FC876388

Overview
NameFC876388
Unique NameFC876388
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length665
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10344 contig Ccv1_Contig10344:1..665. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876388 vs. ExPASy Swiss-Prot
Match: PER15_IPOBA (Peroxidase 15 OS=Ipomoea batatas GN=pod PE=1 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 1.046e-60
Identity = 119/182 (65.38%), Postives = 143/182 (78.57%), Query Frame = 1
Query:  103 SSSQAQLTPDFYNTTCPNASNIILGVLQNAFNSDIRITASLIRLHFHDCFVNGCDGSILLDNVANDTSIDSEKFSMANNNSARGFEVVDAMKAALESACPGIVSCADILAIASEQSVNLSGGPSWTVPLGRRDGRTANRSLADQNLPTPFQTLDLLKGRFTNVGLNDNTDLVALSGAHTFGR 648
            S S AQL+  FY+TTCPN S I+  V+Q A  +D RI  SLIRLHFHDCFV+GCDGS+LLDN  N T+I SEK ++ N NS RGF+VVD +K A+E+ACPG+VSC DILA+ASE SV+L+GGPSW V LGRRD RTAN+  A+ +LP+PF+ L  L  +FTNVGLN N DLVALSGAHTFGR
Sbjct:   19 SHSNAQLSSTFYSTTCPNVSAIVRTVVQQALQNDARIGGSLIRLHFHDCFVDGCDGSLLLDN--NGTTIVSEKDALPNTNSTRGFDVVDNIKTAVENACPGVVSCVDILALASESSVSLAGGPSWNVLLGRRDRRTANQGGANTSLPSPFENLTNLTQKFTNVGLNVN-DLVALSGAHTFGR 197          
BLAST of FC876388 vs. ExPASy Swiss-Prot
Match: PER1A_ARMRU (Peroxidase C1A OS=Armoracia rusticana GN=PRXC1A PE=1 SV=2)

HSP 1 Score: 230.72 bits (587), Expect = 5.192e-60
Identity = 117/187 (62.57%), Postives = 135/187 (72.19%), Query Frame = 1
Query:  103 SSSQAQLTPDFYNTTCPNASNIILGVLQNAFNSDIRITASLIRLHFHDCFVNGCDGSILLDNVANDTSIDSEKFSMANNNSARGFEVVDAMKAALESACPGIVSCADILAIASEQSVNLSGGPSWTVPLGRRDGRTANRSLADQNLPTPFQTLDLLKGRFTNVGLNDNTDLVALSGAHTFGRGTVSF 663
            S S AQLTP FY+ +CPN SNI+   + N   SD RI AS++RLHFHDCFVNGCD SILLDN    TS  +EK +  N NSARGF V+D MKAA+ESACP  VSCAD+L IA++QSV L+GGPSW VPLGRRD   A   LA+ NLP PF TL  LK  F NVGLN ++DLVALSG HTFG+    F
Sbjct:   26 SLSDAQLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNT---TSFRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRF 209          
BLAST of FC876388 vs. ExPASy Swiss-Prot
Match: PER1B_ARMRU (Peroxidase C1B OS=Armoracia rusticana GN=PRXC1B PE=3 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 2.577e-59
Identity = 116/187 (62.03%), Postives = 136/187 (72.73%), Query Frame = 1
Query:  103 SSSQAQLTPDFYNTTCPNASNIILGVLQNAFNSDIRITASLIRLHFHDCFVNGCDGSILLDNVANDTSIDSEKFSMANNNSARGFEVVDAMKAALESACPGIVSCADILAIASEQSVNLSGGPSWTVPLGRRDGRTANRSLADQNLPTPFQTLDLLKGRFTNVGLNDNTDLVALSGAHTFGRGTVSF 663
            S S AQLTP FY+T+CPN SNI+  ++ N   SD RITAS++RLHFHDCFVNGCD SILLDN    TS  +EK ++ N NSARGF  VD +KAA+E ACP  VSCAD+L IA++QSVNL+GGPSW VPLGRRD   A   LA+ NLP PF TL  LK  F  VGL+  +DLVALSG HTFG+    F
Sbjct:   24 SLSDAQLTPTFYDTSCPNVSNIVRDIIINELRSDPRITASILRLHFHDCFVNGCDASILLDNT---TSFLTEKDALGNANSARGFPTVDRIKAAVERACPRTVSCADVLTIAAQQSVNLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDAFAKVGLDRPSDLVALSGGHTFGKNQCRF 207          
