FC876383

Overview
NameFC876383
Unique NameFC876383
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length467
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC876383_ssr24 microsatellite FC876383_ssr24:24..39. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10211 contig Ccv1_Contig10211:1..467. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC876383 vs. ExPASy Swiss-Prot
Match: HSP81_ORYSJ (Heat shock protein 81-1 OS=Oryza sativa subsp. japonica GN=HSP81-1 PE=2 SV=2)

HSP 1 Score: 216.468 bits (550), Expect = 4.616e-56
Identity = 112/117 (95.73%), Postives = 115/117 (98.29%), Query Frame = 3 
Query:  117 MASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALGKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 467
            MASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDAL KIRFESLTDKSKLDAQPELFIHI+PDK +NTLSIIDSGIGMTK+DLVNNLGTIARSGTKEFMEALAAGADVS
Sbjct:    1 MASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIVPDKASNTLSIIDSGIGMTKSDLVNNLGTIARSGTKEFMEALAAGADVS 117
[Close]
BLAST of FC876383 vs. ExPASy Swiss-Prot
Match: HSP81_ORYSI (Heat shock protein 81-1 OS=Oryza sativa subsp. indica GN=HSP81-1 PE=2 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 4.616e-56
Identity = 112/117 (95.73%), Postives = 115/117 (98.29%), Query Frame = 3 
Query:  117 MASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALGKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 467
            MASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDAL KIRFESLTDKSKLDAQPELFIHI+PDK +NTLSIIDSGIGMTK+DLVNNLGTIARSGTKEFMEALAAGADVS
Sbjct:    1 MASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIVPDKASNTLSIIDSGIGMTKSDLVNNLGTIARSGTKEFMEALAAGADVS 117
[Close]
BLAST of FC876383 vs. ExPASy Swiss-Prot
Match: HSP83_ORYSJ (Heat shock protein 81-3 OS=Oryza sativa subsp. japonica GN=HSP81-3 PE=2 SV=2)

HSP 1 Score: 216.083 bits (549), Expect = 6.029e-56
Identity = 111/117 (94.87%), Postives = 115/117 (98.29%), Query Frame = 3 
Query:  117 MASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALGKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 467
            MASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDAL KIRFESLTDKSKLDAQPELFIHI+PDK +NTLSIIDSG+GMTK+DLVNNLGTIARSGTKEFMEALAAGADVS
Sbjct:    1 MASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIVPDKASNTLSIIDSGVGMTKSDLVNNLGTIARSGTKEFMEALAAGADVS 117
[Close]
BLAST of FC876383 vs. ExPASy Swiss-Prot
Match: HSP82_ORYSJ (Heat shock protein 81-2 OS=Oryza sativa subsp. japonica GN=HSP81-2 PE=2 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 6.029e-56
Identity = 111/117 (94.87%), Postives = 115/117 (98.29%), Query Frame = 3 
Query:  117 MASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALGKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 467
            MASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDAL KIRFESLTDKSKLDAQPELFIHI+PDK +NTLSIIDSG+GMTK+DLVNNLGTIARSGTKEFMEALAAGADVS
Sbjct:    1 MASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIVPDKASNTLSIIDSGVGMTKSDLVNNLGTIARSGTKEFMEALAAGADVS 117
[Close]
BLAST of FC876383 vs. ExPASy Swiss-Prot
Match: HSP83_ARATH (Heat shock protein 81-3 OS=Arabidopsis thaliana GN=HSP81-3 PE=2 SV=2)

HSP 1 Score: 211.46 bits (537), Expect = 1.485e-54
Identity = 109/115 (94.78%), Postives = 112/115 (97.39%), Query Frame = 3 
Query:  123 SETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALGKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 467
            ++ ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDAL KIRFESLTDKSKLD QPELFIHIIPDKTNNTL+IIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS
Sbjct:    2 ADAETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIHIIPDKTNNTLTIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 116
[Close]
BLAST of FC876383 vs. ExPASy Swiss-Prot
Match: HSP82_ARATH (Heat shock protein 81-2 OS=Arabidopsis thaliana GN=HSP81-2 PE=1 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 1.485e-54
Identity = 109/115 (94.78%), Postives = 112/115 (97.39%), Query Frame = 3 
Query:  123 SETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALGKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 467
            ++ ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDAL KIRFESLTDKSKLD QPELFIHIIPDKTNNTL+IIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS
Sbjct:    2 ADAETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIHIIPDKTNNTLTIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 116
[Close]
BLAST of FC876383 vs. ExPASy Swiss-Prot
Match: HSP80_SOLLC (Heat shock cognate protein 80 OS=Solanum lycopersicum GN=HSC80 PE=2 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 2.533e-54
Identity = 109/115 (94.78%), Postives = 111/115 (96.52%), Query Frame = 3 
Query:  123 SETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALGKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 467
            S+ ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDAL KIRFESLTDKSKLD QPELFIHIIPDK NNTL+IIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS
Sbjct:    2 SDVETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIHIIPDKANNTLTIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 116
[Close]
BLAST of FC876383 vs. ExPASy Swiss-Prot
Match: HSP83_IPONI (Heat shock protein 83 OS=Ipomoea nil GN=HSP83A PE=2 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 4.044e-52
Identity = 104/115 (90.43%), Postives = 109/115 (94.78%), Query Frame = 3 
Query:  123 SETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALGKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 467
            +E ETFAFQAEINQLLSLIINTFYSNKEIFLRELISN+SDAL KIRFESLTDKSKLDAQPELFI ++PDKTN TLSIIDSG+GM KADLVNNLGTIARSGTKEFMEAL AGADVS
Sbjct:    7 AEAETFAFQAEINQLLSLIINTFYSNKEIFLRELISNASDALDKIRFESLTDKSKLDAQPELFIRLVPDKTNKTLSIIDSGVGMAKADLVNNLGTIARSGTKEFMEALQAGADVS 121
[Close]
BLAST of FC876383 vs. ExPASy Swiss-Prot
Match: HSP81_ARATH (Heat shock protein 81-1 OS=Arabidopsis thaliana GN=HSP81-1 PE=1 SV=3)

