FC876391

Overview
NameFC876391
Unique NameFC876391
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10346 contig Ccv1_Contig10346:1..677. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876391 vs. ExPASy Swiss-Prot
Match: DR100_ARATH (DNA-damage-repair/toleration protein DRT100 OS=Arabidopsis thaliana GN=DRT100 PE=2 SV=2)

HSP 1 Score: 222.631 bits (566), Expect = 1.466e-57
Identity = 106/181 (58.56%), Postives = 136/181 (75.14%), Query Frame = 1
Query:  112 AQLLLIFLAXXXXXXNCCPPSERAALLAFKAALHEPYLGIFNSWTGN-DCCHNWYGVSCDQETHRVADINLRGESEDPIFQRAHRTGYMTGYISPAVCKLTRLSSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDL 651
            + LL +          CC P ++ AL AFK++L EP LGIFN+W+ N DCC  WYG+SCD ++ RV DI+LRGESED IFQ+A R+GYM+G I PAVC LT L+SL LADWKGITGEIP CI+S+  LRILDL GNK++G+IP +IG+L +LAVLN+A+N +SG IP S+ +L  L HL+L
Sbjct:   10 SSLLAVVFISVISVVRCCSPKDQTALNAFKSSLSEPNLGIFNTWSENTDCCKEWYGISCDPDSGRVTDISLRGESEDAIFQKAGRSGYMSGSIDPAVCDLTALTSLVLADWKGITGEIPPCITSLASLRILDLAGNKITGEIPAEIGKLSKLAVLNLAENQMSGEIPASLTSLIELKHLEL 190          
BLAST of FC876391 vs. ExPASy Swiss-Prot
Match: PGIP_VITVI (Polygalacturonase inhibitor OS=Vitis vinifera GN=pgip PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.752e-18
Identity = 61/184 (33.15%), Postives = 89/184 (48.37%), Query Frame = 1
Query:  109 TAQLLLIFLAXXXXXX--NCCPPSERAALLAFKAALHEPYLGIFNSWTGNDCCHNWYGVSCDQETHRVADINLRGESEDPIFQRAHRTGYMTGYISPAVCKLTRLSSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSL--MHLD 648
            ++ LLL+ LA          C P ++  LL  K AL  PY  I  SW  N  C  WY V CD  THR+  + +              +G ++G I  AV  L  L +L       +TG+IP  I+ +  L+++ L    LSG +P     L  L  L+++ NN+SG IP S++ L +L  +HLD
Sbjct:   10 SSSLLLVLLATRPCPSLSERCNPKDKKVLLQIKKALDNPY--ILASWNPNTDCCGWYCVECDLTTHRINSLTIF-------------SGQLSGQIPDAVGDLPFLETLIFRKLSNLTGQIPPAIAKLKHLKMVRLSWTNLSGPVPAFFSELKNLTYLDLSFNNLSGPIPGSLSLLPNLGALHLD 178          
BLAST of FC876391 vs. ExPASy Swiss-Prot
Match: PGIP1_ORYSJ (Polygalacturonase inhibitor 1 OS=Oryza sativa subsp. japonica GN=FOR1 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.752e-18
Identity = 62/193 (32.12%), Postives = 98/193 (50.78%), Query Frame = 1
Query:   85 MGGCVSFYTAQLLLIFLAXXXXXXNCCPPSERAALLAFKAALHEPYLGIFNSWTGNDCCHNWYGVSCDQETHRVADINLRGESEDPIFQRAHRTGYMTGYISPAVCKLTRLSSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNTE 663
            M    SF  A LL + +A        CPPS++ AL+  K +L  P      S    DCC  W  V CD E  RV ++ + G ++            + G I  AV  LT L SL+L    G++G IP C++++  L+ L +    +SG IP  + R+  L  ++++ N+++G IP S ++L +L  LDLR+ +
Sbjct:    1 MASTASFMLAVLLAVAVAAAPARAVRCPPSDKQALMRVKQSLGNPATLSTWSLASADCC-EWDHVRCD-EAGRVNNVFIDGAND------------VRGQIPSAVAGLTALMSLSLFRLPGLSGPIPACLTALSNLQFLTISHTNVSGVIPDSLARIRSLDSVDLSHNSLTGPIPNSFSDLPNLRSLDLRSNK 179          