BLAST of FC876388 vs. ExPASy Swiss-Prot
Match: PER54_ARATH (Peroxidase 54 OS=Arabidopsis thaliana GN=PER54 PE=2 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 3.365e-59
Identity = 117/182 (64.29%), Postives = 141/182 (77.47%), Query Frame = 1
Query:  106 SSQAQLTPDFYNTTCPNASNIILGVLQNAFNSDIRITASLIRLHFHDCFVNGCDGSILLDNVANDTSIDSEKFSMANNNSARGFEVVDAMKAALESACPGIVSCADILAIASEQSVNLSGGPSWTVPLGRRDGRTANRSLADQNLPTPFQTLDLLKGRFTNVGLNDNTDLVALSGAHTFGRG 651
            +S AQL   FY+ TCPNAS I+   +Q A  SD RI  SLIRLHFHDCFVNGCDGS+LLD+ +   SI SEK + AN NS RGF VVD++K ALE+ACPGIVSC+DILA+ASE SV+L+GGPSWTV LGRRDG TAN S A+ +LP+PF+ L+ +  +F  VGL   TD+V+LSGAHTFGRG
Sbjct:   28 TSSAQLNATFYSGTCPNASAIVRSTIQQALQSDARIGGSLIRLHFHDCFVNGCDGSLLLDDTS---SIQSEKNAPANANSTRGFNVVDSIKTALENACPGIVSCSDILALASEASVSLAGGPSWTVLLGRRDGLTANLSGANSSLPSPFEGLNNITSKFVAVGLK-TTDVVSLSGAHTFGRG 205          
BLAST of FC876388 vs. ExPASy Swiss-Prot
Match: PER1C_ARMRU (Peroxidase C1C (Fragment) OS=Armoracia rusticana GN=PRXC1C PE=3 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 4.395e-59
Identity = 116/187 (62.03%), Postives = 134/187 (71.66%), Query Frame = 1
Query:  103 SSSQAQLTPDFYNTTCPNASNIILGVLQNAFNSDIRITASLIRLHFHDCFVNGCDGSILLDNVANDTSIDSEKFSMANNNSARGFEVVDAMKAALESACPGIVSCADILAIASEQSVNLSGGPSWTVPLGRRDGRTANRSLADQNLPTPFQTLDLLKGRFTNVGLNDNTDLVALSGAHTFGRGTVSF 663
            S S AQLTP FY+ +CPN SNI+  ++ N   SD  I AS++RLHFHDCFVNGCD SILLDN    TS  +EK +  N NSARGF VVD +KAA+E ACP  VSCAD+L IA++QSVNL+GGPSW VPLGRRD R A   LA+ NLP P  TL  LK  F NVGLN  +DLVALSG HTFG+    F
Sbjct:    5 SFSNAQLTPTFYDNSCPNVSNIVRDIIINELRSDPSIAASILRLHFHDCFVNGCDASILLDNT---TSFRTEKDAFGNANSARGFPVVDRIKAAVERACPRTVSCADVLTIAAQQSVNLAGGPSWRVPLGRRDSRQAFLDLANANLPAPSFTLPELKAAFANVGLNRPSDLVALSGGHTFGKNQCRF 188          
BLAST of FC876388 vs. ExPASy Swiss-Prot
Match: PER33_ARATH (Peroxidase 33 OS=Arabidopsis thaliana GN=PER33 PE=1 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 2.181e-58
Identity = 114/187 (60.96%), Postives = 134/187 (71.66%), Query Frame = 1
Query:  103 SSSQAQLTPDFYNTTCPNASNIILGVLQNAFNSDIRITASLIRLHFHDCFVNGCDGSILLDNVANDTSIDSEKFSMANNNSARGFEVVDAMKAALESACPGIVSCADILAIASEQSVNLSGGPSWTVPLGRRDGRTANRSLADQNLPTPFQTLDLLKGRFTNVGLNDNTDLVALSGAHTFGRGTVSF 663
            S S AQLTP FY+T+CP  +NI+   + N   SD RI  S++RLHFHDCFVNGCD SILLDN    TS  +EK ++ N NSARGF V+D MKAA+E ACP  VSCAD+L IA++QSV L+GGPSW VPLGRRD   A   LA+ NLP PF TL  LK  F NVGL+  +DLVALSGAHTFG+    F
Sbjct:   27 SFSDAQLTPTFYDTSCPTVTNIVRDTIVNELRSDPRIAGSILRLHFHDCFVNGCDASILLDNT---TSFRTEKDALGNANSARGFPVIDRMKAAVERACPRTVSCADMLTIAAQQSVTLAGGPSWKVPLGRRDSLQAFLDLANANLPAPFFTLPQLKANFKNVGLDRPSDLVALSGAHTFGKNQCRF 210          
BLAST of FC876388 vs. ExPASy Swiss-Prot
