FC876424

Overview
NameFC876424
Unique NameFC876424
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length673
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10357 contig Ccv1_Contig10357:1..673. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876424 vs. ExPASy Swiss-Prot
Match: KIFC3_HUMAN (Kinesin-like protein KIFC3 OS=Homo sapiens GN=KIFC3 PE=1 SV=3)

HSP 1 Score: 186.422 bits (472), Expect = 1.144e-46
Identity = 101/188 (53.72%), Postives = 131/188 (69.68%), Query Frame = 3
Query:    6 KKLEIKQAAEGGTQ-EVPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVTVKGENLINGQKTKSHLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDVISALASKSGHIPYRNSKLTHILQSSLGGDCKTLMFVQISPSSSDLGETPCSLNFASRVRGIESGPARKQSDI 566
            +KLEI+   +G  Q  VPGLTE QV   +++ ++ + G   R+   TN NE SSRSH LL VTV+G +   G +T   L LVDLAGSERVGK   +G RL+E+Q INKSLSALGDVI+AL S+ GH+P+RNSKLT++LQ SL GD KTLM VQ+SP   +  ET  SL FA RVR +E GP  +++++
Sbjct:  592 EKLEIRLCPDGSGQLYVPGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDCSTGLRTTGKLNLVDLAGSERVGKSGAEGSRLREAQHINKSLSALGDVIAALRSRQGHVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNTSETLYSLKFAERVRSVELGPGLRRAEL 779          
BLAST of FC876424 vs. ExPASy Swiss-Prot
Match: KIFC3_MOUSE (Kinesin-like protein KIFC3 OS=Mus musculus GN=Kifc3 PE=1 SV=4)

HSP 1 Score: 186.037 bits (471), Expect = 1.494e-46
Identity = 100/188 (53.19%), Postives = 131/188 (69.68%), Query Frame = 3
Query:    6 KKLEIKQAAEGGTQ-EVPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVTVKGENLINGQKTKSHLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDVISALASKSGHIPYRNSKLTHILQSSLGGDCKTLMFVQISPSSSDLGETPCSLNFASRVRGIESGPARKQSDI 566
            +KLEI+   +G  Q  VPGLTE QV   +++ ++ + G   R+   TN NE SSRSH LL VTV+G +   G +T   L LVDLAGSERVGK   +G RL+E+Q IN+SLSALGDVI+AL S+ GH+P+RNSKLT++LQ SL GD KTLM VQ+SP   +  ET  SL FA RVR +E GP  +++++
Sbjct:  590 EKLEIRLCPDGSGQLYVPGLTEFQVQSVDDINKVFEFGYNNRTTEFTNLNEHSSRSHALLIVTVRGVDCSTGLRTTGKLNLVDLAGSERVGKSGAEGNRLREAQHINRSLSALGDVIAALRSRQGHVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNTSETLYSLRFAERVRSVELGPGSRRTEL 777          
BLAST of FC876424 vs. ExPASy Swiss-Prot
Match: ATK4_ARATH (Kinesin-4 OS=Arabidopsis thaliana GN=ATK4 PE=1 SV=2)

HSP 1 Score: 183.726 bits (465), Expect = 7.413e-46
Identity = 104/201 (51.74%), Postives = 131/201 (65.17%), Query Frame = 3
Query:    6 KKLEIKQAAEGGTQEVPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVTVKGENLINGQKTKSHLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDVISALASKSGHIPYRNSKLTHILQSSLGGDCKTLMFVQISPSSSDLGETPCSLNFASRVRGIESGPARKQSDISELFKYKQMAEKLK 608
            K+LEI+  +  G   VP  +   V  T++V +L+  G   R+V ST  N+ SSRSH  + V V+G +L +G      + LVDLAGSERV K EV G+RLKE+Q INKSLSALGDVIS+L+ K+ H+PYRNSKLT +LQ SLGG  KTLMFV ISP    LGET  +L FA RV  +E G AR   D SE+ + K+    LK
