FC876426

Overview
NameFC876426
Unique NameFC876426
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length695
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10358 contig Ccv1_Contig10358:1..695. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876426 vs. ExPASy Swiss-Prot
Match: PP1_MEDVA (Serine/threonine-protein phosphatase PP1 OS=Medicago varia GN=PP1 PE=2 SV=1)

HSP 1 Score: 276.174 bits (705), Expect = 1.177e-73
Identity = 130/143 (90.91%), Postives = 140/143 (97.90%), Query Frame = 3
Query:  267 MDETVLDDIIRRLLDAKNGRTTKQVQLTEAEIRQLCAASKEIFLSQPNLLELEAPIKICGDVHGQFSDLLRLFEYGGYPPEANYLFLGDYVDRGKQSIETICLLLAYKVKYKENFFLLRGHHECASINRIYGFYDECKRRFNV 695
            MD+TVLDDII++L+ AKNGRTTKQV LTEA+IRQLC ++KEIFLSQPNLLELEAPIKICGDVHGQFSDLLRLFEYGGYPPEANYLFLGDYVDRGKQSIETICLLLAYK+KYKENFFLLRG+HECASINRIYGFYDECKRR+NV
Sbjct:    1 MDDTVLDDIIKKLVSAKNGRTTKQVHLTEADIRQLCTSAKEIFLSQPNLLELEAPIKICGDVHGQFSDLLRLFEYGGYPPEANYLFLGDYVDRGKQSIETICLLLAYKIKYKENFFLLRGNHECASINRIYGFYDECKRRYNV 143          
BLAST of FC876426 vs. ExPASy Swiss-Prot
Match: PP16_ARATH (Serine/threonine-protein phosphatase PP1 isozyme 6 OS=Arabidopsis thaliana GN=TOPP6 PE=2 SV=2)

HSP 1 Score: 266.929 bits (681), Expect = 7.142e-71
Identity = 127/143 (88.81%), Postives = 133/143 (93.01%), Query Frame = 3
Query:  267 MDETVLDDIIRRLLDAKNGRTTKQVQLTEAEIRQLCAASKEIFLSQPNLLELEAPIKICGDVHGQFSDLLRLFEYGGYPPEANYLFLGDYVDRGKQSIETICLLLAYKVKYKENFFLLRGHHECASINRIYGFYDECKRRFNV 695
            MDET+LDDIIRRLL   NGRT KQ Q+TE EIRQLC ASKE+FLSQPNLLELEAPIKICGDVHGQF DLLRLFEYGGYPP ANYLFLGDYVDRGKQSIETICLLLAYKVKYK NFFLLRG+HECASINR+YGFYDECKRR+NV
Sbjct:    1 MDETLLDDIIRRLLATNNGRTVKQAQITETEIRQLCLASKEVFLSQPNLLELEAPIKICGDVHGQFPDLLRLFEYGGYPPAANYLFLGDYVDRGKQSIETICLLLAYKVKYKFNFFLLRGNHECASINRVYGFYDECKRRYNV 143          
BLAST of FC876426 vs. ExPASy Swiss-Prot
Match: PP13_ARATH (Serine/threonine-protein phosphatase PP1 isozyme 3 OS=Arabidopsis thaliana GN=TOPP3 PE=2 SV=1)

HSP 1 Score: 262.692 bits (670), Expect = 1.347e-69
Identity = 120/143 (83.92%), Postives = 138/143 (96.50%), Query Frame = 3
Query:  267 MDETVLDDIIRRLLDAKNGRTTKQVQLTEAEIRQLCAASKEIFLSQPNLLELEAPIKICGDVHGQFSDLLRLFEYGGYPPEANYLFLGDYVDRGKQSIETICLLLAYKVKYKENFFLLRGHHECASINRIYGFYDECKRRFNV 695
            M+++V+DD+I+RLL AKNG+TTKQVQLTEAEI+ LC+ +K+IFL+QPNLLELEAPIKICGD HGQFSDLLRLFEYGGYPP ANYLFLGDYVDRGKQS+ETICLLLAYK+KYKENFFLLRG+HECASINRIYGFYDECK+R++V
Sbjct:    1 MEDSVVDDVIKRLLGAKNGKTTKQVQLTEAEIKHLCSTAKQIFLTQPNLLELEAPIKICGDTHGQFSDLLRLFEYGGYPPAANYLFLGDYVDRGKQSVETICLLLAYKIKYKENFFLLRGNHECASINRIYGFYDECKKRYSV 143          
BLAST of FC876426 vs. ExPASy Swiss-Prot
Match: PP1_ORYSJ (Serine/threonine-protein phosphatase PP1 OS=Oryza sativa subsp. japonica GN=Os03g0268000 PE=2 SV=2)