Match: PER34_ARATH (Peroxidase 34 OS=Arabidopsis thaliana GN=PER34 PE=1 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 6.346e-58
Identity = 114/187 (60.96%), Postives = 133/187 (71.12%), Query Frame = 1
Query:  103 SSSQAQLTPDFYNTTCPNASNIILGVLQNAFNSDIRITASLIRLHFHDCFVNGCDGSILLDNVANDTSIDSEKFSMANNNSARGFEVVDAMKAALESACPGIVSCADILAIASEQSVNLSGGPSWTVPLGRRDGRTANRSLADQNLPTPFQTLDLLKGRFTNVGLNDNTDLVALSGAHTFGRGTVSF 663
            S S AQLTP FY+ +CPN +NI+   + N   SD RI AS++RLHFHDCFVNGCD SILLDN    TS  +EK +  N NSARGF V+D MKAA+E ACP  VSCAD+L IA++QSV L+GGPSW VPLGRRD   A   LA+ NLP PF TL  LK  F NVGL+  +DLVALSG HTFG+    F
Sbjct:   26 SLSAAQLTPTFYDRSCPNVTNIVRETIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNT---TSFRTEKDAFGNANSARGFPVIDRMKAAVERACPRTVSCADMLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLELANANLPAPFFTLPQLKASFRNVGLDRPSDLVALSGGHTFGKNQCQF 209          
BLAST of FC876388 vs. ExPASy Swiss-Prot
Match: PER32_ARATH (Peroxidase 32 OS=Arabidopsis thaliana GN=PER32 PE=1 SV=3)

HSP 1 Score: 223.402 bits (568), Expect = 8.289e-58
Identity = 114/187 (60.96%), Postives = 134/187 (71.66%), Query Frame = 1
Query:  103 SSSQAQLTPDFYNTTCPNASNIILGVLQNAFNSDIRITASLIRLHFHDCFVNGCDGSILLDNVANDTSIDSEKFSMANNNSARGFEVVDAMKAALESACPGIVSCADILAIASEQSVNLSGGPSWTVPLGRRDGRTANRSLADQNLPTPFQTLDLLKGRFTNVGLNDNTDLVALSGAHTFGRGTVSF 663
            S S AQLTP FY+ TCP+   I+   + N   SD RI AS++RLHFHDCFVNGCD SILLDN    TS  +EK +  N NSARGF V+D MKAA+E+ACP  VSCADIL IA++Q+VNL+GGPSW VPLGRRD   A  +LA+ NLP PF TL  LK  F NVGL+  +DLVALSG HTFG+    F
Sbjct:   25 SISSAQLTPTFYDNTCPSVFTIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNT---TSFRTEKDAAPNANSARGFPVIDRMKAAVETACPRTVSCADILTIAAQQAVNLAGGPSWRVPLGRRDSLQAFFALANTNLPAPFFTLPQLKASFQNVGLDRPSDLVALSGGHTFGKNQCQF 208          
BLAST of FC876388 vs. ExPASy Swiss-Prot
Match: PER53_ARATH (Peroxidase 53 OS=Arabidopsis thaliana GN=PER53 PE=1 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 7.017e-57
Identity = 114/181 (62.98%), Postives = 138/181 (76.24%), Query Frame = 1
Query:  106 SSQAQLTPDFYNTTCPNASNIILGVLQNAFNSDIRITASLIRLHFHDCFVNGCDGSILLDNVANDTSIDSEKFSMANNNSARGFEVVDAMKAALESACPGIVSCADILAIASEQSVNLSGGPSWTVPLGRRDGRTANRSLADQNLPTPFQTLDLLKGRFTNVGLNDNTDLVALSGAHTFGR 648
            +S AQL   FY+ TCPNAS I+   +Q A  SD RI ASLIRLHFHDCFVNGCD SILLD+     SI SEK +  N NSARGF VVD +K ALE+ACPG+VSC+D+LA+ASE SV+L+GGPSWTV LGRRD  TAN + A+ ++P+P ++L  +  +F+ VGLN N DLVALSGAHTFGR
Sbjct:   27 TSSAQLNATFYSGTCPNASAIVRSTIQQALQSDTRIGASLIRLHFHDCFVNGCDASILLDDTG---SIQSEKNAGPNVNSARGFNVVDNIKTALENACPGVVSCSDVLALASEASVSLAGGPSWTVLLGRRDSLTANLAGANSSIPSPIESLSNITFKFSAVGLNTN-DLVALSGAHTFGR 203          
BLAST of FC876388 vs. ExPASy Swiss-Prot
