FC876445

Overview
NameFC876445
Unique NameFC876445
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length661
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14552 contig Ccv1_Contig14552:77..737. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876445 vs. ExPASy Swiss-Prot
Match: PA2G4_MOUSE (Proliferation-associated protein 2G4 OS=Mus musculus GN=Pa2g4 PE=1 SV=3)

HSP 1 Score: 183.726 bits (465), Expect = 7.143e-46
Identity = 95/193 (49.22%), Postives = 131/193 (67.88%), Query Frame = 3
Query:   93 EREEKELDLTSPEVVTKYKSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGNMYKNVKKKIERGVAFPSCVSVNNTLCHFSPLASDET-VLQEGDMIKIDLGCHIDGFIAVVAHTHVL---QDEPVTGRXXXXXXXXXXXXXXXLRLVRPGKKNKDVTEAIQKVAAAYDCKIVEGVLSHQLKQFVI 659
            E E++E  +    VVTKYK   +IAN+ L+ +V     GV ++ LCEKGD+ I E+TG ++K  +K++++G+AFP+ +SVNN +CHFSPL SD+  +L+EGD++KIDLG H+DGFIA VAHT V+   Q   VTGR               LRLV+PG +N  VTEA  KVA +++C  +EG+LSHQLKQ VI
Sbjct:    4 EDEQQEQTIAEDLVVTKYKMGGDIANRVLRSLVEASSSGVSVLSLCEKGDAMIMEETGKIFKK-EKEMKKGIAFPTSISVNNCVCHFSPLKSDQDYILKEGDLVKIDLGVHVDGFIANVAHTFVIGVAQGTQVTGRKADVIKAAHLCAEAALRLVKPGNQNTQVTEAWNKVAHSFNCTPIEGMLSHQLKQHVI 195          
BLAST of FC876445 vs. ExPASy Swiss-Prot
Match: PA2G4_HUMAN (Proliferation-associated protein 2G4 OS=Homo sapiens GN=PA2G4 PE=1 SV=3)

HSP 1 Score: 183.341 bits (464), Expect = 9.329e-46
Identity = 95/193 (49.22%), Postives = 131/193 (67.88%), Query Frame = 3
Query:   93 EREEKELDLTSPEVVTKYKSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGNMYKNVKKKIERGVAFPSCVSVNNTLCHFSPLASDET-VLQEGDMIKIDLGCHIDGFIAVVAHTHVL---QDEPVTGRXXXXXXXXXXXXXXXLRLVRPGKKNKDVTEAIQKVAAAYDCKIVEGVLSHQLKQFVI 659
            E E++E  +    VVTKYK   +IAN+ L+ +V     GV ++ LCEKGD+ I E+TG ++K  +K++++G+AFP+ +SVNN +CHFSPL SD+  +L+EGD++KIDLG H+DGFIA VAHT V+   Q   VTGR               LRLV+PG +N  VTEA  KVA +++C  +EG+LSHQLKQ VI
Sbjct:    4 EDEQQEQTIAEDLVVTKYKMGGDIANRVLRSLVEASSSGVSVLSLCEKGDAMIMEETGKIFKK-EKEMKKGIAFPTSISVNNCVCHFSPLKSDQDYILKEGDLVKIDLGVHVDGFIANVAHTFVVDVAQGTQVTGRKADVIKAAHLCAEAALRLVKPGNQNTQVTEAWNKVAHSFNCTPIEGMLSHQLKQHVI 195          
BLAST of FC876445 vs. ExPASy Swiss-Prot
Match: PRLA_DICDI (Proliferation-associated protein A OS=Dictyostelium discoideum GN=prlA PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 8.173e-42
Identity = 86/202 (42.57%), Postives = 130/202 (64.36%), Query Frame = 3
