FC876357

Overview
NameFC876357
Unique NameFC876357
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length633
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10337 contig Ccv1_Contig10337:1..633. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876357 vs. ExPASy Swiss-Prot
Match: RPE1_ORYSJ (Ribulose-phosphate 3-epimerase, cytoplasmic isoform OS=Oryza sativa subsp. japonica GN=Os09g0505700 PE=1 SV=1)

HSP 1 Score: 292.352 bits (747), Expect = 1.324e-78
Identity = 137/161 (85.09%), Postives = 152/161 (94.41%), Query Frame = 2
Query:  149 AKIAPSMLSSDFANLASEAERILNCGADWLHMDIMDGHFVPNLTIGAPVIESLRKHTKAYLDCHLMVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRTL 631
            AKIAPSMLSSDFANLA+EA+R++  GADWLHMDIMDGHFVPNLTIGAPVI+SLRKHTKAYLDCHLMVTNP DYVEPL KAGASGFTFH+E+S+DNWQEL+Q IK+KGMRPGV+L+PGT VEEV+PLVE  NPVE+VLVMTVEPGFGGQKFMPEMM+KVR L
Sbjct:    7 AKIAPSMLSSDFANLAAEADRMVRLGADWLHMDIMDGHFVPNLTIGAPVIQSLRKHTKAYLDCHLMVTNPSDYVEPLAKAGASGFTFHIEVSRDNWQELIQSIKAKGMRPGVSLRPGTPVEEVFPLVEAENPVELVLVMTVEPGFGGQKFMPEMMEKVRAL 167          
BLAST of FC876357 vs. ExPASy Swiss-Prot
Match: RPE_YEAST (Ribulose-phosphate 3-epimerase OS=Saccharomyces cerevisiae GN=RPE1 PE=1 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.133e-44
Identity = 91/172 (52.91%), Postives = 118/172 (68.60%), Query Frame = 2
Query:  155 IAPSMLSSDFANLASEAERILNCGADWLHMDIMDGHFVPNLTIGAPVIESLR-------------KHTKAYLDCHLMVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRTL 631
            IAPS+L+SDFANL  E  +++N GADWLH+D+MDGHFVPN+T+G P++ SLR             K   A+ DCH+MV NP  +V+   K GA  FTFH E ++D    LV+ IKSKG++   A+KPGTSV+ ++ L   A  ++M LVMTVEPGFGGQKFM +MM KV TL
Sbjct:    6 IAPSILASDFANLGCECHKVINAGADWLHIDVMDGHFVPNITLGQPIVTSLRRSVPRPGDASNTEKKPTAFFDCHMMVENPEKWVDDFAKCGADQFTFHYEATQDP-LHLVKLIKSKGIKAACAIKPGTSVDVLFEL---APHLDMALVMTVEPGFGGQKFMEDMMPKVETL 173          
BLAST of FC876357 vs. ExPASy Swiss-Prot
Match: RPE_HUMAN (Ribulose-phosphate 3-epimerase OS=Homo sapiens GN=RPE PE=1 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 5.255e-43
Identity = 89/167 (53.29%), Postives = 120/167 (71.86%), Query Frame = 2
Query:  137 MGVTAKIAPSMLSSDFANLASEAERILNCGADWLHMDIMDGHFVPNLTIGAPVIESLRKH--TKAYLDCHLMVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRTL 631
            M    KI PS+L+SD ANL +E  R+L+ GAD+LH+D+MDGHFVPN+T G PV+ESLRK      + D H+MV+ P  +V+P+  AGA+ +TFH+E + +N   L++ I+  GM+ G+A+KPGTSVE + P    AN ++M LVMTVEPGFGGQKFM +MM KV  L