Match: PER37_ARATH (Peroxidase 37 OS=Arabidopsis thaliana GN=PER37 PE=2 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 7.017e-57
Identity = 112/187 (59.89%), Postives = 133/187 (71.12%), Query Frame = 1
Query:  103 SSSQAQLTPDFYNTTCPNASNIILGVLQNAFNSDIRITASLIRLHFHDCFVNGCDGSILLDNVANDTSIDSEKFSMANNNSARGFEVVDAMKAALESACPGIVSCADILAIASEQSVNLSGGPSWTVPLGRRDGRTANRSLADQNLPTPFQTLDLLKGRFTNVGLNDNTDLVALSGAHTFGRGTVSF 663
            S S AQL+P FY+ TCP   +I    + NA  SD RI AS++RLHFHDCFVNGCD SILLDN    TS  +EK +  N NSARGF+V+D MKAA+E ACP  VSCAD+LAIA+++SV L+GGPSW VP GRRD       LA+ NLP PF TL+ LK RF NVGL+  +DLVALSG HTFG+    F
Sbjct:   18 SLSHAQLSPSFYDKTCPQVFDIATTTIVNALRSDPRIAASILRLHFHDCFVNGCDASILLDNT---TSFRTEKDAFGNANSARGFDVIDKMKAAVEKACPKTVSCADLLAIAAQESVVLAGGPSWRVPNGRRDSLRGFMDLANDNLPAPFFTLNQLKDRFKNVGLDRASDLVALSGGHTFGKNQCQF 201          
The following BLAST results are available for this feature:
BLAST of FC876388 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
PER15_IPOBA1.046e-6065.38Peroxidase 15 OS=Ipomoea batatas GN=pod PE=1 SV=1[more]
PER1A_ARMRU5.192e-6062.57Peroxidase C1A OS=Armoracia rusticana GN=PRXC1A PE... [more]
PER1B_ARMRU2.577e-5962.03Peroxidase C1B OS=Armoracia rusticana GN=PRXC1B PE... [more]
PER54_ARATH3.365e-5964.29Peroxidase 54 OS=Arabidopsis thaliana GN=PER54 PE=... [more]
PER1C_ARMRU4.395e-5962.03Peroxidase C1C (Fragment) OS=Armoracia rusticana G... [more]
PER33_ARATH2.181e-5860.96Peroxidase 33 OS=Arabidopsis thaliana GN=PER33 PE=... [more]
PER34_ARATH6.346e-5860.96Peroxidase 34 OS=Arabidopsis thaliana GN=PER34 PE=... [more]
PER32_ARATH8.289e-5860.96Peroxidase 32 OS=Arabidopsis thaliana GN=PER32 PE=... [more]
PER53_ARATH7.017e-5762.98Peroxidase 53 OS=Arabidopsis thaliana GN=PER53 PE=... [more]
PER37_ARATH7.017e-5759.89Peroxidase 37 OS=Arabidopsis thaliana GN=PER37 PE=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32004B11EF DevOvary1 Citrus clementina cDNA clone C32004B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876388 ID=FC876388; Name=FC876388; organism=Citrus clementina; type=EST; length=665bp
GACTCCTTAGACAACACTCACTAATTTCTCTTCAAAAGGAAAATGTCTCC
TCTTCGTTATCTTCTTGCAGCAGCTGTCCTTTTCGCGTTTGTGCTTGACG
AATCATCATCTCAAGCTCAGCTTACGCCAGATTTTTACAACACCACATGC
CCTAATGCATCAAACATCATTCTGGGTGTTCTTCAGAATGCTTTCAATTC
CGATATCCGAATCACTGCCAGCCTCATCAGGCTTCATTTTCATGACTGCT
TTGTCAACGGCTGTGATGGGTCAATCTTGCTGGACAACGTTGCCAATGAT
ACGAGCATAGACAGCGAGAAATTTTCGATGGCAAATAATAATTCAGCAAG
AGGTTTCGAAGTTGTTGATGCCATGAAAGCAGCCCTTGAGAGTGCCTGTC
CTGGCATTGTTTCCTGTGCTGATATTCTTGCCATTGCTTCTGAACAATCC
GTCAATTTGTCAGGTGGTCCTTCATGGACAGTTCCACTGGGAAGAAGAGA
CGGCAGGACAGCGAACAGGAGCCTTGCAGATCAGAATCTTCCAACACCAT
TTCAGACTCTTGATTTGCTCAAAGGCAGATTTACAAATGTCGGTCTCAAC
GACAATACTGATCTGGTTGCACTCTCCGGCGCTCACACTTTTGGAAGGGG
CACAGTGTCATTTTT
back to top