FC876428

Overview
NameFC876428
Unique NameFC876428
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length497
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC876428_ssr327 microsatellite FC876428_ssr327:327..344. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14360 contig Ccv1_Contig14360:189..686. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
BLAST of FC876428 vs. ExPASy Swiss-Prot
Match: IAA27_ARATH (Auxin-responsive protein IAA27 OS=Arabidopsis thaliana GN=IAA27 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.844e-13
Identity = 53/132 (40.15%), Postives = 64/132 (48.48%), Query Frame = 1
Query:   91 SGLNLKATELRLGLPGSESPERGSDKNGNAAVILSLKSFAGSGAKRVFCDATDADAKWVFSVSEAAAGRLFSPRXXXXXXXXXXXHGKVHVGSDSGLGGPVLEDGNGACVAAQSPKPVMMVQDKKSHEIAPS 486
            +GLN KATELRLGLPGSESPER   +     + L+  S   SGAKRVF DA +   KWVFS     A                       VGS SG    V++DG          KP + V++KKS   AP+
Sbjct:   36 NGLNFKATELRLGLPGSESPERVDSR----FLALNKSSCPVSGAKRVFSDAINDSNKWVFSPGSTTA--------------------TGDVGSGSGPRTSVVKDGKSTTFT----KPAVPVKEKKSSATAPA 139          

HSP 2 Score: 21.557 bits (44), Expect = 3.844e-13
Identity = 11/26 (42.31%), Postives = 13/26 (50.00%), Query Frame = 2
Query:   17 AMHDYIGLSNIIIRSEVANNLKWKSR 94
            A HDYIGLS          + K K+R
Sbjct:    7 AEHDYIGLSEFPTMEATTMSDKTKTR 32          
The following BLAST results are available for this feature:
BLAST of FC876428 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
IAA27_ARATH3.844e-1340.15Auxin-responsive protein IAA27 OS=Arabidopsis thal... [more]
back to top
Properties
Property NameValue
Genbank descriptionC32004F08EF DevOvary1 Citrus clementina cDNA clone C32004F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876428 ID=FC876428; Name=FC876428; organism=Citrus clementina; type=EST; length=497bp
TGTGTCTGTAGAGCATGCCATGCATGATTACATCGGCTTAAGCAATATTA
TCATCAGAAGTGAAGTTGCTAATAACTTAAAATGGAAAAGTCGGGTTTGA
ATTTGAAAGCAACCGAGTTGAGACTCGGGTTACCCGGGTCAGAGTCACCA
GAGAGAGGGAGTGACAAGAATGGGAACGCGGCAGTAATTTTGTCACTGAA
GAGCTTTGCGGGCTCAGGAGCTAAGAGGGTCTTTTGTGATGCCACTGACG
CGGACGCCAAATGGGTTTTCTCTGTATCCGAAGCTGCTGCTGGACGGCTG
TTTTCTCCAAGAGGTGGTGGTAGTAGTAATAATAATAATAATAATCATGG
CAAGGTTCATGTCGGGTCGGATTCGGGTTTGGGTGGCCCGGTTTTGGAAG
ATGGCAATGGTGCTTGTGTTGCTGCCCAGTCGCCAAAGCCGGTGATGATG
GTGCAGGATAAGAAGTCTCATGAGATTGCTCCTTCGAAGGCACTAGT
back to top