Sbjct:  547 KRLEIRNNSHNGIN-VPEASLVPVSSTDDVIQLMDLGHMNRAVSSTAMNDRSSRSHSCVTVHVQGRDLTSGSILHGSMHLVDLAGSERVDKSEVTGDRLKEAQHINKSLSALGDVISSLSQKTSHVPYRNSKLTQLLQDSLGGSAKTLMFVHISPEPDTLGETISTLKFAERVGSVELGAARVNKDNSEVKELKEQIANLK 746          
BLAST of FC876424 vs. ExPASy Swiss-Prot
Match: ATK3_ARATH (Kinesin-3 OS=Arabidopsis thaliana GN=ATK3 PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 5.312e-44
Identity = 102/191 (53.40%), Postives = 124/191 (64.92%), Query Frame = 3
Query:    3 PKKLEIKQAAEGGTQEVPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVTVKGENLINGQKTKSHLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDVISALASKSGHIPYRNSKLTHILQSSLGGDCKTLMFVQISPSSSDLGETPCSLNFASRVRGIESGPARKQSDISEL 575
            P+K  IK  A G T  V  LT   V  + EV  LL   AR RSVG T  NE SSRSH +  + + G N    Q+ +  L L+DLAGSER+ K    G+RLKE+Q INKSLS+LGDVI ALA K  H+P+RNSKLT++LQ  LGGD KTLMFV I+P SS  GE+ CSL FA+RV   E G  R+Q++I  L
Sbjct:  558 PQKHAIKHDASGNTH-VAELTILDVKSSREVSFLLDHAARNRSVGKTQMNEQSSRSHFVFTLRISGVNESTEQQVQGVLNLIDLAGSERLSKSGSTGDRLKETQAINKSLSSLGDVIFALAKKEDHVPFRNSKLTYLLQPCLGGDAKTLMFVNIAPESSSTGESLCSLRFAARVNACEIGTPRRQTNIKPL 747          
BLAST of FC876424 vs. ExPASy Swiss-Prot
Match: KLPA_EMENI (Kinesin-like protein klpA OS=Emericella nidulans GN=klpA PE=2 SV=2)

HSP 1 Score: 172.94 bits (437), Expect = 1.308e-42
Identity = 97/192 (50.52%), Postives = 126/192 (65.62%), Query Frame = 3
Query:    6 KKLEIKQAAEGGTQEVPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVTVKGENLINGQKTKSHLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDVISAL--ASKSGHIPYRNSKLTHILQSSLGGDCKTLMFVQISPSSSDLGETPCSLNFASRVRGIESGPARKQSDISEL 575
            KKLEI+   + G   +   T  Q+   E V  LLK  A  RSV +T ANE SSRSH +  + + GEN I G++++  L LVDLAGSER+      G+RLKE+Q IN+SLS LGDVI+AL    K GHIPYRNSKLT++LQ SLGG+ KTLMFV +SP  + L ET  SL FA++V     G A+KQ+ + ++
Sbjct:  572 KKLEIRHDMQRGKTTITDATTVQLESPEMVESLLKRAAANRSVAATKANERSSRSHSIFILKLIGENYITGERSEGTLNLVDLAGSERLSHSGATGDRLKETQNINRSLSCLGDVIAALGQGKKDGHIPYRNSKLTYLLQFSLGGNSKTLMFVMVSPLQAHLSETLTSLKFATKVHNTHIGTAKKQTRVRDV 763          
BLAST of FC876424 vs. ExPASy Swiss-Prot
Match: KIF2_DICDI (Kinesin-related protein 2 OS=Dictyostelium discoideum GN=kif2 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 3.807e-42
Identity = 96/186 (51.61%), Postives = 124/186 (66.67%), Query Frame = 3
Query:    9 KLEIKQAAEGGTQEVPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVTVKGENLINGQKTKSHLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDVISALASKSGHIPYRNSKLTHILQSSLGGDCKTLMFVQISPSSSDLGETPCSLNFASRVRGIESGPARKQSDI 566
            K EIK   +     V  +T   V    +V+ELL    + RSV  T  NE SSRSH + ++ + G N  + ++T+  L L+DLAGSERV +  V+G++LKE+Q INKSLS+LGDVISALA+K  HIPYRNSKLT +LQ+S+GG+ KTLMFV ISP   DL E+  SL FA++V   E G ARKQ  I
Sbjct:  607 KYEIKHNPDTNVTTVTNMTVVPVTHPSQVYELLNLANKNRSVAKTLCNERSSRSHTVFQLKLIGYNQQSSERTQGLLNLIDLAGSERVSRSGVEGKQLKETQAINKSLSSLGDVISALANKEQHIPYRNSKLTFLLQNSIGGNSKTLMFVNISPELKDLQESTSSLRFAAKVNSCELGAARKQKII 792          
