FC876405

Overview
NameFC876405
Unique NameFC876405
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length722
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10228 contig Ccv1_Contig10228:43..764. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876405 vs. ExPASy Swiss-Prot
Match: PSBO_SOLTU (Oxygen-evolving enhancer protein 1, chloroplastic OS=Solanum tuberosum GN=PSBO PE=2 SV=1)

HSP 1 Score: 346.28 bits (887), Expect = 9.850e-95
Identity = 177/213 (83.10%), Postives = 187/213 (87.79%), Query Frame = 3
Query:   63 MAASLQAAATLMQPTKVGVVPAXXXXXXXXXXXXVSKAFGVDSAGARISCSLNNDLKDLAQKCVDATKIAGFALATSALVVSGASAEGVPKRLTYDEIQSKTYMEVKGTGTANQCPTIDGGVDSFAFKPGKYQAKKFCLEPTSFTVKAEGVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLAGGERVPFL 701
            MAASLQAAATLMQPTKVG V A            VSKAFG++ + +R+SCSL  DLKD AQKC DA KIAGFALATSALVVSGA+AEGVPKRLT+DEIQSKTYMEVKGTGTANQCPTIDGGVDSFAFKPGKY AKKFCLEPTSFTVKAEGV+KN+ PDFQ TKLMTRLTYTLDEIEGPFEVSPDGT+KF EKDGIDYAAVTVQL GGERVPFL
Sbjct:    1 MAASLQAAATLMQPTKVGGVSARNNLQLRSSQS-VSKAFGLEPSASRLSCSLQTDLKDFAQKCTDAAKIAGFALATSALVVSGANAEGVPKRLTFDEIQSKTYMEVKGTGTANQCPTIDGGVDSFAFKPGKYNAKKFCLEPTSFTVKAEGVSKNSAPDFQKTKLMTRLTYTLDEIEGPFEVSPDGTVKFEEKDGIDYAAVTVQLPGGERVPFL 212          
BLAST of FC876405 vs. ExPASy Swiss-Prot
Match: PSBO_TOBAC (Oxygen-evolving enhancer protein 1, chloroplastic OS=Nicotiana tabacum GN=PSBO PE=2 SV=1)

HSP 1 Score: 345.895 bits (886), Expect = 1.286e-94
Identity = 178/213 (83.57%), Postives = 186/213 (87.32%), Query Frame = 3
Query:   63 MAASLQAAATLMQPTKVGVVPAXXXXXXXXXXXXVSKAFGVDSAGARISCSLNNDLKDLAQKCVDATKIAGFALATSALVVSGASAEGVPKRLTYDEIQSKTYMEVKGTGTANQCPTIDGGVDSFAFKPGKYQAKKFCLEPTSFTVKAEGVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLAGGERVPFL 701
            MAASLQAAATLMQPTKVGV PA            VSKAFGV+ A AR++CSL  +LKDLAQK  DA K+AGFALATSALVVSGA+AEGVPKRLT+DEIQSKTYMEVKGTGTANQCPTIDGGV SFAFKPGKY AKKFCLEPTSFTVKAE VNKNAPPDFQ TKLMTRLTYTLDEIEGPFEVS DGT+KF EKDGIDYAAVTVQL GGERVPFL
Sbjct:    1 MAASLQAAATLMQPTKVGVAPARNNLQLRSAQS-VSKAFGVEPAAARLTCSLQTELKDLAQKFTDAAKVAGFALATSALVVSGANAEGVPKRLTFDEIQSKTYMEVKGTGTANQCPTIDGGVASFAFKPGKYNAKKFCLEPTSFTVKAESVNKNAPPDFQKTKLMTRLTYTLDEIEGPFEVSSDGTVKFEEKDGIDYAAVTVQLPGGERVPFL 212          
BLAST of FC876405 vs. ExPASy Swiss-Prot
Match: PSBO_SOLLC (Oxygen-evolving enhancer protein 1, chloroplastic OS=Solanum lycopersicum GN=PSBO PE=2 SV=2)

