FC876332

Overview
NameFC876332
Unique NameFC876332
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length680
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11876 contig Ccv1_Contig11876:65..744. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876332 vs. ExPASy Swiss-Prot
Match: RD19A_ARATH (Cysteine proteinase RD19a OS=Arabidopsis thaliana GN=RD19A PE=2 SV=1)

HSP 1 Score: 273.478 bits (698), Expect = 7.308e-73
Identity = 134/189 (70.90%), Postives = 151/189 (79.89%), Query Frame = 2
Query:  110 DDVDQLIRQVTDGGDEILSHHESTNNDLLGAEHHFSLFKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSG 676
            D  D +IRQV  G +            +L +E HFSLFK+KF K YAS EEHD RF++FKANLRRA R QKLDPSATHGVTQFSDLT +EFR+ +LG+R   +LPKDA++APILPT +LP DFDWR+ GAV PVK+QGSCGSCWSFS TGALEGANFLATGKLVSLSEQQLVDCDHECDPEE  SCDSG
Sbjct:   27 DGDDLVIRQVVGGAEP----------QVLTSEDHFSLFKRKFGKVYASNEEHDYRFSVFKANLRRARRHQKLDPSATHGVTQFSDLTRSEFRKKHLGVRSGFKLPKDANKAPILPTENLPEDFDWRDHGAVTPVKNQGSCGSCWSFSATGALEGANFLATGKLVSLSEQQLVDCDHECDPEEADSCDSG 205          
BLAST of FC876332 vs. ExPASy Swiss-Prot
Match: A494_ARATH (Probable cysteine proteinase A494 OS=Arabidopsis thaliana GN=At2g21430 PE=2 SV=2)

HSP 1 Score: 268.47 bits (685), Expect = 2.351e-71
Identity = 132/188 (70.21%), Postives = 150/188 (79.79%), Query Frame = 2
Query:  113 DVDQLIRQVTDGGDEILSHHESTNNDLLGAEHHFSLFKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSG 676
            D D LIRQV D           T   +L +E HF+LFKKKF K Y S EEH  RF++FKANL RA R QK+DPSA HGVTQFSDLT +EFRR +LG++   +LPKDA+QAPILPT +LP +FDWR++GAV PVK+QGSCGSCWSFSTTGALEGA+FLATGKLVSLSEQQLVDCDHECDPEE GSCDSG
Sbjct:   25 DEDVLIRQVVD----------ETEPKVLSSEDHFTLFKKKFGKVYGSIEEHYYRFSVFKANLLRAMRHQKMDPSARHGVTQFSDLTRSEFRRKHLGVKGGFKLPKDANQAPILPTQNLPEEFDWRDRGAVTPVKNQGSCGSCWSFSTTGALEGAHFLATGKLVSLSEQQLVDCDHECDPEEEGSCDSG 202          
BLAST of FC876332 vs. ExPASy Swiss-Prot
Match: CYSP_PEA (Cysteine proteinase 15A OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 260.381 bits (664), Expect = 6.402e-69
Identity = 124/186 (66.67%), Postives = 149/186 (80.11%), Query Frame = 2
Query:  119 DQLIRQVTDGGDEILSHHESTNNDLLGAEHHFSLFKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSG 676
            D +IRQV D  ++           LL AEHHF+ FK KF+K+YA++EEHD RF +FK+NL +A   Q  DP+A HG+T+FSDLT +EFRR +LGL+++LRLP  A +APILPT +LP DFDWREKGAV PVKDQGSCGSCW+FSTTGALEGA++LATGKLVSLSEQQLVDCDH CDPE+ GSCDSG
Sbjct:   27 DFIIRQVVDNEED----------HLLNAEHHFTSFKSKFSKSYATKEEHDYRFGVFKSNLIKAKLHQNRDPTAEHGITKFSDLTASEFRRQFLGLKKRLRLPAHAQKAPILPTTNLPEDFDWREKGAVTPVKDQGSCGSCWAFSTTGALEGAHYLATGKLVSLSEQQLVDCDHVCDPEQAGSCDSG 202          