HSP 1 Score: 258.84 bits (660), Expect = 1.945e-68
Identity = 121/143 (84.62%), Postives = 133/143 (93.01%), Query Frame = 3
Query:  267 MDETVLDDIIRRLLDAKNGRTTKQVQLTEAEIRQLCAASKEIFLSQPNLLELEAPIKICGDVHGQFSDLLRLFEYGGYPPEANYLFLGDYVDRGKQSIETICLLLAYKVKYKENFFLLRGHHECASINRIYGFYDECKRRFNV 695
            MD  +LDDIIRRLL+ +  R  KQVQL+E+EIRQLC  S+EIFLSQPNLLELEAPIKICGD+HGQ+SDLLRLFEYGG+PPEANYLFLGDYVDRGKQS+ETICLLLAYK+KY ENFFLLRG+HECASINRIYGFYDECKRRFNV
Sbjct:   15 MDAVLLDDIIRRLLEVRTARPGKQVQLSESEIRQLCTVSREIFLSQPNLLELEAPIKICGDIHGQYSDLLRLFEYGGFPPEANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFNV 157          
BLAST of FC876426 vs. ExPASy Swiss-Prot
Match: PP12_TOBAC (Serine/threonine-protein phosphatase PP1 isozyme 2 OS=Nicotiana tabacum GN=NPP2 PE=2 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 7.391e-68
Identity = 120/143 (83.92%), Postives = 132/143 (92.31%), Query Frame = 3
Query:  267 MDETVLDDIIRRLLDAKNGRTTKQVQLTEAEIRQLCAASKEIFLSQPNLLELEAPIKICGDVHGQFSDLLRLFEYGGYPPEANYLFLGDYVDRGKQSIETICLLLAYKVKYKENFFLLRGHHECASINRIYGFYDECKRRFNV 695
            ++  VLDDII RLL+ +N RT +QVQL+EAEIR LC ASKEIFL QPNLLELEAPIKICGD+HGQ+ DLLRLFEYGG+PPEANYLFLGDYVDRGKQS+ETICLLLAYK+KY ENFFLLRG+HECASINRIYGFYDECKRRFNV
Sbjct:    8 IEPAVLDDIINRLLEFRNARTVRQVQLSEAEIRSLCTASKEIFLHQPNLLELEAPIKICGDIHGQYGDLLRLFEYGGFPPEANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFNV 150          
BLAST of FC876426 vs. ExPASy Swiss-Prot
Match: PP1_MAIZE (Serine/threonine-protein phosphatase PP1 OS=Zea mays GN=PP1 PE=2 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 6.257e-67
Identity = 118/143 (82.52%), Postives = 133/143 (93.01%), Query Frame = 3
Query:  267 MDETVLDDIIRRLLDAKNGRTTKQVQLTEAEIRQLCAASKEIFLSQPNLLELEAPIKICGDVHGQFSDLLRLFEYGGYPPEANYLFLGDYVDRGKQSIETICLLLAYKVKYKENFFLLRGHHECASINRIYGFYDECKRRFNV 695
            MD  +LDD+IRRLL+ KN +  K  QL+E+EI+QLCAA+KEIFL QPNLLELEAPIKICGDVHGQ+SDLLRLF+YGGYPP+ANYLFLGDYVDRGKQS+ETICLLLAYKVKY ENFFLLRG+HECAS+NRIYGFYDECKRRF+V
Sbjct:    1 MDPALLDDVIRRLLEVKNLKPGKNAQLSESEIKQLCAAAKEIFLQQPNLLELEAPIKICGDVHGQYSDLLRLFDYGGYPPQANYLFLGDYVDRGKQSLETICLLLAYKVKYPENFFLLRGNHECASVNRIYGFYDECKRRFSV 143          
BLAST of FC876426 vs. ExPASy Swiss-Prot
Match: PP11_TOBAC (Serine/threonine-protein phosphatase PP1 isozyme 1 OS=Nicotiana tabacum GN=NPP1 PE=2 SV=1)