HSP 1 Score: 202.601 bits (514), Expect = 6.898e-52
Identity = 104/115 (90.43%), Postives = 109/115 (94.78%), Query Frame = 3 
Query:  123 SETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALGKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 467
            ++ ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDAL KIRFESLTDKSKLD QPELFI ++PDK+N TLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAL AGADVS
Sbjct:    2 ADAETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRLVPDKSNKTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALQAGADVS 116
[Close]
BLAST of FC876383 vs. ExPASy Swiss-Prot
Match: HSP82_MAIZE (Heat shock protein 82 OS=Zea mays GN=HSP82 PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 1.879e-49
Identity = 101/116 (87.07%), Postives = 110/116 (94.83%), Query Frame = 3 
Query:  123 SETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALGKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGA-DVS 467
            +ETETFAFQAEINQLLSLIINTFYSNKEIFLRELISN+SDAL KIRFESLTDKS ++AQPELFI ++PDK + TLSIIDSG+GMTK+DLVNNLGTIARSGTKEFMEALAAGA DVS
Sbjct:   12 AETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNASDALDKIRFESLTDKSNVNAQPELFIRLVPDKASKTLSIIDSGVGMTKSDLVNNLGTIARSGTKEFMEALAAGATDVS 127
The following BLAST results are available for this feature:
BLAST of FC876383 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 375
Match NameE-valueIdentityDescription
HSP81_ORYSJ4.616e-5695.73Heat shock protein 81-1 OS=Oryza sativa subsp. jap... [more]
HSP81_ORYSI4.616e-5695.73Heat shock protein 81-1 OS=Oryza sativa subsp. ind... [more]
HSP83_ORYSJ6.029e-5694.87Heat shock protein 81-3 OS=Oryza sativa subsp. jap... [more]
HSP82_ORYSJ6.029e-5694.87Heat shock protein 81-2 OS=Oryza sativa subsp. jap... [more]
HSP83_ARATH1.485e-5494.78Heat shock protein 81-3 OS=Arabidopsis thaliana GN... [more]
HSP82_ARATH1.485e-5494.78Heat shock protein 81-2 OS=Arabidopsis thaliana GN... [more]
HSP80_SOLLC2.533e-5494.78Heat shock cognate protein 80 OS=Solanum lycopersi... [more]
HSP83_IPONI4.044e-5290.43Heat shock protein 83 OS=Ipomoea nil GN=HSP83A PE=... [more]
HSP81_ARATH6.898e-5290.43Heat shock protein 81-1 OS=Arabidopsis thaliana GN... [more]
HSP82_MAIZE1.879e-4987.07Heat shock protein 82 OS=Zea mays GN=HSP82 PE=3 SV... [more]

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Properties
Property NameValue
Genbank descriptionC32004B04EF DevOvary1 Citrus clementina cDNA clone C32004B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876383 ID=FC876383; Name=FC876383; organism=Citrus clementina; type=EST; length=467bp
GGAAACTAACTCTCTGCGTTTTTTCTCTCTCTCTCTCTCTGTCTCTCGTT
CGCTTCCAAACCCCTAGTTTATAATTCAGAAGAGATCGTTTTTTGGTTGA
ACGGCAGGTCGTTTCGATGGCATCAGAGACAGAGACGTTTGCCTTTCAGG
CTGAGATCAACCAGTTGTTGAGTTTGATCATCAACACCTTTTACAGCAAC
AAGGAGATCTTTCTTCGTGAGCTCATCAGCAACTCCTCCGATGCATTGGG
TAAGATCAGATTTGAAAGCTTGACAGACAAGAGCAAGCTAGATGCCCAAC
CAGAGCTTTTCATCCACATTATCCCTGATAAGACCAACAACACTTTGTCT
ATTATTGACAGTGGTATTGGCATGACTAAGGCTGATTTGGTGAACAACCT
TGGTACAATTGCTAGGTCTGGGACCAAAGAGTTCATGGAGGCATTGGCTG
CTGGGGCGGATGTGAGC
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