BLAST of FC876391 vs. ExPASy Swiss-Prot
Match: Y1684_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g06840 OS=Arabidopsis thaliana GN=At1g06840 PE=1 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 7.361e-17
Identity = 58/163 (35.58%), Postives = 85/163 (52.15%), Query Frame = 1
Query:  169 PSERAALLAFKAALHEPYLGIFNSWTGNDCCHNWYGVSCDQETHRVADINLRGESEDPIFQRAHRTGYMTGYISPAVCKLTRLSSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRN 657
            P E  AL   K +L++P   + N   G+ C  NW GV C   T    D      SE  +F        ++G +SP + +L+RL+ L+   W  ITG IP+ I +I  L +L L GN L+G++P ++G L  L  + I +N ISG +P S ANL+   H  + N
Sbjct:   35 PVEVRALRVIKESLNDPVHRLRNWKHGDPCNSNWTGVVCFNST---LDDGYLHVSELQLFSMN-----LSGNLSPELGRLSRLTILSFM-WNKITGSIPKEIGNIKSLELLLLNGNLLNGNLPEELGFLPNLDRIQIDENRISGPLPKSFANLNKTKHFHMNN 188          
BLAST of FC876391 vs. ExPASy Swiss-Prot
Match: PGIP2_ARATH (Polygalacturonase inhibitor 2 OS=Arabidopsis thaliana GN=PGIP2 PE=2 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 3.093e-15
Identity = 56/185 (30.27%), Postives = 82/185 (44.32%), Query Frame = 1
Query:  118 LLLIFLAXXXXXXNCCPPSERAALLAFKAALHEPYLGIFNSWTGNDCCHNWYGVSCDQET--HRVADINLR-GESEDPIFQRAHRTGYMT-----------GYISPAVCKLTRLSSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLS 630
            LL   L       + C   ++  LL  K +L+ PY     SW     C +WY + C   T  HRV  + ++ GE    I        Y+T           G+I P + KL  L+ L L+ W  +TG +P  +S +  L  +DL  N LSG IP  +  L +L  L ++ N ++G IP S    S
Sbjct:   10 LLSTLLLTTSLAKDLCHKDDKTTLLKIKKSLNNPYH--LASWDPKTDCCSWYCLECGDATVNHRVTSLIIQDGEISGQIPPEVGDLPYLTSLIFRKLTNLTGHIQPTIAKLKNLTFLRLS-WTNLTGPVPEFLSQLKNLEYIDLSFNDLSGSIPSSLSSLRKLEYLELSRNKLTGPIPESFGTFS 191          
BLAST of FC876391 vs. ExPASy Swiss-Prot
Match: EFR_ARATH (LRR receptor-like serine/threonine-protein kinase EFR OS=Arabidopsis thaliana GN=EFR PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.276e-15
Identity = 56/190 (29.47%), Postives = 87/190 (45.79%), Query Frame = 1
Query:  172 SERAALLAFKAALHEPYLG-IFNSWTGNDCCHNWYGVSCDQETHRVADINLRGESEDPIFQRAHRTGYMTGYISPAVCKLTRLSSLTLAD-----------------------WKGITGEIPRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNTEFR 669
            ++  ALL FK+ + E     +  SW  +    NW GV+C +   RV  +NL G               +TG ISP++  L+ L  L LAD                       +  + G IP  +S+   L  +DL  N L   +P ++G L +LA+L+++ NN++G  P S+ NL+SL  LD    + R
Sbjct:   30 TDMQALLEFKSQVSENNKREVLASWNHSSPFCNWIGVTCGRRRERVISLNLGGFK-------------LTGVISPSIGNLSFLRLLNLADNSFGSTIPQKVGRLFRLQYLNMSYNLLEGRIPSSLSNCSRLSTVDLSSNHLGHGVPSELGSLSKLAILDLSKNNLTGNFPASLGNLTSLQKLDFAYNQMR 206          
BLAST of FC876391 vs. ExPASy Swiss-Prot