BLAST of FC876424 vs. ExPASy Swiss-Prot
Match: ATK2_ARATH (Kinesin-2 OS=Arabidopsis thaliana GN=ATK2 PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.447e-41
Identity = 97/184 (52.72%), Postives = 119/184 (64.67%), Query Frame = 3
Query:    3 PKKLEIKQAAEGGTQEVPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVTVKGENLINGQKTKSHLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDVISALASKSGHIPYRNSKLTHILQSSLGGDCKTLMFVQISPSSSDLGETPCSLNFASRVRGIESGPARK 554
            P+K  IK  A G T  V  LT   V  +++V  LL   AR RSVG T  NE SSRSH +  + + G N    Q+ +  L L+DLAGSER+ K    G+RLKE+Q INKSLS+LGDVI ALA K  H+P+RNSKLT++LQ  LGGD KTLMFV I+P  S  GE+ CSL FA+RV   E G A +
Sbjct:  549 PQKYAIKHDASGNTHVVE-LTVVDVRSSKQVSFLLDHAARNRSVGKTAMNEQSSRSHFVFTLKISGFNESTEQQVQGVLNLIDLAGSERLSKSGSTGDRLKETQAINKSLSSLGDVIFALAKKEDHVPFRNSKLTYLLQPCLGGDSKTLMFVNITPEPSSTGESLCSLRFAARVNACEIGTAHR 731          
BLAST of FC876424 vs. ExPASy Swiss-Prot
Match: KLP2_SCHPO (Kinesin-like protein 2 OS=Schizosaccharomyces pombe GN=klp2 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.563e-40
Identity = 96/185 (51.89%), Postives = 121/185 (65.41%), Query Frame = 3
Query:    6 KKLEIKQAAEGGTQEVPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVTVKGENLINGQKTKSHLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDVISALAS-KSG-HIPYRNSKLTHILQSSLGGDCKTLMFVQISPSSSDLGETPCSLNFASRVRGIESGPARK 554
            KKLEI    + G   +  +T   +   E+V  LL   ++ RSV +TNANE SSRSH +  + + G N   G+  +S L L+DLAGSER+   +  GERLKE+Q INKSLS LGDVI AL S K G +IPYRNSKLT++LQ SLGG+ KTLMFV ISP    + ET CSL FA++V   + G ARK
Sbjct:  630 KKLEIYHDTKAGRTTITNITSEPLDTPEQVTWLLDQASKNRSVAATNANEHSSRSHSVFMLHLNGSNSTTGETCRSTLNLIDLAGSERLSSSQSVGERLKETQAINKSLSCLGDVIHALGSGKEGTYIPYRNSKLTNLLQYSLGGNSKTLMFVNISPLKQHVPETLCSLRFATKVNNTQIGTARK 814          
BLAST of FC876424 vs. ExPASy Swiss-Prot
Match: ATK1_ARATH (Kinesin-1 OS=Arabidopsis thaliana GN=ATK1 PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.354e-39
Identity = 90/174 (51.72%), Postives = 112/174 (64.37%), Query Frame = 3
Query:   39 GTQEVPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVTVKGENLINGQKTKSHLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDVISALASKSGHIPYRNSKLTHILQSSLGGDCKTLMFVQISPSSSDLGETPCSLNFASRVRGIESGPARKQS 560
            G   V  LT   V    ++  LL+  A+ RSVG T  NE SSRSH +  + + G N    Q+ +  L L+DLAGSER+ K    G+RLKE+Q INKSLSAL DVI ALA K  H+P+RNSKLT++LQ  LGGD KTLMFV ISP  +  GE+ CSL FA+RV   E G  R+Q+
Sbjct:  608 GHTHVSDLTIFDVCSVGKISSLLQQAAQSRSVGKTQMNEQSSRSHFVFTMRISGVNESTEQQVQGVLNLIDLAGSERLSKSGATGDRLKETQAINKSLSALSDVIFALAKKEDHVPFRNSKLTYLLQPCLGGDSKTLMFVNISPDPTSAGESLCSLRFAARVNACEIGIPRRQT 781          
BLAST of FC876424 vs. ExPASy Swiss-Prot