HSP 1 Score: 339.347 bits (869), Expect = 1.204e-92
Identity = 173/213 (81.22%), Postives = 184/213 (86.38%), Query Frame = 3
Query:   63 MAASLQAAATLMQPTKVGVVPAXXXXXXXXXXXXVSKAFGVDSAGARISCSLNNDLKDLAQKCVDATKIAGFALATSALVVSGASAEGVPKRLTYDEIQSKTYMEVKGTGTANQCPTIDGGVDSFAFKPGKYQAKKFCLEPTSFTVKAEGVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLAGGERVPFL 701
            MAASLQAAATLMQPTKVGV               VSKAFGV+    R++CSL  ++K+LAQKC DA KIAGFALATSALVVSGA+AEGVPKRLTYDEIQSKTYMEVKGTGTANQCPTI+GGV SFAFKPGKY AKKFCLEPTSFTVKAEGV+KN+ PDFQ TKLMTRLTYTLDEIEGPFEVSPDGT+KF EKDGIDYAAVTVQL GGERVPFL
Sbjct:    1 MAASLQAAATLMQPTKVGV----RNNLQLRSAQSVSKAFGVEQGSGRLTCSLQTEIKELAQKCTDAAKIAGFALATSALVVSGANAEGVPKRLTYDEIQSKTYMEVKGTGTANQCPTIEGGVGSFAFKPGKYTAKKFCLEPTSFTVKAEGVSKNSAPDFQKTKLMTRLTYTLDEIEGPFEVSPDGTVKFEEKDGIDYAAVTVQLPGGERVPFL 209          
BLAST of FC876405 vs. ExPASy Swiss-Prot
Match: PSBO_PEA (Oxygen-evolving enhancer protein 1, chloroplastic OS=Pisum sativum GN=PSBO PE=2 SV=1)

HSP 1 Score: 323.939 bits (829), Expect = 5.235e-88
Identity = 165/213 (77.46%), Postives = 181/213 (84.98%), Query Frame = 3
Query:   63 MAASLQAAATLMQPTKVGVVPAXXXXXXXXXXXXVSKAFGVDSAGARISCSLNNDLKDLAQKCVDATKIAGFALATSALVVSGASAEGVPKRLTYDEIQSKTYMEVKGTGTANQCPTIDGGVDSFAFKPGKYQAKKFCLEPTSFTVKAEGVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLAGGERVPFL 701
            MAASLQAAATLMQPTK+                 VSKAFG++  GA+++CSL +D K+LA KCV+A+KIAGFALATSALVVSGASAEG PKRLT+DEIQSKTY+EVKGTGTANQCPTIDGGVDSF+FKPGKY AKK CLEPTSFTVK+EGV KN P  FQNTKLMTRLTYTLDEIEGPFEVS DG++KF EKDGIDYAAVTVQL GGERVPFL
Sbjct:    1 MAASLQAAATLMQPTKL-----RSNTLQLKSNQSVSKAFGLEHYGAKVTCSLQSDFKELAHKCVEASKIAGFALATSALVVSGASAEGAPKRLTFDEIQSKTYLEVKGTGTANQCPTIDGGVDSFSFKPGKYNAKKLCLEPTSFTVKSEGVTKNTPLAFQNTKLMTRLTYTLDEIEGPFEVSADGSVKFEEKDGIDYAAVTVQLPGGERVPFL 208          
BLAST of FC876405 vs. ExPASy Swiss-Prot
Match: PSBO2_ARATH (Oxygen-evolving enhancer protein 1-2, chloroplastic OS=Arabidopsis thaliana GN=PSBO2 PE=1 SV=1)