BLAST of FC876332 vs. ExPASy Swiss-Prot
Match: CYSP1_MAIZE (Cysteine proteinase 1 OS=Zea mays GN=CCP1 PE=2 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 1.632e-64
Identity = 125/196 (63.78%), Postives = 144/196 (73.47%), Query Frame = 2
Query:  107 IDDVDQLIRQVTDGGDEILSHHESTNNDL-LGAEHHFSLFKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATHGVTQFSDLTPAEFRRTYLGLRRKLR-----LPKDADQAPILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSG 676
            +D  D LIRQV  GGD+         NDL L AE HF  F ++F K+Y   +EH  R ++FK NLRRA R Q LDPSA HGVT+FSDLTPAEFRRTYLGLR+  R     L + A +AP+LPT+ LP DFDWR+ GAVGPVK+QGSCGSCWSFS +GALEGA++LATGKL  LSEQQ VDCDHECD  EP SCDSG
Sbjct:   21 VDAEDPLIRQVVPGGDD---------NDLELNAESHFLSFVQRFGKSYKDADEHAYRLSVFKDNLRRARRHQLLDPSAEHGVTKFSDLTPAEFRRTYLGLRKSRRALLRELGESAHEAPVLPTDGLPDDFDWRDHGAVGPVKNQGSCGSCWSFSASGALEGAHYLATGKLEVLSEQQFVDCDHECDSSEPDSCDSG 207          
BLAST of FC876332 vs. ExPASy Swiss-Prot
Match: CYSP1_DICDI (Cysteine proteinase 1 OS=Dictyostelium discoideum GN=cprA PE=1 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 1.821e-31
Identity = 81/171 (47.37%), Postives = 101/171 (59.06%), Query Frame = 2
Query:  194 LGAEHHFSLFKKKFNKAYASQEEHDRRFTIFKANLRRA------ARRQKLDPSATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPT---NDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHEC-DPEEPGSCDSG 676
            L  +  F  F+ KFNK Y S EE+  RF IFK+NL +       A   K D     GV +F+DL+  EF+  YL  +  +    D   A  L     N +P  FDWR +GAV PVK+QG CGSCWSFSTTG +EG +F++  KLVSLSEQ LVDCDHEC + E   +CD G
Sbjct:   23 LEEQSQFLEFQDKFNKKY-SHEEYLERFEIFKSNLGKIEELNLIAINHKADTK--FGVNKFADLSSDEFKNYYLNNKEAI-FTDDLPVADYLDDEFINSIPTAFDWRTRGAVTPVKNQGQCGSCWSFSTTGNVEGQHFISQNKLVSLSEQNLVDCDHECMEYEGEQACDEG 189          
BLAST of FC876332 vs. ExPASy Swiss-Prot
Match: CYSP2_DICDI (Cysteine proteinase 2 OS=Dictyostelium discoideum GN=cprB PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 9.037e-31
Identity = 75/160 (46.88%), Postives = 93/160 (58.13%), Query Frame = 2
Query:  212 FSLFKKKFNKAYASQEEHDRRFTIFKANLRRAAR-RQKLDPSATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTNDL---PADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGM 679
            F+ +  KFN+ Y+S E    R++IFK+N+        K D     G+  F+D+T  E+R+TYLG R         D   +L   DL   P   DWR K AV P+KDQG CGSCWSFSTTG+ EGA+ L T KLVSLSEQ LVDC     PEE   CD G+
Sbjct:   36 FTEWTLKFNRQYSSSE-FSNRYSIFKSNMDYVDNWNSKGDSQTVLGLNNFADITNEEYRKTYLGTRVNAHSYNGYDGREVLNVEDLQTNPKSIDWRTKNAVTPIKDQGQCGSCWSFSTTGSTEGAHALKTKKLVSLSEQNLVDCS---GPEENFGCDGGL 191          