Match: KIF5A_PONAB (Kinesin heavy chain isoform 5A OS=Pongo abelii GN=KIF5A PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.390e-36
Identity = 90/202 (44.55%), Postives = 124/202 (61.39%), Query Frame = 3
Query:   51 VPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVTVKGENLINGQKTKSHLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDVISALA-SKSGHIPYRNSKLTHILQSSLGGDCKTLMFVQISPSSSDLGETPCSLNFASRVRGIESGPARKQSDISELF--KYKQMAEKLKQDEKETKKLQDNL 647
            V G TE  V G EE+ +++  G   R V  TN NE SSRSH +  + +K EN+   QK    L+LVDLAGSE+V K   +G  L E++ INKSLSALG+VISALA     ++PYR+SK+T ILQ SLGG+C+T MF+  SPSS +  ET  +L F  R + I++  +      +E +  KY++  EK K  ++   KL+  L
Sbjct:  166 VKGCTERFVSGPEEILDVIDEGKSNRHVAVTNMNEHSSRSHSIFLINIKQENMETEQKLSGKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGTKSYVPYRDSKMTRILQDSLGGNCRTTMFICCSPSSYNDAETKSTLMFGQRAKTIKNTASVNLELTAEQWKKKYEKEKEKTKAQKETIAKLEAEL 367          
The following BLAST results are available for this feature:
BLAST of FC876424 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 195
Match NameE-valueIdentityDescription
KIFC3_HUMAN1.144e-4653.72Kinesin-like protein KIFC3 OS=Homo sapiens GN=KIFC... [more]
KIFC3_MOUSE1.494e-4653.19Kinesin-like protein KIFC3 OS=Mus musculus GN=Kifc... [more]
ATK4_ARATH7.413e-4651.74Kinesin-4 OS=Arabidopsis thaliana GN=ATK4 PE=1 SV=... [more]
ATK3_ARATH5.312e-4453.40Kinesin-3 OS=Arabidopsis thaliana GN=ATK3 PE=2 SV=... [more]
KLPA_EMENI1.308e-4250.52Kinesin-like protein klpA OS=Emericella nidulans G... [more]
KIF2_DICDI3.807e-4251.61Kinesin-related protein 2 OS=Dictyostelium discoid... [more]
ATK2_ARATH1.447e-4152.72Kinesin-2 OS=Arabidopsis thaliana GN=ATK2 PE=2 SV=... [more]
KLP2_SCHPO3.563e-4051.89Kinesin-like protein 2 OS=Schizosaccharomyces pomb... [more]
ATK1_ARATH1.354e-3951.72Kinesin-1 OS=Arabidopsis thaliana GN=ATK1 PE=2 SV=... [more]
KIF5A_PONAB2.390e-3644.55Kinesin heavy chain isoform 5A OS=Pongo abelii GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32004F03EF DevOvary1 Citrus clementina cDNA clone C32004F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876424 ID=FC876424; Name=FC876424; organism=Citrus clementina; type=EST; length=673bp
CTCCTAAGAAGTTGGAGATAAAGCAAGCAGCAGAAGGTGGTACCCAAGAA
GTGCCAGGACTCACTGAAGCTCAAGTATATGGTACAGAGGAAGTGTGGGA
GCTACTTAAGTCTGGAGCCAGAGTTAGATCTGTTGGATCCACCAATGCCA
ATGAGCTCAGTAGCCGGTCTCACTGCTTGTTGCGAGTAACTGTGAAGGGG
GAGAATCTGATAAATGGGCAGAAGACTAAGAGTCACCTCTGGCTGGTAGA
CTTGGCAGGCAGTGAACGTGTGGGGAAGATTGAAGTTGATGGTGAGAGGT
TGAAGGAATCTCAGTTTATAAATAAATCTCTCTCTGCACTTGGTGATGTT
ATATCTGCTCTGGCATCTAAATCAGGCCACATTCCGTACAGGAACTCGAA
GCTCACTCATATTTTGCAGAGCTCTCTAGGTGGAGATTGCAAGACTCTGA
TGTTTGTCCAGATCAGCCCAAGTTCTTCAGACCTTGGAGAGACCCCTTGT
TCACTGAATTTTGCCAGCCGAGTTCGGGGAATTGAAAGTGGTCCTGCTCG
GAAACAATCAGACATTTCTGAACTTTTTAAGTACAAGCAAATGGCAGAAA
AGTTAAAGCAGGATGAGAAGGAGACGAAGAAGTTGCAGGACAATTTGCAG
TCTGTACAATTAAGGCTCGCTGC
back to top