Query:   81 MSDDEREEKEL------DLTSPEVVTKYKSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGNMYKNVKKKIERGVAFPSCVSVNNTLCHFSPLASDETVLQEGDMIKIDLGCHIDGFIAVVAHTHVLQD---EPVTGRXXXXXXXXXXXXXXXLRLVRPGKKNKDVTEAIQKVAAAYDCKIVEGVLSHQLKQFVI 659
            MS+ ++E KE       DL++P VV  Y +A  IAN A++ V+S+C  G  +VD+C+ GD FI  +    +   +K +E+G+AFP+CVSVNN + HFSPL  +   L++GD++KIDLGCHIDG+IAV AHT ++ +   E +TG+               LR++RPGK + +VT+ I+K++  Y    V G+LSH+LK+F+I
Sbjct:    1 MSNKDQEIKEEAPVAIEDLSNPVVVDSYNAAGIIANNAIKHVISKCVVGALVVDICQYGDDFIEAEAAKTFTK-RKNLEKGIAFPTCVSVNNCVGHFSPLKGNTRTLKQGDVVKIDLGCHIDGYIAVGAHTIIIGNTSAESMTGKVADAICAAHYALEAALRMIRPGKTSNEVTQVIEKISDMYGVTSVSGILSHELKRFII 201          
BLAST of FC876445 vs. ExPASy Swiss-Prot
Match: CDB4_SCHPO (Curved DNA-binding protein OS=Schizosaccharomyces pombe GN=cdb4 PE=1 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 9.677e-35
Identity = 76/187 (40.64%), Postives = 109/187 (58.29%), Query Frame = 3
Query:  108 ELDLTSPEVVTKYKSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGNMYKNVKKKIERGVAFPSCVSVNNTLCHFSPLASD---ETVLQEGDMIKIDLGCHIDGFIAVVAHTHVLQDEPVTGRXXXXXXXXXXXXXXXLRLVRPGKKNKDVTEAIQKVAAAYDCKIVEGVLSHQLKQFVI 659
            +  L++PE V KYK A E++   ++ VV  C+PG KI D+C +GD  + E    +Y+   K   +G+AFP+ VS N+   H SPL SD      L+ GD++KI LG HIDGF ++VA T V+ +EPVTG                 R ++PG  N  VT+ + K+A +Y CK V G+LSHQ ++ VI
Sbjct:   13 DYSLSNPETVNKYKIAGEVSQNVIKKVVELCQPGAKIYDICVRGDELLNEAIKKVYRT--KDAYKGIAFPTAVSPNDMAAHLSPLKSDPEANLALKSGDVVKILLGAHIDGFASLVATTTVVSEEPVTGPAADVIAAASAALKAAQRTIKPGNTNWQVTDIVDKIATSYGCKPVAGMLSHQQEREVI 197          
BLAST of FC876445 vs. ExPASy Swiss-Prot
Match: AMPM2_BOVIN (Methionine aminopeptidase 2 OS=Bos taurus GN=METAP2 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.517e-15
Identity = 56/174 (32.18%), Postives = 86/174 (49.43%), Query Frame = 3
Query:   99 EEKELDLTSPEVVTKYKSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGNMYKNVKKK-IERGVAFPSCVSVNNTLCHFSPLASDETVLQEGDMIKIDLGCHIDGFIAVVAHTHVLQDEPVTGRXXXXXXXXXXXXXXXLRLVRPGKKNKDVTEAIQKVAAAYDCKI 617
            E+K LD  S E+   ++ AAE   +  + V+S  KPG+ ++++CEK +   R       K +K+  +  G+AFP+  S+NN   H++P A D TVLQ  D+ KID G HI G I   A T     +  T                 ++      +  DV EAIQ+V  +Y+ +I
Sbjct:  153 EKKALDQASEEIWNDFREAAEAHRQVRKYVMSWIKPGMTMIEICEKMEDCSR-------KLIKENGLNAGLAFPTGCSLNNCAAHYTPNAGDTTVLQYDDICKIDFGTHISGRIIDCAFTVTFNPKYDT-----LLKAVKDATNTGIKCAGIDVRLCDVGEAIQEVMESYEVEI 314          
BLAST of FC876445 vs. ExPASy Swiss-Prot
