FC876399

Overview
NameFC876399
Unique NameFC876399
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8669 contig Ccv1_Contig8669:60..772. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876399 vs. ExPASy Swiss-Prot
Match: ULA1_ARATH (NEDD8-activating enzyme E1 regulatory subunit OS=Arabidopsis thaliana GN=AXR1 PE=1 SV=1)

HSP 1 Score: 302.368 bits (773), Expect = 1.592e-81
Identity = 145/181 (80.11%), Postives = 161/181 (88.95%), Query Frame = 1
Query:  118 MAEPKTKYDRQLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGQSKAKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISVKEHTVVESKPDHFLDDLRLN 660
            M EPKTKYDRQLRIWGE GQAALE+AS+CLLNCGPTGSE LKNLVLGG+GSITV+DGSKV+ GDLGNNFM+D   VGQSKAKSVCAFLQELND+V AKFIEE P+ LI  NP FFSQFTLV+ATQL E+ M+KLDRICR+ANV L+  RSYGL GFVRISVKEH +++SKPDHFLDDLRLN
Sbjct:   17 MVEPKTKYDRQLRIWGEVGQAALEEASICLLNCGPTGSEALKNLVLGGVGSITVVDGSKVQFGDLGNNFMVDAKSVGQSKAKSVCAFLQELNDSVNAKFIEENPDTLITTNPSFFSQFTLVIATQLVEDSMLKLDRICRDANVKLVLVRSYGLAGFVRISVKEHPIIDSKPDHFLDDLRLN 197          
BLAST of FC876399 vs. ExPASy Swiss-Prot
Match: ULA1_CHICK (NEDD8-activating enzyme E1 regulatory subunit OS=Gallus gallus GN=NAE1 PE=2 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.113e-50
Identity = 97/187 (51.87%), Postives = 135/187 (72.19%), Query Frame = 1
Query:  118 MAEP------KTKYDRQLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGQSKAKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISVKEHTVVESKPDHFLDDLRLN 660
            MA+P      + +YDRQLR+WG+ GQ ALE A VC++N   TG+E LKNLVL GIGS T++DG++V   D+GNNF L +S +GQS+A+S    LQELN+ V   F+EE PE L++ +P FF++F LVVATQL E  +++L  +   +N+ L+  R+YGL G++RI +KEH VVES PD+ L+DLRL+
Sbjct:    1 MAQPGRASLKEQRYDRQLRLWGDHGQEALESAHVCVINATATGTEILKNLVLPGIGSFTIVDGNRVSGEDVGNNFFLQKSHIGQSRAQSATELLQELNNDVSGNFVEESPETLLDNDPSFFNRFNLVVATQLSESTVLRLAELLWNSNIPLLICRTYGLVGYMRIIIKEHPVVESHPDNALEDLRLD 187          
BLAST of FC876399 vs. ExPASy Swiss-Prot
Match: ULA1_MOUSE (NEDD8-activating enzyme E1 regulatory subunit OS=Mus musculus GN=Nae1 PE=2 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 3.580e-49
Identity = 96/186 (51.61%), Postives = 132/186 (70.97%), Query Frame = 1
Query:  118 MAEP-----KTKYDRQLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGQSKAKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISVKEHTVVESKPDHFLDDLRLN 660
            MA+P     + KYDRQLR+WG+ GQ ALE A VCL+N   TG+E LKNLVL GIGS T+IDG+ V   D GNNF L +S +G+++A++   FLQELN  V   F+EE PE L++ +P FF +FT+VVATQL E  +++L  +   + + L+  R+YGL G++RI +KEH V+ES PD+ L+DLRL+
Sbjct:    1 MAQPGKILKEQKYDRQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNLVSGEDAGNNFFLQKSSIGKNRAQAAMEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTIVVATQLLESTLLRLADVLWNSQIPLLICRTYGLVGYMRIIIKEHPVIESHPDNALEDLRLD 186          
BLAST of FC876399 vs. ExPASy Swiss-Prot
Match: ULA1_RAT (NEDD8-activating enzyme E1 regulatory subunit OS=Rattus norvegicus GN=Nae1 PE=1 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 6.107e-49
Identity = 92/175 (52.57%), Postives = 128/175 (73.14%), Query Frame = 1
Query:  136 KYDRQLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGQSKAKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISVKEHTVVESKPDHFLDDLRLN 660
            KYDRQLR+WG+ GQ ALE A VCL+N   TG+E LKNLVL GIGS T+IDG++V   D+GNNF L +  +G+++A++   FLQELN  V   F+EE PE L++ +P FF +FT+VVATQL E  +++L  +   + + L+  R+YGL G++RI +KEH V+ES PD+ L+DLRL+
Sbjct:   12 KYDRQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDVGNNFFLQKCSIGKNRAQAAMEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTIVVATQLLESTLLRLADVLWNSQIPLLICRTYGLVGYMRIIIKEHPVIESHPDNALEDLRLD 186          