Sbjct:    1 MASGCKIGPSILNSDLANLGAECLRMLDSGADYLHLDVMDGHFVPNITFGHPVVESLRKQLGQDPFFDMHMMVSKPEQWVKPMAVAGANQYTFHLE-ATENPGALIKDIRENGMKVGLAIKPGTSVEYLAP---WANQIDMALVMTVEPGFGGQKFMEDMMPKVHWL 163          
BLAST of FC876357 vs. ExPASy Swiss-Prot
Match: RPE_MOUSE (Ribulose-phosphate 3-epimerase OS=Mus musculus GN=Rpe PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.171e-42
Identity = 88/167 (52.69%), Postives = 120/167 (71.86%), Query Frame = 2
Query:  137 MGVTAKIAPSMLSSDFANLASEAERILNCGADWLHMDIMDGHFVPNLTIGAPVIESLRKH--TKAYLDCHLMVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRTL 631
            M    KI PS+L+SD ANL +E  R+L+ GAD+LH+D+MDGHFVPN+T G PV+ESLRK      + D H+MV+ P  +V+P+  AGA+ +TFH+E + +N   L++ I+  GM+ G+A+KPGT+VE + P    AN ++M LVMTVEPGFGGQKFM +MM KV  L
Sbjct:    1 MASGCKIGPSILNSDLANLGAECLRMLDSGADYLHLDVMDGHFVPNITFGHPVVESLRKQLGQDPFFDMHMMVSRPEQWVKPMAVAGANQYTFHLE-ATENPGALIKDIRENGMKVGLAIKPGTTVEYLAP---WANQIDMALVMTVEPGFGGQKFMEDMMPKVHWL 163          
BLAST of FC876357 vs. ExPASy Swiss-Prot
Match: RPE_PONAB (Ribulose-phosphate 3-epimerase OS=Pongo abelii GN=RPE PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 1.997e-42
Identity = 88/167 (52.69%), Postives = 119/167 (71.26%), Query Frame = 2
Query:  137 MGVTAKIAPSMLSSDFANLASEAERILNCGADWLHMDIMDGHFVPNLTIGAPVIESLRKH--TKAYLDCHLMVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRTL 631
            M    KI PS+L+SD ANL +E  R+L+ GAD+LH+D+MDGHFVPN+T G PV+ESLRK      + D H+MV+ P  +V+P+  AGA+ + FH+E + +N   L++ I+  GM+ G+A+KPGTSVE + P    AN ++M LVMTVEPGFGGQKFM +MM KV  L
Sbjct:    1 MASGCKIGPSILNSDLANLGAECLRMLDSGADYLHLDVMDGHFVPNITFGHPVVESLRKQLGQDPFFDMHMMVSKPEQWVKPMAVAGANQYAFHLE-ATENPGALIKDIRENGMKVGLAIKPGTSVEYLAP---WANQIDMALVMTVEPGFGGQKFMEDMMPKVHWL 163          
BLAST of FC876357 vs. ExPASy Swiss-Prot
Match: RPE_ASHGO (Ribulose-phosphate 3-epimerase OS=Ashbya gossypii GN=RPE1 PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 2.608e-42
Identity = 89/170 (52.35%), Postives = 117/170 (68.82%), Query Frame = 2
Query:  155 IAPSMLSSDFANLASEAERILNCGADWLHMDIMDGHFVPNLTIGAPVIESLRK-----------HTKAYLDCHLMVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRTL 631
            IAPS+L+SDFANL     R++N GA+WLH+D+MDGHFVPN+T+G P+++SLRK             KA+ DCH+MV  P  +V+   + GA  FTFH E +K N  ELV+ IKS+G+R   A+KP T V+ ++ L   A  ++M LVMTVEPGFGGQKFMP+MM KV  L
Sbjct:    6 IAPSILASDFANLECGCHRVINAGAEWLHIDVMDGHFVPNITLGPPIVKSLRKAVPRVGDKESDKPKAFFDCHMMVAEPEKWVDVFVENGADQFTFHYEATK-NPLELVKLIKSRGIRAACAIKPDTPVDVLFEL---APYLDMALVMTVEPGFGGQKFMPDMMPKVAAL 171          
BLAST of FC876357 vs. ExPASy Swiss-Prot