HSP 1 Score: 317.775 bits (813), Expect = 3.752e-86
Identity = 159/213 (74.65%), Postives = 177/213 (83.10%), Query Frame = 3
Query:   63 MAASLQAAATLMQPTKVGVVPAXXXXXXXXXXXXVSKAFGVDSAGARISCSLNNDLKDLAQKCVDATKIAGFALATSALVVSGASAEGVPKRLTYDEIQSKTYMEVKGTGTANQCPTIDGGVDSFAFKPGKYQAKKFCLEPTSFTVKAEGVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLAGGERVPFL 701
            MA SLQAAAT +QP K+   P+            V K+FG+DS+ AR++CSL++DLKD A KC DA KIAGFALATSALVVSGA AEG PKRLTYDEIQSKTYMEVKGTGTANQCPTIDGG ++F+FK GKY  KKFC EPTSFTVKA+ V+KNAPPDFQNTKLMTRLTYTLDEIEGPFEV  DG++KF E+DGIDYAAVTVQL GGERVPFL
Sbjct:    1 MATSLQAAATFLQPAKIAASPSRNVHLRSNQT--VGKSFGLDSSQARLTCSLHSDLKDFAGKCSDAAKIAGFALATSALVVSGAGAEGAPKRLTYDEIQSKTYMEVKGTGTANQCPTIDGGSETFSFKAGKYTGKKFCFEPTSFTVKADSVSKNAPPDFQNTKLMTRLTYTLDEIEGPFEVGSDGSVKFKEEDGIDYAAVTVQLPGGERVPFL 211          
BLAST of FC876405 vs. ExPASy Swiss-Prot
Match: PSBO_FRIAG (Oxygen-evolving enhancer protein 1, chloroplastic OS=Fritillaria agrestis GN=PSBO PE=2 SV=1)

HSP 1 Score: 316.235 bits (809), Expect = 1.092e-85
Identity = 162/214 (75.70%), Postives = 184/214 (85.98%), Query Frame = 3
Query:   63 MAASLQAAATLMQPTKVGVVPAXXXXXXXXXXXXVSKAFGVDSAGA-RISCSLNNDLKDLAQKCVDATKIAGFALATSALVVSGASAEGVPKRLTYDEIQSKTYMEVKGTGTANQCPTIDGGVDSFAFKPGKYQAKKFCLEPTSFTVKAEGVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLAGGERVPFL 701
            MA+SLQAAATL+ P KVG  PA            +SKAFG D++ A R++CS+N+DL+D+AQKC DA K+AGFALATSALV+SGASAEGVPKRLT+DEIQSKTYMEVKG+GTANQCPTI+GG +SF +K GKY  KK CLEPTSFTVKAEG+NKNAPP+FQ TKLMTRLTYTLDEIEGPFEV+PDGT+KF EKDGIDYAAVTVQL GGERVPFL
Sbjct:    1 MASSLQAAATLI-PAKVGA-PARTHLRSNSH---LSKAFGFDNSTAGRLTCSINSDLRDIAQKCTDAAKLAGFALATSALVISGASAEGVPKRLTFDEIQSKTYMEVKGSGTANQCPTIEGGTESFGYKTGKYTLKKLCLEPTSFTVKAEGINKNAPPEFQKTKLMTRLTYTLDEIEGPFEVAPDGTVKFEEKDGIDYAAVTVQLPGGERVPFL 209          
BLAST of FC876405 vs. ExPASy Swiss-Prot
Match: PSBO_SPIOL (Oxygen-evolving enhancer protein 1, chloroplastic OS=Spinacia oleracea GN=PSBO PE=1 SV=1)

HSP 1 Score: 312.768 bits (800), Expect = 1.207e-84
Identity = 163/215 (75.81%), Postives = 179/215 (83.26%), Query Frame = 3
Query:   63 MAASLQAAATLMQPTKVGVVPAXXXXXXXXXXXXVSKAFGVDSA--GARISCSLNNDLKDLAQKCVDATKIAGFALATSALVVSGASAEGVPKRLTYDEIQSKTYMEVKGTGTANQCPTIDGGVDSFAFKPGKYQAKKFCLEPTSFTVKAEGVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLAGGERVPFL 701
            MAASLQA+ T +QPTKV    A            V KAFGV+SA  G R+S SL +DLK+LA KCVDATK+AG ALATSAL+ SGA+AEG  KRLTYDEIQSKTY+EVKGTGTANQCPT++GGVDSFAFKPGKY AKKFCLEPT F VKAEG++KN+ PDFQNTKLMTRLTYTLDEIEGPFEVS DGT+KF EKDGIDYAAVTVQL GGERVPFL
Sbjct:    1 MAASLQASTTFLQPTKV----ASRNTLQLRSTQNVCKAFGVESASSGGRLSLSLQSDLKELANKCVDATKLAGLALATSALIASGANAEG-GKRLTYDEIQSKTYLEVKGTGTANQCPTVEGGVDSFAFKPGKYTAKKFCLEPTKFAVKAEGISKNSGPDFQNTKLMTRLTYTLDEIEGPFEVSSDGTVKFEEKDGIDYAAVTVQLPGGERVPFL 210          
BLAST of FC876405 vs. ExPASy Swiss-Prot
Match: PSBO1_ARATH (Oxygen-evolving enhancer protein 1-1, chloroplastic OS=Arabidopsis thaliana GN=PSBO1 PE=1 SV=2)

