FC876318

Overview
NameFC876318
Unique NameFC876318
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length561
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7476 contig Ccv1_Contig7476:190..750. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC876318 vs. ExPASy Swiss-Prot
Match: RSBQ_BACSU (Sigma factor sigB regulation protein rsbQ OS=Bacillus subtilis GN=rsbQ PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 2.763e-31
Identity = 66/148 (44.59%), Postives = 96/148 (64.86%), Query Frame = 2 
Query:  122 LLEALHVRVVGTGDRILVLAHGFGTDQSAWQRILP-YLNHHRVIMFDLVCAGSVNPDYFDFRRYTTLDAYVDDLPNILDTLGVNRCAYVGHSVSAMIGLLASIRRPDLFTKLILIGASPRFLND-EDYHGGFEEAEIDKVFRAMEANY 559
            +L   HV+V G+G   ++ A GFG DQS W  + P +   HRVI+FD V +G  +   +D  RY TLD Y  D+ ++ + L +    +VGHSV A+IG+LASIRRP+LF+ L+++G SP +LND  +Y+GGFEE ++  +   ME NY
Sbjct:    5 ILSRNHVKVKGSGKASIMFAPGFGCDQSVWNAVAPAFEEDHRVILFDYVGSGHSDLRAYDLNRYQTLDGYAQDVLDVCEALDLKETVFVGHSVGALIGMLASIRRPELFSHLVMVGPSPCYLNDPPEYYGGFEEEQLLGLLEMMEKNY 152
The following BLAST results are available for this feature:
BLAST of FC876318 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
RSBQ_BACSU2.763e-3144.59Sigma factor sigB regulation protein rsbQ OS=Bacil... [more]
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Properties
Property NameValue
Genbank descriptionC32003C10EF DevOvary1 Citrus clementina cDNA clone C32003C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876318 ID=FC876318; Name=FC876318; organism=Citrus clementina; type=EST; length=561bp
GCCACACACGTATACCCACGCACCCAACCTTTCCAACATTCATAGATAAA
CAGCAAATAGTGATTTTTCTTTTTTTTAAAAGATTTTTTTGAAGTTTGCT
CTGATAAATCCAATGGGTGACCTGTTAGAAGCCCTCCACGTCCGTGTAGT
AGGTACCGGCGACCGAATTCTGGTACTTGCACATGGATTTGGCACTGACC
AATCCGCTTGGCAGCGCATTCTCCCTTATTTAAACCATCACCGGGTGATC
ATGTTCGATCTTGTTTGCGCCGGCAGTGTCAATCCTGATTATTTCGATTT
CAGGAGGTACACAACTCTTGATGCCTACGTTGACGATTTGCCCAACATTC
TAGACACCCTTGGCGTCAACCGCTGCGCCTACGTTGGCCACTCTGTCTCC
GCCATGATCGGGCTCTTGGCCTCCATTCGCCGCCCTGACCTCTTCACCAA
GCTCATCCTCATCGGTGCTTCTCCAAGGTTCTTGAACGACGAAGATTATC
ACGGGGGATTTGAGGAAGCTGAAATTGACAAAGTGTTTAGGGCCATGGAG
GCGAATTATGA
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