Match: RPE_CANGA (Ribulose-phosphate 3-epimerase OS=Candida glabrata GN=RPE1 PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 4.448e-42
Identity = 88/175 (50.29%), Postives = 114/175 (65.14%), Query Frame = 2
Query:  155 IAPSMLSSDFANLASEAERILNCGADWLHMDIMDGHFVPNLTIGAPVIESLRK----------------HTKAYLDCHLMVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRTL 631
            IAPS+L+SDFANL  E  R++N GA+WLH+D+MDGHFVPN+T+G P++ SLR+                   A+ DCH+MV  P  +V    KAGA  FTFH E +KD    LV+ IK  G++   A+KPGT V+ ++ L   A  ++M LVMTVEPGFGGQKFMP+MM KV  L
Sbjct:    6 IAPSILASDFANLGCECHRVINSGAEWLHIDVMDGHFVPNITLGQPIVTSLRRAVPRSQEEEKASGEVARPTAFFDCHMMVEEPEKWVADFAKAGADQFTFHYEATKDP-LSLVKLIKENGIKAACAIKPGTPVDVLFEL---APYLDMALVMTVEPGFGGQKFMPDMMPKVEAL 176          
BLAST of FC876357 vs. ExPASy Swiss-Prot
Match: RPE_SCHPO (Ribulose-phosphate 3-epimerase OS=Schizosaccharomyces pombe GN=SPAC31G5.05c PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.690e-41
Identity = 89/166 (53.61%), Postives = 113/166 (68.07%), Query Frame = 2
Query:  143 VTAKIAPSMLSSDFANLASEAERILNCGADWLHMDIMDGHFVPNLTIGAPVIESLRKH---TKAYLDCHLMVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRTL 631
            V AKIAPS+L+ DFANL  E  R+L  G+DWLH+D+MD  FVPNLTIG  V++++R H    +A+ DCHLMV  P  Y++ L  AGAS F FH E ++ + +E++ R   KGM  G ALKP T VE + P VE    ++MVLVMTVEPG GGQ FMPE + KV  L
Sbjct:    2 VQAKIAPSLLAGDFANLEKEVGRMLKYGSDWLHVDVMDAQFVPNLTIGPIVVKAMRNHYTKEEAFFDCHLMVIEPERYIDQLADAGASLFCFHYEATEKH-EEIISRAHEKGMLVGCALKPKTPVEVILPFVE---KLDMVLVMTVEPGKGGQSFMPECLPKVEFL 163          
BLAST of FC876357 vs. ExPASy Swiss-Prot
Match: RPE_MYCTU (Ribulose-phosphate 3-epimerase OS=Mycobacterium tuberculosis GN=rpe PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.134e-37
Identity = 80/159 (50.31%), Postives = 111/159 (69.81%), Query Frame = 2
Query:  155 IAPSMLSSDFANLASEAERILNCGADWLHMDIMDGHFVPNLTIGAPVIESLRKHTKAYLDCHLMVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRTL 631
            IAPS+L++DFA LA EA  +   GADWLH+D+MDGHFVPNLTIG PV+ESL   T   +DCHLM+ NP  +  P  +AGA   TFH E + DN   + + I++ G + G+++KPGT +E   P ++     + +LVM+VEPGFGGQ+F+PE++ KVR +
Sbjct:   10 IAPSILAADFARLADEAAAVN--GADWLHVDVMDGHFVPNLTIGLPVVESLLAVTDIPMDCHLMIDNPDRWAPPYAEAGAYNVTFHAE-ATDNPVGVARDIRAAGAKAGISVKPGTPLE---PYLDILPHFDTLLVMSVEPGFGGQRFIPEVLSKVRAV 162          
BLAST of FC876357 vs. ExPASy Swiss-Prot
Match: RPE_MYCBO (Ribulose-phosphate 3-epimerase OS=Mycobacterium bovis GN=rpe PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.134e-37
Identity = 80/159 (50.31%), Postives = 111/159 (69.81%), Query Frame = 2