BLAST of FC876332 vs. ExPASy Swiss-Prot
Match: GCP1_ARATH (Germination-specific cysteine protease 1 OS=Arabidopsis thaliana GN=GCP1 PE=2 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 1.305e-29
Identity = 66/133 (49.62%), Postives = 92/133 (69.17%), Query Frame = 2
Query:  260 EHDRRFTIFKANLRRAARRQKLDPSATH--GVTQFSDLTPAEFRRTYLGLR----RKLRLPKDADQAPILPTN--DLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCD 634
            + D+RF IFK NLR      + + +AT+  G+T+F+DLT  E+R+ YLG R    R++   K+ +Q      N  ++P   DWR+KGAV P+KDQG+CGSCW+FSTT A+EG N + TG+L+SLSEQ+LVDCD
Sbjct:   69 DQDKRFNIFKDNLRFIDLHNEDNKNATYKLGLTKFTDLTNDEYRKLYLGARTEPARRIAKAKNVNQKYSAAVNGKEVPETVDWRQKGAVNPIKDQGTCGSCWAFSTTAAVEGINKIVTGELISLSEQELVDCD 201          
BLAST of FC876332 vs. ExPASy Swiss-Prot
Match: ALEU_ARATH (Thiol protease aleurain OS=Arabidopsis thaliana GN=ALEU PE=1 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 1.305e-29
Identity = 80/176 (45.45%), Postives = 96/176 (54.55%), Query Frame = 2
Query:  113 DVDQLIRQVTDGGDEILSHHESTNNDLLGAEHH---FSLFKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDC 631
            D    IR V+DG  E+    E + + +LG   H   F+ F  ++ K Y + EE   RF+IFK NL       K   S   GV QF+DLT  EF+RT LG  +             +    LP   DWRE G V PVKDQG CGSCW+FSTTGALE A   A GK +SLSEQQLVDC
Sbjct:   27 DESNPIRMVSDGLREV----EESVSQILGQSRHVLSFARFTHRYGKKYQNVEEMKLRFSIFKENLDLIRSTNKKGLSYKLGVNQFADLTWQEFQRTKLGAAQNCSATLKGSHK--VTEAALPETKDWREDGIVSPVKDQGGCGSCWTFSTTGALEAAYHQAFGKGISLSEQQLVDC 196          
BLAST of FC876332 vs. ExPASy Swiss-Prot
Match: ORYA_ORYSJ (Oryzain alpha chain OS=Oryza sativa subsp. japonica GN=Os04g0650000 PE=1 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 8.458e-29
Identity = 68/164 (41.46%), Postives = 95/164 (57.93%), Query Frame = 2
Query:  158 ILSHHESTNNDLLGAEHHFSLFKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATH----GVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTND-LPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCD 634
            I+S+ E +  +   A   ++ +K +  K+Y +  E +RR+  F+ NLR          +  H    G+ +F+DLT  E+R TYLGLR K R  +      +   N+ LP   DWR KGAV  +KDQG CGSCW+FS   A+EG N + TG L+SLSEQ+LVDCD
Sbjct:   25 IVSYGERSEEE---ARRLYAEWKAEHGKSYNAVGEEERRYAAFRDNLRYIDEHNAAADAGVHSFRLGLNRFADLTNEEYRDTYLGLRNKPRRERKVSDRYLAADNEALPESVDWRTKGAVAEIKDQGGCGSCWAFSAIAAVEGINQIVTGDLISLSEQELVDCD 185          
BLAST of FC876332 vs. ExPASy Swiss-Prot
Match: XCP1_ARATH (Xylem cysteine proteinase 1 OS=Arabidopsis thaliana GN=XCP1 PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.884e-28
