FC876415

Overview
NameFC876415
Unique NameFC876415
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length683
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10355 contig Ccv1_Contig10355:1..683. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876415 vs. ExPASy Swiss-Prot
Match: CHL1_ARATH (Nitrate/chlorate transporter OS=Arabidopsis thaliana GN=CHL1 PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.035e-26
Identity = 70/203 (34.48%), Postives = 106/203 (52.22%), Query Frame = 2
Query:  107 DYEDWRRRKADSNKHGGARAASLACVVEALENMVFLSNAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFIXXXXXXXXXXXXXXXQAQYSRLQP--------AMNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHS---NRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRG 682
            D  D++ R AD +K GG  +A++   +EA+E +  L   +N V Y   +MH   A +A  V NF+GTSF+L + GGFI+D+FL R+ T                       L+P        +   + S  Q  +LY  LY  A G GGVKA++   G+DQ D +    R  ++ FFN FFF +  G L+A TV+V+++++ G
Sbjct:   14 DAWDFQGRPADRSKTGGWASAAMILCIEAVERLTTLGIGVNLVTYLTGTMHLGNATAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFAAIQATGVSILTLSTIIPGLRPPRCNPTTSSHCEQASGIQLTVLYLALYLTALGTGGVKASVSGFGSDQFDETEPKERSKMTYFFNRFFFCINVGSLLAVTVLVYVQDDVG 216          
BLAST of FC876415 vs. ExPASy Swiss-Prot
Match: PTR1_ARATH (Peptide transporter PTR1 OS=Arabidopsis thaliana GN=PTR1 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.659e-22
Identity = 61/196 (31.12%), Postives = 94/196 (47.96%), Query Frame = 2
Query:  116 DWRRRKADSNKHGGARAASLACVVEALENMVFLSNAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFIXXXXXXXXXXXXXXXQAQYSRLQP----AMNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRR---LISAFFNWFFFSLCAGGLVAATVMVWIEENRG 682
            D  +  A+  K G  +A       E  E + +     N V Y    ++   A +A  V N+ GT ++  + G FI+D++L R+ T                  A    L+P    A    P+ +Q A+ +  LY +A G GG+K  + + GADQ D ++       S+FFNWF+FS+  G L+AATV+VWI+ N G
Sbjct:   14 DIHKNPANKEKTGNWKACRFILGNECCERLAYYGMGTNLVNYLESRLNQGNATAANNVTNWSGTCYITPLIGAFIADAYLGRYWTIATFVFIYVSGMTLLTLSASVPGLKPGNCNADTCHPNSSQTAVFFVALYMIALGTGGIKPCVSSFGADQFDENDENEKIKKSSFFNWFYFSINVGALIAATVLVWIQMNVG 209          
BLAST of FC876415 vs. ExPASy Swiss-Prot
Match: PTR5_ARATH (Peptide transporter PTR5 OS=Arabidopsis thaliana GN=PTR5 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.320e-21
Identity = 57/195 (29.23%), Postives = 94/195 (48.21%), Query Frame = 2
Query:  116 DWRRRKADSNKHGGARAASLACVVEALENMVFLSNAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFIXXXXXXXXXXXXXXXQAQYSRLQPAMNRRPSHT---QAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRR---LISAFFNWFFFSLCAGGLVAATVMVWIEENRG 682
            D  ++ A+ NK G  +A       E  E + +   + N + Y  K M+     ++  V+N+ GT +   + G FI+D++L R+ T                  A    L P  +    H    Q AI +  LY +A G GG+K  + + GADQ D ++ +     S+FFNWF+F +  G ++A++V+VWI+ N G