BLAST of FC876399 vs. ExPASy Swiss-Prot
Match: ULA1_HUMAN (NEDD8-activating enzyme E1 regulatory subunit OS=Homo sapiens GN=NAE1 PE=1 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 6.107e-49
Identity = 93/175 (53.14%), Postives = 126/175 (72.00%), Query Frame = 1
Query:  136 KYDRQLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGQSKAKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISVKEHTVVESKPDHFLDDLRLN 660
            KYDRQLR+WG+ GQ ALE A VCL+N   TG+E LKNLVL GIGS T+IDG++V   D GNNF L  S +G+++A++   FLQELN  V   F+EE PE L++ +P FF +FT+VVATQL E   ++L  +   + + L+  R+YGL G++RI +KEH V+ES PD+ L+DLRL+
Sbjct:   12 KYDRQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVVATQLPESTSLRLADVLWNSQIPLLICRTYGLVGYMRIIIKEHPVIESHPDNALEDLRLD 186          
BLAST of FC876399 vs. ExPASy Swiss-Prot
Match: ULA1_DANRE (NEDD8-activating enzyme E1 regulatory subunit OS=Danio rerio GN=nae1 PE=2 SV=2)

HSP 1 Score: 191.045 bits (484), Expect = 5.170e-48
Identity = 94/185 (50.81%), Postives = 129/185 (69.73%), Query Frame = 1
Query:  118 MAEPKT----KYDRQLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGQSKAKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISVKEHTVVESKPDHFLDDLRLN 660
            M +PKT    KYDRQLR+WG+ GQ ALE A VCL+N   +G+E LKNLVL GIG+ T++DG KV   D+GNNF L  S +G+++A++    LQELN  V   F+EE P+ L++ +  FF +F+LV+A QL E   ++L  +  EA V  +  R+YGL G++R+ VKEHTVVES PD+ L+DLRL+
Sbjct:    1 MTDPKTSKEQKYDRQLRLWGDHGQEALENAHVCLINATASGTEILKNLVLPGIGAFTIVDGHKVSGEDVGNNFFLSSSAIGKNRAQAATELLQELNSDVSGNFVEESPDKLLDNDCEFFHRFSLVIAVQLPESTCLRLGAVLWEAGVPFLVCRTYGLIGYMRLIVKEHTVVESHPDNALEDLRLD 185          
BLAST of FC876399 vs. ExPASy Swiss-Prot
Match: ULA1_XENLA (NEDD8-activating enzyme E1 regulatory subunit OS=Xenopus laevis GN=nae1 PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.152e-47
Identity = 89/175 (50.86%), Postives = 126/175 (72.00%), Query Frame = 1
Query:  136 KYDRQLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGQSKAKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISVKEHTVVESKPDHFLDDLRLN 660
            KYDRQLR+WG+ GQ ALE A VCL+N   TG+E LKNLVL GIG  T++DG+ V   D+GNNF L +  +G+++A++    LQELND V   F+ E PE L++ +P FF +FT+V++TQL E  +++L     ++N+ L+  R+YG  G++RI VKEHTV+ES PD+ L+DLRL+
Sbjct:   11 KYDRQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGIGLFTIVDGNVVAGEDVGNNFFLQKESIGKNRAQTSMELLQELNDDVTGNFVPESPEQLLDKDPSFFCKFTMVISTQLPESTLLRLAETLWDSNIPLLVCRAYGFVGYMRIIVKEHTVIESHPDNALEDLRLD 185          
BLAST of FC876399 vs. ExPASy Swiss-Prot
Match: ULA1_DICDI (NEDD8-activating enzyme E1 regulatory subunit OS=Dictyostelium discoideum GN=nae1 PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.663e-46
Identity = 92/174 (52.87%), Postives = 119/174 (68.39%), Query Frame = 1
Query:  136 KYDRQLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGQSKAKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISVKEHTVVESKPDHFLDDLRL 657
            KYDRQLR+WGE GQ+ LE++ + LLN   TG+ETLKNLVL GIGS TV+D  KV   DLGNNF ++ S +G+ +A  VC  L+ELND VK   +EE P  LI  N  FF  F+LVVA +L EE ++ L +   E N+ L+   SYG  G++RIS  EH ++ESKPD  +DDLR+
Sbjct:   10 KYDRQLRLWGEDGQSKLERSHILLLNGSATGTETLKNLVLPGIGSFTVVDNKKVTESDLGNNFFVERSSLGKPRATVVCELLRELNDRVKGFSVEECPIHLINNNISFFKDFSLVVANRLSEEALLTLSQYLTEQNIPLLITNSYGYIGYLRISTPEHQIIESKPDDPIDDLRI 183          
BLAST of FC876399 vs. ExPASy Swiss-Prot
Match: ULA1_DROME (NEDD8-activating enzyme E1 regulatory subunit OS=Drosophila melanogaster GN=APP-BP1 PE=1 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.748e-41