Identity = 67/143 (46.85%), Postives = 84/143 (58.74%), Query Frame = 2
Query:  212 FSLFKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPIL--PTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCD 634
            F  +  + +KAY S EE   RF +F+ NL    +R     S   G+ +F+DLT  EF+  YLGL +     K    A        DLP   DWR+KGAV PVKDQG CGSCW+FST  A+EG N + TG L SLSEQ+L+DCD
Sbjct:   51 FESWMSEHSKAYKSVEEKVHRFEVFRENLMHIDQRNNEINSYWLGLNEFADLTHEEFKGRYLGLAKPQFSRKRQPSANFRYRDITDLPKSVDWRKKGAVAPVKDQGQCGSCWAFSTVAAVEGINQITTGNLSSLSEQELIDCD 193          
The following BLAST results are available for this feature:
BLAST of FC876332 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
RD19A_ARATH7.308e-7370.90Cysteine proteinase RD19a OS=Arabidopsis thaliana ... [more]
A494_ARATH2.351e-7170.21Probable cysteine proteinase A494 OS=Arabidopsis t... [more]
CYSP_PEA6.402e-6966.67Cysteine proteinase 15A OS=Pisum sativum PE=2 SV=1[more]
CYSP1_MAIZE1.632e-6463.78Cysteine proteinase 1 OS=Zea mays GN=CCP1 PE=2 SV=... [more]
CYSP1_DICDI1.821e-3147.37Cysteine proteinase 1 OS=Dictyostelium discoideum ... [more]
CYSP2_DICDI9.037e-3146.88Cysteine proteinase 2 OS=Dictyostelium discoideum ... [more]
GCP1_ARATH1.305e-2949.62Germination-specific cysteine protease 1 OS=Arabid... [more]
ALEU_ARATH1.305e-2945.45Thiol protease aleurain OS=Arabidopsis thaliana GN... [more]
ORYA_ORYSJ8.458e-2941.46Oryzain alpha chain OS=Oryza sativa subsp. japonic... [more]
XCP1_ARATH1.884e-2846.85Xylem cysteine proteinase 1 OS=Arabidopsis thalian... [more]

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Properties
Property NameValue
Genbank descriptionC32003E03EF DevOvary1 Citrus clementina cDNA clone C32003E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876332 ID=FC876332; Name=FC876332; organism=Citrus clementina; type=EST; length=680bp
GACGCTTCTATTGATATCAGCATTGTCTAAAAACATGGGATCTAAAACAG
TAGTTTTCTTTCTGGTCTCTCTCGTCGTCGTCTCCGCCGTTTCATCAGGG
ACGTTGATCGACGATGTTGATCAGCTGATCAGGCAAGTAACGGACGGCGG
TGACGAGATCCTAAGCCACCACGAGAGCACCAACAACGACCTCTTGGGCG
CAGAGCACCACTTCTCCCTATTCAAGAAGAAGTTCAATAAAGCGTACGCT
TCGCAGGAGGAGCACGACCGTAGGTTCACTATTTTCAAGGCCAACTTGCG
ACGCGCCGCGCGTCGCCAGAAGCTCGACCCGAGCGCCACCCACGGCGTCA
CTCAGTTCTCCGACTTGACTCCGGCCGAGTTCCGCCGGACGTACCTTGGC
CTCAGGAGGAAGCTGAGGCTGCCTAAGGATGCGGATCAGGCGCCGATCTT
GCCTACGAATGATTTGCCGGCGGATTTTGATTGGAGAGAGAAGGGCGCTG
TAGGCCCTGTTAAAGATCAGGGTTCATGCGGATCATGCTGGAGTTTCAGT
ACAACAGGGGCCTTGGAAGGTGCTAACTTCCTGGCAACTGGAAAGCTTGT
GAGCCTCAGTGAGCAACAGCTTGTGGATTGCGATCATGAGTGTGATCCTG
AGGAACCAGGTTCTTGTGATTCTGGGATGC
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