Match: Y5694_ARATH (Probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 OS=Arabidopsis thaliana GN=At5g06940 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.890e-15
Identity = 58/200 (29.00%), Postives = 89/200 (44.50%), Query Frame = 1
Query:  106 YTAQLLLIFLAXXXXXXNCCPPSERAALLAFKAALHEPYLGIFNSWTGNDCCH--NWYGVSCDQ------ETHRVADINLRGESEDPIFQRAHRTGY---MTGYISPAVCKLTRLSSLTLADWKG--ITGEIPRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNTEF 666
            ++  L L F        +     E   LL FKA+  +P  G  + W      H  NW G++C +       +  +  +NL GE  D I    + T     +  +  P   +L+R  +L   +     I G IP  IS    L+++D   N + G IP D+G L  L VLN+  N ++G +PP+I  LS L+ LDL    +
Sbjct:    9 FSISLALTFFFFFTKTFSFTENEELGNLLRFKASFDDPK-GSLSGWFNTSSSHHCNWTGITCTRAPTLYVSSINLQSLNLSGEISDSICDLPYLTHLDLSLNFFNQPIPLQLSRCVTLETLNLSSNLIWGTIPDQISEFSSLKVIDFSSNHVEGMIPEDLGLLFNLQVLNLGSNLLTGIVPPAIGKLSELVVLDLSENSY 207          
BLAST of FC876391 vs. ExPASy Swiss-Prot
Match: PGIP_PYRCO (Polygalacturonase inhibitor OS=Pyrus communis GN=PGIP PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.999e-15
Identity = 50/163 (30.67%), Postives = 79/163 (48.47%), Query Frame = 1
Query:  163 CPPSERAALLAFKAALHEPYLGIFNSWTGNDCCHNWYGVSCDQETHRVADINLRGESEDPIFQRAHRTGYMTGYISPAVCKLTRLSSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDL 651
            C P ++  LL  K A  +PY  +  SW  +  C +WY V+CD  T+R+  + +               G ++G I   V  L  L +L       +TG I   I+ +  L+ L L    LSG +P  + +L  L  L+++ NN++GAIP S++ L +L  L L
Sbjct:   27 CNPDDKKVLLQIKKAFGDPY--VLASWKSDTDCCDWYCVTCDSTTNRINSLTIFA-------------GQVSGQIPALVGDLPYLETLEFHKQPNLTGPIQPAIAKLKGLKSLRLSWTNLSGSVPDFLSQLKNLTFLDLSFNNLTGAIPSSLSELPNLGALRL 174          
BLAST of FC876391 vs. ExPASy Swiss-Prot
Match: PGIP3_PHAVU (Polygalacturonase inhibitor 3 OS=Phaseolus vulgaris GN=PGIP3 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.466e-14
Identity = 63/191 (32.98%), Postives = 87/191 (45.55%), Query Frame = 1
Query:  118 LLLIFLAXXXXXXNCCPPSERAALLAFKAALHEPYLGIFNSWTGN-DCCHN-WYGVSCDQET--HRVADINLRGESED---PIFQRAHRTGYMT-----------GYISPAVCKLTRLSSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSL 636
            +L+I ++        C P ++ ALL  K  L  P     +SW    DCC+  W GV CD +T  +RV +++L G +     PI        Y+            G I PA+ KLT+L  L +     ++G IP  +S I  L  LD   N LSG +P  I  L  L  +    N ISGAIP S  + S L
Sbjct:   17 ILVILVSLRTALSELCNPQDKQALLQIKKDLGNPTT--LSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGHNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH-TNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKL 204          
BLAST of FC876391 vs. ExPASy Swiss-Prot
Match: PGIP1_PHAVU (Polygalacturonase inhibitor 1 OS=Phaseolus vulgaris GN=PGIP1 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.466e-14
Identity = 63/191 (32.98%), Postives = 87/191 (45.55%), Query Frame = 1