Sbjct:   15 DIHKKPANKNKTGTWKACRFILGTECCERLAYYGMSTNLINYLEKQMNMENVSASKSVSNWSGTCYATPLIGAFIADAYLGRYWTIASFVVIYIAGMTLLTISASVPGLTPTCSGETCHATAGQTAITFIALYLIALGTGGIKPCVSSFGADQFDDTDEKEKESKSSFFNWFYFVINVGAMIASSVLVWIQMNVG 209          
BLAST of FC876415 vs. ExPASy Swiss-Prot
Match: PTR2_ARATH (Peptide transporter PTR2 OS=Arabidopsis thaliana GN=PTR2 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.457e-20
Identity = 58/187 (31.02%), Postives = 92/187 (49.20%), Query Frame = 2
Query:  146 KHGGARAASLACVVEALENMVFLSNAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFIXXXXXXXXXXXXXXXQAQYSRLQPAM---NRRPSHTQA--AILYTGLYAMATGVGGVKAALPAHGADQLDHSNRR---LISAFFNWFFFSLCAGGLVAATVMVWIEENRG 682
            K G  +A       E  E + +   A N + Y    +H     +A  V  + GT +L  + G  ++D++  R+ T                  A    L+PA    +  PS T A  A+ + GLY +A G GG+K  + + GADQ D ++ R     ++FFNWF+FS+  G LV+++++VWI+ENRG
Sbjct:   41 KTGNWKACPFILGNECCERLAYYGIAGNLITYLTTKLHQGNVSAATNVTTWQGTCYLTPLIGAVLADAYWGRYWTIACFSGIYFIGMSALTLSASVPALKPAECIGDFCPSATPAQYAMFFGGLYLIALGTGGIKPCVSSFGADQFDDTDSRERVRKASFFNWFYFSINIGALVSSSLLVWIQENRG 227          
BLAST of FC876415 vs. ExPASy Swiss-Prot
Match: PTR3B_ARATH (Peptide transporter PTR3-B OS=Arabidopsis thaliana GN=PTR3-B PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.042e-18
Identity = 56/200 (28.00%), Postives = 90/200 (45.00%), Query Frame = 2
Query:  116 DWRRRKADSNKHGGARAASLACVVEALENMVFLSNAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFIXXXXXXXXXXXXXXXQAQYSRLQPAM--------NRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDH---SNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRG 682
            D R  +   ++ G  +A S   V E  E M +   + N V Y    +H    +S+  V N++GTS+L  I G +++D+   R+ TF+                     L+P            + S  Q A+ +  LY +A G GG K  +   GADQ D     ++    +FFNW+ FS+  G   A TV+V++++N G
Sbjct:   17 DLRGNRVRRSQTGRWKACSFVVVYEVFERMAYYGISSNLVIYMTTKLHQGTVKSSNNVTNWVGTSWLTPILGAYVADAHFGRYITFVISSAIYLLGMALLTLSVSLPGLKPPKCSTANVENCEKASVIQLAVFFGALYTLAIGTGGTKPNISTIGADQFDEFDPKDKIHKHSFFNWWMFSIFFGTFFATTVLVYVQDNVG 216          
BLAST of FC876415 vs. ExPASy Swiss-Prot
Match: PTR3A_ARATH (Peptide transporter PTR3-A OS=Arabidopsis thaliana GN=PTR3-A PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.393e-17
Identity = 54/188 (28.72%), Postives = 84/188 (44.68%), Query Frame = 2
Query:  152 GGARAASLACVVEALENMVFLSNAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFIXXXXXXXXXXXXXXXQAQYSRLQP--------AMNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQ---LDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRG 682
            G  +A S   V E  E M +   + N   Y    +H    +S+  V N++GTS+L  I G ++ D+ L R+ TF+                     ++P            + S  Q A+ +  LY +A G GG K  +   GADQ    D   +    +FFNW+ FS+  G L A TV+V++++N G
