDMVVVEVPKLGKEAAAKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTK 146          
BLAST of FC876305 vs. ExPASy Swiss-Prot
Match: CHS1_SOYBN (Chalcone synthase 1 OS=Glycine max GN=CHS1 PE=3 SV=1)

HSP 1 Score: 258.07 bits (658), Expect = 1.550e-68
Identity = 124/146 (84.93%), Postives = 134/146 (91.78%), Query Frame = 1
Query:   49 MATVQEIRNAQRADGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIVVVEVPKFGKEVATKVIKEWGQPKSKITHLIFCITSGVDMPGAYYQLTK 486
            M +V+EIR AQRA+GPATV+AIGTATP + V+Q+ YPDYYFRIT SEHMTELKEKFKRMCDKSMIKKRYMYL EEILKENP++CAYMAPSLDARQD+VVVEVPK GKE ATK IKEWGQPKSKITHLIFC TSGVDMPGA YQLTK
Sbjct:    1 MVSVEEIRKAQRAEGPATVMAIGTATPPNCVDQSTYPDYYFRITNSEHMTELKEKFKRMCDKSMIKKRYMYLNEEILKENPSVCAYMAPSLDARQDMVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTK 146          
The following BLAST results are available for this feature:
BLAST of FC876305 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 142
Match NameE-valueIdentityDescription
CHS2_CITSI1.827e-7796.58Chalcone synthase 2 OS=Citrus sinensis GN=CHS2 PE=... [more]
CHS3_RUTGR7.434e-7189.58Chalcone synthase 3 OS=Ruta graveolens GN=CHS3 PE=... [more]
CHS2_RUTGR7.434e-7189.58Chalcone synthase 2 OS=Ruta graveolens GN=CHS2 PE=... [more]
CHSY_BETVE3.689e-7086.99Chalcone synthase OS=Betula verrucosa GN=CHS PE=2 ... [more]
CHS1_RUTGR1.402e-6988.19Chalcone synthase 1 OS=Ruta graveolens GN=CHS1 PE=... [more]
CHS3_SOYBN3.123e-6985.62Chalcone synthase 3 OS=Glycine max GN=CHS3 PE=3 SV... [more]
CHSY_PUELO6.958e-6985.62Chalcone synthase OS=Pueraria lobata GN=CHS PE=2 S... [more]
CHS2_CAMSI9.087e-6984.25Chalcone synthase 2 OS=Camellia sinensis GN=CHS2 P... [more]
CHSY_VITVI1.187e-6885.62Chalcone synthase OS=Vitis vinifera GN=CHS PE=2 SV... [more]
CHS1_SOYBN1.550e-6884.93Chalcone synthase 1 OS=Glycine max GN=CHS1 PE=3 SV... [more]

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Properties
Property NameValue
Genbank descriptionC32003B08EF DevOvary1 Citrus clementina cDNA clone C32003B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876305 ID=FC876305; Name=FC876305; organism=Citrus clementina; type=EST; length=487bp
CTCACCAAGCACGAGCCACCCACATATTCATTAAGGGTTCAACTTGAAAT
GGCAACCGTTCAAGAGATCAGAAACGCTCAGCGTGCCGACGGTCCGGCCA
CCGTCCTCGCCATCGGTACGGCCACGCCTGCCCACAGTGTCAACCAGGCT
GATTATCCCGACTATTACTTCAGGATCACAAAGAGCGAGCATATGACGGA
GCTTAAAGAGAAGTTCAAGCGCATGTGTGACAAGTCGATGATTAAGAAGC
GTTACATGTACTTAACGGAAGAGATTTTGAAGGAAAACCCCAACATGTGC
GCTTACATGGCTCCATCACTCGACGCACGTCAAGACATTGTGGTGGTCGA
AGTGCCGAAGTTCGGGAAAGAAGTTGCTACAAAGGTCATCAAAGAATGGG
GCCAGCCCAAGTCTAAGATCACCCACCTCATCTTCTGCATCACCTCCGGC
GTCGACATGCCCGGCGCCTACTACCAGCTCACCAAAC
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