HSP 1 Score: 252.677 bits (644), Expect = 1.394e-66
Identity = 117/144 (81.25%), Postives = 133/144 (92.36%), Query Frame = 3
Query:  264 LMDETVLDDIIRRLLDAKNGRTTKQVQLTEAEIRQLCAASKEIFLSQPNLLELEAPIKICGDVHGQFSDLLRLFEYGGYPPEANYLFLGDYVDRGKQSIETICLLLAYKVKYKENFFLLRGHHECASINRIYGFYDECKRRFNV 695
            L++  VLDDII RLL+ +N RT +QVQL+EAEIR LC+AS+EIFL QPNLL+L+ PIKICGD+HGQ+ DLLRLFEYGG+PPEANYLFLGDYVDRGKQS+ETICLLLAYK+KY ENFFLLRG+HECASINRIYGFYDECKRRFNV
Sbjct:   14 LIEAGVLDDIINRLLEFRNARTVRQVQLSEAEIRSLCSASREIFLQQPNLLDLKPPIKICGDIHGQYGDLLRLFEYGGFPPEANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFNV 157          
BLAST of FC876426 vs. ExPASy Swiss-Prot
Match: PP11_ARATH (Serine/threonine-protein phosphatase PP1 isozyme 1 OS=Arabidopsis thaliana GN=TOPP1 PE=2 SV=1)

HSP 1 Score: 248.825 bits (634), Expect = 2.013e-65
Identity = 120/145 (82.76%), Postives = 132/145 (91.03%), Query Frame = 3
Query:  267 MDETVLDDIIRRLLDAKNGR--TTKQVQLTEAEIRQLCAASKEIFLSQPNLLELEAPIKICGDVHGQFSDLLRLFEYGGYPPEANYLFLGDYVDRGKQSIETICLLLAYKVKYKENFFLLRGHHECASINRIYGFYDECKRRFNV 695
            M+  VLDDIIRRL++ +N R  + KQV L+E EIRQLCA SKEIFL QPNLLELEAPIKICGD+HGQ+SDLLRLFEYGG+PPEANYLFLGDYVDRGKQS+ETICLLLAYK+KY ENFFLLRG+HE ASINRIYGFYDECKRRFNV
Sbjct:   15 MEPAVLDDIIRRLVEFRNTRPGSGKQVHLSEGEIRQLCAVSKEIFLQQPNLLELEAPIKICGDIHGQYSDLLRLFEYGGFPPEANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHESASINRIYGFYDECKRRFNV 159          
BLAST of FC876426 vs. ExPASy Swiss-Prot
Match: PP11_ACECL (Serine/threonine-protein phosphatase PP1 isozyme 1 OS=Acetabularia cliftonii PE=3 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 2.629e-65
Identity = 113/143 (79.02%), Postives = 130/143 (90.91%), Query Frame = 3
Query:  267 MDETVLDDIIRRLLDAKNGRTTKQVQLTEAEIRQLCAASKEIFLSQPNLLELEAPIKICGDVHGQFSDLLRLFEYGGYPPEANYLFLGDYVDRGKQSIETICLLLAYKVKYKENFFLLRGHHECASINRIYGFYDECKRRFNV 695
            MDE+ +DD+I RLL+ +N R  KQVQLTE+EIR LC  SKEI   QPNLLELEAPIKICGD+HGQ++DLLRLFEYGG+PPEANYLFLGDYVDRGKQS+ETICLLLA+K+KY ENFF+LRG+HECASINRIYGFYDECKRR+N+
Sbjct:    1 MDESTVDDVIERLLEVRNNRPGKQVQLTESEIRLLCLTSKEILSEQPNLLELEAPIKICGDIHGQYTDLLRLFEYGGFPPEANYLFLGDYVDRGKQSLETICLLLAFKIKYPENFFILRGNHECASINRIYGFYDECKRRYNI 143          
BLAST of FC876426 vs. ExPASy Swiss-Prot
Match: PP12_ARATH (Serine/threonine-protein phosphatase PP1 isozyme 2 OS=Arabidopsis thaliana GN=TOPP2 PE=2 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 4.484e-65
Identity = 118/144 (81.94%), Postives = 129/144 (89.58%), Query Frame = 3
Query:  267 MDETVLDDIIRRLLDAKNGRT-TKQVQLTEAEIRQLCAASKEIFLSQPNLLELEAPIKICGDVHGQFSDLLRLFEYGGYPPEANYLFLGDYVDRGKQSIETICLLLAYKVKYKENFFLLRGHHECASINRIYGFYDECKRRFNV 695
            MD   LDDIIRRLLD +N +  TKQ  L E+EIRQLC  S+EIFL QPNLLELEAPIKICGD+HGQ+SDLLRLFEYGG+PP ANYLFLGDYVDRGKQS+ETICLLLAYK+KY ENFFLLRG+HECASINRIYGFYDECKRRF+V
Sbjct:    9 MDPAALDDIIRRLLDYRNPKPGTKQAMLNESEIRQLCIVSREIFLQQPNLLELEAPIKICGDIHGQYSDLLRLFEYGGFPPTANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFSV 152          
The following BLAST results are available for this feature:
BLAST of FC876426 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 196
Match NameE-valueIdentityDescription
PP1_MEDVA1.177e-7390.91Serine/threonine-protein phosphatase PP1 OS=Medica... [more]
PP16_ARATH7.142e-7188.81Serine/threonine-protein phosphatase PP1 isozyme 6... [more]
PP13_ARATH1.347e-6983.92Serine/threonine-protein phosphatase PP1 isozyme 3... [more]
PP1_ORYSJ1.945e-6884.62Serine/threonine-protein phosphatase PP1 OS=Oryza ... [more]
PP12_TOBAC7.391e-6883.92Serine/threonine-protein phosphatase PP1 isozyme 2... [more]
PP1_MAIZE6.257e-6782.52Serine/threonine-protein phosphatase PP1 OS=Zea ma... [more]
PP11_TOBAC1.394e-6681.25Serine/threonine-protein phosphatase PP1 isozyme 1... [more]
PP11_ARATH2.013e-6582.76Serine/threonine-protein phosphatase PP1 isozyme 1... [more]
PP11_ACECL2.629e-6579.02Serine/threonine-protein phosphatase PP1 isozyme 1... [more]
PP12_ARATH4.484e-6581.94Serine/threonine-protein phosphatase PP1 isozyme 2... [more]