Query:  118 LLLIFLAXXXXXXNCCPPSERAALLAFKAALHEPYLGIFNSWTGN-DCCHN-WYGVSCDQET--HRVADINLRGESED---PIFQRAHRTGYMT-----------GYISPAVCKLTRLSSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSL 636
            +L+I ++        C P ++ ALL  K  L  P     +SW    DCC+  W GV CD +T  +RV +++L G +     PI        Y+            G I PA+ KLT+L  L +     ++G IP  +S I  L  LD   N LSG +P  I  L  L  +    N ISGAIP S  + S L
Sbjct:   17 ILVILVSLRTALSELCNPQDKQALLQIKKDLGNPTT--LSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGHNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH-TNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLGGITFDGNRISGAIPDSYGSFSKL 204          
The following BLAST results are available for this feature:
BLAST of FC876391 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
DR100_ARATH1.466e-5758.56DNA-damage-repair/toleration protein DRT100 OS=Ara... [more]
PGIP_VITVI1.752e-1833.15Polygalacturonase inhibitor OS=Vitis vinifera GN=p... [more]
PGIP1_ORYSJ1.752e-1832.12Polygalacturonase inhibitor 1 OS=Oryza sativa subs... [more]
Y1684_ARATH7.361e-1735.58Probable LRR receptor-like serine/threonine-protei... [more]
PGIP2_ARATH3.093e-1530.27Polygalacturonase inhibitor 2 OS=Arabidopsis thali... [more]
EFR_ARATH5.276e-1529.47LRR receptor-like serine/threonine-protein kinase ... [more]
Y5694_ARATH6.890e-1529.00Probably inactive leucine-rich repeat receptor-lik... [more]
PGIP_PYRCO8.999e-1530.67Polygalacturonase inhibitor OS=Pyrus communis GN=P... [more]
PGIP3_PHAVU4.466e-1432.98Polygalacturonase inhibitor 3 OS=Phaseolus vulgari... [more]
PGIP1_PHAVU4.466e-1432.98Polygalacturonase inhibitor 1 OS=Phaseolus vulgari... [more]

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Properties
Property NameValue
Genbank descriptionC32004C02EF DevOvary1 Citrus clementina cDNA clone C32004C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876391 ID=FC876391; Name=FC876391; organism=Citrus clementina; type=EST; length=677bp
GCCATGCCCATGCTCAAAACTCAATCCACTTCACTTCCCAACGTAAACCC
AAAACTCATCGTTTCGGATCAAGCAAAAACCAACATGGGTGGCTGTGTCT
CGTTTTACACTGCACAGCTTCTTCTAATCTTCCTCGCCGTTAGTTCTTCC
GTCGTTAACTGCTGCCCGCCGTCAGAGCGGGCAGCACTCTTAGCCTTCAA
AGCTGCCCTCCACGAGCCTTACTTGGGCATCTTCAACTCCTGGACGGGCA
ACGACTGTTGCCACAACTGGTACGGTGTTAGCTGTGACCAGGAAACTCAC
CGGGTCGCTGACATTAACCTACGTGGCGAGTCTGAGGACCCGATATTCCA
GCGGGCCCACCGAACCGGGTACATGACCGGGTATATCTCACCCGCTGTGT
GTAAACTCACGCGTCTCTCCAGTTTAACGCTCGCCGACTGGAAAGGCATC
ACCGGGGAAATCCCACGTTGCATTTCTTCAATTCCTTTTCTCCGCATTCT
TGATTTAATCGGAAATAAGTTATCGGGCGACATTCCCCGAGATATTGGCC
GGCTTCACAGACTCGCTGTCTTAAATATCGCCGATAACAACATATCGGGT
GCGATTCCCCCTTCCATTGCTAATCTTTCCAGCTTGATGCATCTTGACTT
GCGTAACACAGAATTTCGGGCCCGATT
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