HSP 1 Score: 308.916 bits (790), Expect = 1.743e-83
Identity = 152/213 (71.36%), Postives = 174/213 (81.69%), Query Frame = 3
Query:   63 MAASLQAAATLMQPTKVGVVPAXXXXXXXXXXXXVSKAFGVDSAGARISCSLNNDLKDLAQKCVDATKIAGFALATSALVVSGASAEGVPKRLTYDEIQSKTYMEVKGTGTANQCPTIDGGVDSFAFKPGKYQAKKFCLEPTSFTVKAEGVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLAGGERVPFL 701
            MAASLQ+ AT +Q  K+   P+            V K+FG++++ AR++CS  +D KD   KC DA KIAGFALATSALVVSGASAEG PKRLTYDEIQSKTYMEVKGTGTANQCPTIDGG ++F+FKPGKY  KKFC EPTSFTVKA+ V+KNAPP+FQNTKLMTRLTYTLDEIEGPFEV+ DG++ F E+DGIDYAAVTVQL GGERVPFL
Sbjct:    1 MAASLQSTATFLQSAKIATAPSRGSSHLRSTQA-VGKSFGLETSSARLTCSFQSDFKDFTGKCSDAVKIAGFALATSALVVSGASAEGAPKRLTYDEIQSKTYMEVKGTGTANQCPTIDGGSETFSFKPGKYAGKKFCFEPTSFTVKADSVSKNAPPEFQNTKLMTRLTYTLDEIEGPFEVASDGSVNFKEEDGIDYAAVTVQLPGGERVPFL 212          
BLAST of FC876405 vs. ExPASy Swiss-Prot
Match: PSBO_WHEAT (Oxygen-evolving enhancer protein 1, chloroplastic OS=Triticum aestivum GN=PSBO PE=2 SV=1)