Sbjct:   29 GRWKACSFVVVYEVFERMAYYGISSNLFIYMTTKLHQGTVKSSNNVTNWVGTSWLTPILGAYVGDALLGRYITFVISCAIYFSGMMVLTLSVTIPGIKPPECSTTNVENCEKASVLQLAVFFGALYTLAIGTGGTKPNISTIGADQFDVFDPKEKTQKLSFFNWWMFSIFFGTLFANTVLVYVQDNVG 216          
BLAST of FC876415 vs. ExPASy Swiss-Prot
Match: PTR2X_ARATH (Probable peptide transporter At1g52190 OS=Arabidopsis thaliana GN=At1g52190 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.255e-12
Identity = 49/190 (25.79%), Postives = 83/190 (43.68%), Query Frame = 2
Query:  152 GGARAASLACVVEALENMVFLSNAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFIXXXXXXXXXXXXXXXQAQYSRLQPAM---NRRPSH------TQAAILYTGLYAMATGVGGVKAALPAHGADQLDH----SNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRG 682
            GG          EA E +       N + Y ++   +  A+   ++  +   S    + G F+SDS+L RF T                  A   +++P+        SH      +Q A+LY+    ++ G GG++    A GADQLD+     N R++ +FF W++ S     L+A T +V+I+E+ G
Sbjct:   23 GGIITMPFIIANEAFEKVASYGLLPNMIMYLIRDYRFGVAKGTNVLFMWSAASNFTPLLGAFLSDSYLGRFLTISIASLSSFLGMVLLWLTAMLPQVKPSPCDPTAAGSHCGSSTASQLALLYSAFALISIGSGGIRPCSLAFGADQLDNKENPKNERVLESFFGWYYASSAVAVLIAFTGIVYIQEHLG 212          
The following BLAST results are available for this feature:
BLAST of FC876415 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
CHL1_ARATH3.035e-2634.48Nitrate/chlorate transporter OS=Arabidopsis thalia... [more]
PTR1_ARATH2.659e-2231.12Peptide transporter PTR1 OS=Arabidopsis thaliana G... [more]
PTR5_ARATH1.320e-2129.23Peptide transporter PTR5 OS=Arabidopsis thaliana G... [more]
PTR2_ARATH9.457e-2031.02Peptide transporter PTR2 OS=Arabidopsis thaliana G... [more]
PTR3B_ARATH3.042e-1828.00Peptide transporter PTR3-B OS=Arabidopsis thaliana... [more]
PTR3A_ARATH4.393e-1728.72Peptide transporter PTR3-A OS=Arabidopsis thaliana... [more]
PTR2X_ARATH4.255e-1225.79Probable peptide transporter At1g52190 OS=Arabidop... [more]
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Properties
Property NameValue
Genbank descriptionC32004E06EF DevOvary1 Citrus clementina cDNA clone C32004E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876415 ID=FC876415; Name=FC876415; organism=Citrus clementina; type=EST; length=683bp
TGTCTCTTTCATTTCTCAGGCTTGTTTCAGTGTTTCTTAGAGTAACCTCC
ACTTCTGCTGCTAGCTCATGGATGCGGAGATTCATGCAAGCATTGATCAA
AGTGGAGATTATGAGGACTGGAGAAGAAGAAAGGCGGATTCTAACAAGCA
CGGGGGTGCCCGAGCTGCCAGCTTAGCATGCGTTGTAGAGGCATTGGAGA
ACATGGTTTTCTTATCGAATGCAATCAACTTTGTTGCATACTTCCTCAAA
TCCATGCACTATCCAGCTGCTGAATCTGCAATCATGGTGAACAATTTCAT
GGGAACATCTTTTTTGCTTACGATATTTGGAGGCTTCATCAGCGACTCTT
TCCTCACAAGGTTTACAACATTCATCTTGTTCTGTACCATAGAGCTACTG
GGGCTGATACTGCTGACAATTCAAGCTCAATACAGTCGGCTACAACCTGC
GATGAATAGAAGGCCTTCTCACACTCAAGCTGCAATTTTGTACACGGGGC
TTTACGCGATGGCCACAGGCGTTGGTGGCGTCAAGGCAGCCTTGCCTGCG
CATGGCGCTGATCAGCTTGATCACAGCAACCGGAGACTAATCTCTGCTTT
CTTCAATTGGTTCTTCTTTTCTTTATGTGCAGGTGGCCTCGTTGCTGCTA
CTGTTATGGTTTGGATTGAAGAGAACAGAGGTG
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