Query:  155 IAPSMLSSDFANLASEAERILNCGADWLHMDIMDGHFVPNLTIGAPVIESLRKHTKAYLDCHLMVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRTL 631
            IAPS+L++DFA LA EA  +   GADWLH+D+MDGHFVPNLTIG PV+ESL   T   +DCHLM+ NP  +  P  +AGA   TFH E + DN   + + I++ G + G+++KPGT +E   P ++     + +LVM+VEPGFGGQ+F+PE++ KVR +
Sbjct:   10 IAPSILAADFARLADEAAAVN--GADWLHVDVMDGHFVPNLTIGLPVVESLLAVTDIPMDCHLMIDNPDRWAPPYAEAGAYNVTFHAE-ATDNPVGVARDIRAAGAKAGISVKPGTPLE---PYLDILPHFDTLLVMSVEPGFGGQRFIPEVLSKVRAV 162          
The following BLAST results are available for this feature:
BLAST of FC876357 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
RPE1_ORYSJ1.324e-7885.09Ribulose-phosphate 3-epimerase, cytoplasmic isofor... [more]
RPE_YEAST2.133e-4452.91Ribulose-phosphate 3-epimerase OS=Saccharomyces ce... [more]
RPE_HUMAN5.255e-4353.29Ribulose-phosphate 3-epimerase OS=Homo sapiens GN=... [more]
RPE_MOUSE1.171e-4252.69Ribulose-phosphate 3-epimerase OS=Mus musculus GN=... [more]
RPE_PONAB1.997e-4252.69Ribulose-phosphate 3-epimerase OS=Pongo abelii GN=... [more]
RPE_ASHGO2.608e-4252.35Ribulose-phosphate 3-epimerase OS=Ashbya gossypii ... [more]
RPE_CANGA4.448e-4250.29Ribulose-phosphate 3-epimerase OS=Candida glabrata... [more]
RPE_SCHPO1.690e-4153.61Ribulose-phosphate 3-epimerase OS=Schizosaccharomy... [more]
RPE_MYCTU1.134e-3750.31Ribulose-phosphate 3-epimerase OS=Mycobacterium tu... [more]
RPE_MYCBO1.134e-3750.31Ribulose-phosphate 3-epimerase OS=Mycobacterium bo... [more]

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Properties
Property NameValue
Genbank descriptionC32003G11EF DevOvary1 Citrus clementina cDNA clone C32003G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876357 ID=FC876357; Name=FC876357; organism=Citrus clementina; type=EST; length=633bp
GATTTTAGCTTGCAACAAAAAAAAAAGAATCTTCTTGTCTCTCCGATTTC
TCTTCTCCGACAAAAAGAGTCCAAACCCGTGCGCATCTGAATCGGGTCGC
GTCGTGTCGTAAATCCAACCAAAACAAAAAAAAAAAATGGGCGTAACGGC
AAAAATAGCACCGTCAATGTTGTCGTCGGACTTCGCCAACTTAGCATCCG
AGGCCGAGCGCATACTCAACTGTGGGGCCGATTGGCTTCACATGGACATC
ATGGATGGGCACTTTGTTCCAAATCTAACTATTGGTGCTCCAGTGATTGA
AAGTTTGAGAAAGCATACAAAGGCATATCTTGATTGTCACCTAATGGTAA
CAAATCCTCTTGATTATGTTGAACCTCTGGGTAAAGCAGGTGCTTCAGGT
TTTACCTTTCATGTGGAGATATCCAAAGATAACTGGCAAGAACTTGTCCA
AAGAATTAAGTCTAAGGGCATGAGGCCTGGTGTGGCATTGAAGCCTGGTA
CATCCGTTGAAGAAGTTTATCCCCTGGTTGAAGGTGCAAATCCTGTGGAA
ATGGTTCTTGTAATGACTGTAGAACCTGGATTTGGTGGTCAAAAGTTCAT
GCCAGAAATGATGGATAAGGTGCGTACATTGAG
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