FC876440

Overview
NameFC876440
Unique NameFC876440
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length730
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC876440_ssr26 microsatellite FC876440_ssr26:26..61. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11252 contig Ccv1_Contig11252:91..820. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876440 vs. ExPASy Swiss-Prot
Match: TT12_ARATH (Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.100e-19
Identity = 53/158 (33.54%), Postives = 87/158 (55.06%), Query Frame = 1
Query:  205 ESKKLWIVAAPAIFTRFSSFGLNVVSQAFIGHIGATQLAAYSLVFTVLLRFANGILLGMASALETLCGQAFGAKQYHMLGIYLQRSWIVLTICAXXXXXXXXXXXXXXVALGQEENIAEVAGTISFMLIPVLFAFIISFTCQMYLQAQSRNMIISYLA 678
            ESK LW ++  +I     ++ L+ V+  F GH+G+ QLA  S+    +   A GI+LGMASA++T+CGQA+GA+QY  +GI  QR+ ++    A                +GQ   IA      +  +IP ++AF ++   Q +LQAQ+    ++Y++
Sbjct:   51 ESKLLWTLSGASIVVSVLNYMLSFVTVMFTGHLGSLQLAGASIATVGIQGLAYGIMLGMASAVQTVCGQAYGARQYSSMGIICQRAMVLHLAAAVFLTFLYWYSGPILKTMGQSVAIAHEGQIFARGMIPQIYAFALACPMQRFLQAQNIVNPLAYMS 208          
BLAST of FC876440 vs. ExPASy Swiss-Prot
Match: S47A1_XENTR (Multidrug and toxin extrusion protein 1 OS=Xenopus tropicalis GN=slc47a1 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.152e-12
Identity = 41/152 (26.97%), Postives = 73/152 (48.03%), Query Frame = 1
Query:  193 KLWVESKKLWIVAAPAIFTRFSSFGLNVVSQAFIGHIGATQLAAYSLVFTVLLRFANGILLGMASALETLCGQAFGAKQYHMLGIYLQRSWIVLTICAXXXXXXXXXXXXXXVALGQEENIAEVAGTISFMLIPVLFAFIISFTCQMYLQAQ 648
            ++W E+++L  +AAPA  ++   F +++VS  F GH+G  +L A SL  T++      +  G+A A +TL  Q FG     ++GI LQR  ++L +                +   Q+  ++++      + +P L A  +      YLQ Q
Sbjct:   44 EVWQEAQQLLALAAPAFLSQLMIFLISIVSSIFCGHLGKVELDAVSLAITIINITGVAVGTGLAGACDTLISQTFGGSNLKLVGIILQRGILILLLFCFPCWALLINTESILLLFRQDPEVSKLTQIYVLIFLPALPAAFLYQLLAKYLQNQ 195          
BLAST of FC876440 vs. ExPASy Swiss-Prot
Match: S47A2_MOUSE (Multidrug and toxin extrusion protein 2 OS=Mus musculus GN=Slc47a2 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.671e-12
Identity = 43/148 (29.05%), Postives = 71/148 (47.97%), Query Frame = 1
Query:  205 ESKKLWIVAAPAIFTRFSSFGLNVVSQAFIGHIGATQLAAYSLVFTVLLRFANGILLGMASALETLCGQAFGAKQYHMLGIYLQRSWIVLTICAXXXXXXXXXXXXXXVALGQEENIAEVAGTISFMLIPVLFAFIISFTCQMYLQAQ 648
            E+  L  +A P    +   F +++VS  F GH+G  +L A +L  +V+      +  G+ASA +TL  Q+FG K    +G+ LQR  ++L +C               + L Q+ ++A +A     + IP L A  +      YLQ+Q
Sbjct:   43 EAAALVALAGPVFLAQLMIFLISIVSSIFCGHLGKVELDAVTLAVSVVNVTGISVGTGLASACDTLMSQSFGGKNLKRVGVILQRGILILLLCCFPCWAIFLNTERLLLLLRQDPDVARLAQVYVMICIPALPAAFLFQLQTRYLQSQ 190          
The following BLAST results are available for this feature:
BLAST of FC876440 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
TT12_ARATH3.100e-1933.54Protein TRANSPARENT TESTA 12 OS=Arabidopsis thalia... [more]
S47A1_XENTR2.152e-1226.97Multidrug and toxin extrusion protein 1 OS=Xenopus... [more]
S47A2_MOUSE3.671e-1229.05Multidrug and toxin extrusion protein 2 OS=Mus mus... [more]
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Properties
Property NameValue
Genbank descriptionC32004G10EF DevOvary1 Citrus clementina cDNA clone C32004G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876440 ID=FC876440; Name=FC876440; organism=Citrus clementina; type=EST; length=730bp
GGAGAGCTCCCTTTGCACTATTTCTTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCCTGCTAGCTCTCATCTGTCACTTGAAAGAAAAGCTTTTT
TTCTGGAGGTGAGAATGGTGGGAGAGATCAAAGAGAAGCTATTAGGAAAC
ACGGAGGAAAATGATGTTGATGGGCAAGTGAAATTCAGGCAAAAGCTGTG
GGTGGAATCCAAAAAGTTATGGATTGTAGCAGCTCCCGCTATTTTCACAA
GATTTTCTTCATTTGGGCTCAACGTAGTTAGTCAGGCATTTATTGGGCAC
ATTGGCGCGACCCAACTAGCTGCCTACTCACTTGTGTTTACTGTTCTCTT
GAGGTTTGCAAATGGCATCCTGTTGGGCATGGCTAGTGCATTAGAGACGC
TCTGTGGGCAAGCTTTTGGGGCGAAACAATACCACATGCTAGGAATATAT
CTTCAAAGATCATGGATAGTCTTAACCATTTGTGCTATCCTTCTCTTACC
TCTGTTCTTCTTCACTACACCAATTTTGGTGGCTTTGGGCCAAGAAGAAA
ATATTGCTGAAGTGGCAGGAACTATTTCTTTCATGCTAATCCCTGTGTTG
TTCGCCTTCATCATATCCTTTACCTGCCAAATGTACCTACAAGCCCAGAG
CAGAAACATGATTATCTCCTACTTGGCGGCATGTTCATTTTTGCTTCATC
TCTTTCTTTCGTGGCTTTTTACATGAAATT
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