HSP 1 Score: 298.901 bits (764), Expect = 1.803e-80
Identity = 156/213 (73.24%), Postives = 174/213 (81.69%), Query Frame = 3
Query:   63 MAASLQAAATLMQPTKVGVVPAXXXXXXXXXXXXVSKAFGVDSAGARISCSLNNDLKDLAQKCVDATKIAGFALATSALVVSGASAEGVPKRLTYDEIQSKTYMEVKGTGTANQCPTIDGGVDSFAFKPGKYQAKKFCLEPTSFTVKAEGVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLAGGERVPFL 701
            MAASLQAAAT+M P K+G                V++AFGVD AGARI+CSL +D++++A KC DA K+AGFALATSAL+VSGA+AEG PKRLT+DEIQSKTYMEVKGTGTANQCPTIDGGVDSF FK GKY+ KKFCLEPTSFTVKAEG+ KN PP FQ TKLMTRLTYTLDE+EGP EV    T+KF EKDGIDYAAVTVQL GGERV FL
Sbjct:    1 MAASLQAAATVM-PAKIG-----GRASSARPSSHVARAFGVD-AGARITCSLQSDIREVASKCADAAKMAGFALATSALLVSGATAEGAPKRLTFDEIQSKTYMEVKGTGTANQCPTIDGGVDSFPFKAGKYEMKKFCLEPTSFTVKAEGIQKNEPPRFQKTKLMTRLTYTLDEMEGPLEVRRRRTLKFEEKDGIDYAAVTVQLPGGERVAFL 206          
BLAST of FC876405 vs. ExPASy Swiss-Prot
Match: PSBO_VOLCA (Oxygen-evolving enhancer protein 1, chloroplastic OS=Volvox carteri GN=PSBO PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.036e-35
Identity = 76/143 (53.15%), Postives = 93/143 (65.03%), Query Frame = 3
Query:  276 FALATSALVVSGASAEGVPKRLTYDEIQSKTYMEVKGTGTANQCPTID-GGVDSFAFKPGKYQAKKFCLEPTSFTVKAEGVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLAGGERVPFL 701
            F  A +A+V + A   G    LTYDE+Q  TY++VKGTG AN CP ++ G  D      G Y+ + FC+EPTSFTVK E V K    +F  TKLMTRLTYTLD + G  +V  DG+ +  E+DGIDYAA TVQL GGERV FL
Sbjct:   32 FGQAAAAVVAASALVAGSANALTYDELQGLTYLQVKGTGIANTCPVLEKGSTDLSELSAGTYKLENFCIEPTSFTVKEESVFKGGETEFVKTKLMTRLTYTLDAMSGTLKVGSDGSAELKEEDGIDYAATTVQLPGGERVAFL 174          
The following BLAST results are available for this feature:
BLAST of FC876405 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
PSBO_SOLTU9.850e-9583.10Oxygen-evolving enhancer protein 1, chloroplastic ... [more]
PSBO_TOBAC1.286e-9483.57Oxygen-evolving enhancer protein 1, chloroplastic ... [more]
PSBO_SOLLC1.204e-9281.22Oxygen-evolving enhancer protein 1, chloroplastic ... [more]
PSBO_PEA5.235e-8877.46Oxygen-evolving enhancer protein 1, chloroplastic ... [more]
PSBO2_ARATH3.752e-8674.65Oxygen-evolving enhancer protein 1-2, chloroplasti... [more]
PSBO_FRIAG1.092e-8575.70Oxygen-evolving enhancer protein 1, chloroplastic ... [more]
PSBO_SPIOL1.207e-8475.81Oxygen-evolving enhancer protein 1, chloroplastic ... [more]
PSBO1_ARATH1.743e-8371.36Oxygen-evolving enhancer protein 1-1, chloroplasti... [more]
PSBO_WHEAT1.803e-8073.24Oxygen-evolving enhancer protein 1, chloroplastic ... [more]
PSBO_VOLCA1.036e-3553.15Oxygen-evolving enhancer protein 1, chloroplastic ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32004D04EF DevOvary1 Citrus clementina cDNA clone C32004D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876405 ID=FC876405; Name=FC876405; organism=Citrus clementina; type=EST; length=722bp
GGGTTTGTTTCTTAGAAGATAAAGGGATACTAGCAAGTAACCCACAAGTG
GTAGGGAGCAAGATGGCAGCCTCGTTACAAGCCGCAGCTACACTGATGCA
ACCCACCAAGGTGGGTGTGGTACCCGCTCGCAGCAGCAGCCTGCAGCTGA
GGTCTTCACAGAGCGTTTCGAAGGCTTTTGGTGTCGACTCAGCTGGTGCT
AGGATCTCTTGCTCTTTGAATAATGACTTGAAGGATTTGGCTCAGAAATG
TGTTGATGCTACCAAGATCGCTGGCTTTGCCCTCGCCACTTCTGCTCTCG
TCGTTTCGGGAGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTATGAT
GAAATCCAGAGCAAGACATACATGGAAGTGAAGGGAACCGGAACTGCTAA
CCAGTGCCCAACCATTGATGGCGGAGTTGACTCTTTTGCCTTCAAACCTG
GCAAATACCAGGCTAAGAAGTTCTGCCTAGAACCAACTTCCTTCACTGTC
AAGGCTGAGGGTGTCAACAAGAATGCCCCACCAGATTTCCAGAACACCAA
GCTCATGACCCGCCTTACCTACACCCTTGACGAGATTGAGGGACCTTTTG
AAGTGTCCCCCGATGGCACCATTAAGTTTGTGGAGAAGGATGGAATTGAC
TATGCTGCTGTGACAGTTCAGCTGGCTGGAGGCGAGCGTGTGCCCTTCCT
TTCACATCAAACATTGGTAGCA
back to top