Identity = 85/184 (46.20%), Postives = 117/184 (63.59%), Query Frame = 1
Query:  106 RTAAMAEPKTKYDRQLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGQSKAKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISVKEHTVVESKPDHFLDDLRL 657
            ++  +++   KYDRQ+R+WGE GQ  LE A+VCL+N    G ET K LVL GIG  TV DGS V+  DLGNNF LD S +G+SKA +    LQELN  V   +++E  + L+   P FF  F LV+A+ L E+ ++ L     E NV LI+ RS G+ G +R+ ++EH +VE+ PD+   DLRL
Sbjct:    7 KSPELSDKSKKYDRQIRLWGEHGQTLLEAATVCLVNVTAVGCETAKGLVLPGIGGFTVADGSTVKEEDLGNNFFLDSSYLGKSKALACMQLLQELNPDVNGDYVDESADFLLANRPNFFDSFDLVIASNLNEQTLLLLAERLWELNVPLIYCRSLGMLGTIRLQIREHCIVEAHPDNRQFDLRL 190          
BLAST of FC876399 vs. ExPASy Swiss-Prot
Match: ULA1_MACFA (NEDD8-activating enzyme E1 regulatory subunit OS=Macaca fascicularis GN=NAE1 PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.969e-39
Identity = 86/186 (46.24%), Postives = 117/186 (62.90%), Query Frame = 1
Query:  118 MAEP-----KTKYDRQLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGQSKAKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISVKEHTVVESKPDHFLDDLRLN 660
            MA+P     + KYDRQLR+WG+ GQ ALE A VCL+N   TG+E LKNLVL GIGS T+IDG++V   D GNNF L  S +G+S                        PE L++ +P FF +FT+VVATQL E  +++L  +   + + L+  R+YGL G++RI +KEH V+ES PD+ L+DLRL+
Sbjct:    1 MAQPGKLLKEQKYDRQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKS------------------------PENLLDNDPSFFCRFTVVVATQLPESTLLRLADVLWNSQIPLLICRTYGLVGYMRIIIKEHPVIESHPDNALEDLRLD 162          
The following BLAST results are available for this feature:
BLAST of FC876399 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
ULA1_ARATH1.592e-8180.11NEDD8-activating enzyme E1 regulatory subunit OS=A... [more]
ULA1_CHICK1.113e-5051.87NEDD8-activating enzyme E1 regulatory subunit OS=G... [more]
ULA1_MOUSE3.580e-4951.61NEDD8-activating enzyme E1 regulatory subunit OS=M... [more]
ULA1_RAT6.107e-4952.57NEDD8-activating enzyme E1 regulatory subunit OS=R... [more]
ULA1_HUMAN6.107e-4953.14NEDD8-activating enzyme E1 regulatory subunit OS=H... [more]
ULA1_DANRE5.170e-4850.81NEDD8-activating enzyme E1 regulatory subunit OS=D... [more]
ULA1_XENLA1.152e-4750.86NEDD8-activating enzyme E1 regulatory subunit OS=X... [more]
ULA1_DICDI1.663e-4652.87NEDD8-activating enzyme E1 regulatory subunit OS=D... [more]
ULA1_DROME2.748e-4146.20NEDD8-activating enzyme E1 regulatory subunit OS=D... [more]
ULA1_MACFA1.969e-3946.24NEDD8-activating enzyme E1 regulatory subunit OS=M... [more]

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Properties
Property NameValue
Genbank descriptionC32004C10EF DevOvary1 Citrus clementina cDNA clone C32004C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876399 ID=FC876399; Name=FC876399; organism=Citrus clementina; type=EST; length=713bp
GGCGTAGTTAAGAAGCACTTGAAAGAGCACGGAGAGCTTCTCATTTTACT
GCGGCCACGAAATAGAAAAACGAAATTTTAAATAAAGAAAAAAGAAAAAA
ACACACGAACAGCAGCAATGGCGGAACCAAAAACCAAATACGACCGCCAG
CTCAGGATCTGGGGTGAGCAAGGGCAAGCAGCTCTTGAAAAGGCAAGTGT
ATGCTTGCTCAACTGTGGTCCTACAGGTTCCGAGACTTTGAAAAATCTGG
TTCTTGGCGGGATTGGAAGCATTACAGTAATTGATGGGTCTAAAGTTGAA
GTGGGTGACCTTGGAAACAATTTTATGTTGGATGAGTCATGTGTTGGGCA
ATCAAAAGCCAAGTCTGTGTGTGCATTTCTTCAAGAGCTCAACGATGCTG
TTAAAGCCAAGTTTATTGAGGAGTATCCTGAGGCACTGATTGAAATGAAC
CCTCCCTTCTTCTCTCAGTTTACTTTGGTTGTGGCCACACAGCTGGGAGA
AGAAAAAATGATAAAGCTTGATAGAATCTGTAGAGAGGCAAATGTGATGT
TGATTTTTGCTCGCTCCTATGGCCTCACTGGGTTTGTTCGAATCAGTGTG
AAGGAACATACAGTGGTTGAGTCAAAGCCTGATCATTTTCTGGATGACCT
TCGATTAAATACCCATGGCCTGAGCTAANGAATTTGCAGAACATTCGATT
TGATGTCCTGATC
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