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Properties
Property NameValue
Genbank descriptionC32004F06EF DevOvary1 Citrus clementina cDNA clone C32004F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876426 ID=FC876426; Name=FC876426; organism=Citrus clementina; type=EST; length=695bp
GATTATCATTCATCATTCATCTCACCTATGACCTATATCCTCTTTAACTC
CGTCAACTTCATCCACCGAGCGGGAAATGGCCGCCAACGATTCTCTCAAT
AATATGCCAAACTCCCCTTTCTCCGTCAACGGAATCTGTTGAATCCGAGA
CTCAACAAATCTAATACTCGGTTTTATAACACCGTCAGTATCTGATTTTA
TTCTTATTTTAGAAACATAAATTTCTAGGGTTTGTTTTATTTCGATATAA
GTATTTGTGTTTTTTGATGGACGAGACTGTGCTTGATGATATAATACGAC
GGCTCCTTGATGCGAAGAATGGGAGGACGACGAAGCAGGTGCAGCTCACG
GAGGCTGAAATACGGCAGCTTTGTGCTGCGTCCAAGGAGATATTCCTTAG
CCAGCCTAATCTTCTCGAGCTTGAAGCTCCTATAAAGATTTGTGGTGATG
TTCATGGTCAGTTTTCGGATCTTCTGCGTTTGTTTGAGTATGGTGGGTAC
CCACCTGAAGCAAATTATTTATTCCTCGGGGATTATGTTGATCGTGGTAA
GCAGAGTATAGAGACAATATGCTTGCTTCTTGCATACAAGGTCAAATATA
AGGAGAACTTTTTTCTTCTTAGGGGNCACCATGAATGTGCTTCCATCAAC
CGTATTTATGGTTTTTATGATGAGTGCAAGAGGAGGTTTAATGTT
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