Match: AMPM2_HUMAN (Methionine aminopeptidase 2 OS=Homo sapiens GN=METAP2 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.112e-14
Identity = 56/174 (32.18%), Postives = 86/174 (49.43%), Query Frame = 3
Query:   99 EEKELDLTSPEVVTKYKSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGNMYKNVKKK-IERGVAFPSCVSVNNTLCHFSPLASDETVLQEGDMIKIDLGCHIDGFIAVVAHTHVLQDEPVTGRXXXXXXXXXXXXXXXLRLVRPGKKNKDVTEAIQKVAAAYDCKI 617
            E+K LD  S E+   ++ AAE   +  + V+S  KPG+ ++++CEK +   R       K +K+  +  G+AFP+  S+NN   H++P A D TVLQ  D+ KID G HI G I   A T     +  T                 ++      +  DV EAIQ+V  +Y+ +I
Sbjct:  154 EKKALDQASEEIWNDFREAAEAHRQVRKYVMSWIKPGMTMIEICEKLEDCSR-------KLIKENGLNAGLAFPTGCSLNNCAAHYTPNAGDTTVLQYDDICKIDFGTHISGRIIDCAFTVTFNPKYDT-----LLKAVKDATNTGIKCAGIDVRLCDVGEAIQEVMESYEVEI 315          
BLAST of FC876445 vs. ExPASy Swiss-Prot
Match: AMPM2_RAT (Methionine aminopeptidase 2 OS=Rattus norvegicus GN=Metap2 PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.453e-14
Identity = 55/174 (31.61%), Postives = 85/174 (48.85%), Query Frame = 3
Query:   99 EEKELDLTSPEVVTKYKSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGNMYKNVKKK-IERGVAFPSCVSVNNTLCHFSPLASDETVLQEGDMIKIDLGCHIDGFIAVVAHTHVLQDEPVTGRXXXXXXXXXXXXXXXLRLVRPGKKNKDVTEAIQKVAAAYDCKI 617
            E+K LD  S E+   ++ AAE   +  + V+S  KPG+ ++++CEK +   R       K +K+  +  G+AFP+  S+NN   H++P A D TVLQ  D+ KID G HI G I   A T          +               ++      +  DV EAIQ+V  +Y+ +I
Sbjct:  154 EKKALDQASEEIWNDFREAAEAHRQVRKYVMSWIKPGMTMIEICEKLEDCSR-------KLIKENGLNAGLAFPTGCSLNNCAAHYTPNAGDTTVLQYDDICKIDFGTHISGRIIDCAFTVTFNP-----KYDILLKAVKDATNTGIKCAGIDVRLCDVGEAIQEVMESYEVEI 315          
BLAST of FC876445 vs. ExPASy Swiss-Prot
Match: AMPM2_MOUSE (Methionine aminopeptidase 2 OS=Mus musculus GN=Metap2 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.453e-14
Identity = 55/174 (31.61%), Postives = 85/174 (48.85%), Query Frame = 3
Query:   99 EEKELDLTSPEVVTKYKSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGNMYKNVKKK-IERGVAFPSCVSVNNTLCHFSPLASDETVLQEGDMIKIDLGCHIDGFIAVVAHTHVLQDEPVTGRXXXXXXXXXXXXXXXLRLVRPGKKNKDVTEAIQKVAAAYDCKI 617
            E+K LD  S E+   ++ AAE   +  + V+S  KPG+ ++++CEK +   R       K +K+  +  G+AFP+  S+NN   H++P A D TVLQ  D+ KID G HI G I   A T          +               ++      +  DV EAIQ+V  +Y+ +I
Sbjct:  154 EKKALDQASEEIWNDFREAAEAHRQVRKYVMSWIKPGMTMIEICEKLEDCSR-------KLIKENGLNAGLAFPTGCSLNNCAAHYTPNAGDTTVLQYDDICKIDFGTHISGRIIDCAFTVTFNP-----KYDILLTAVKDATNTGIKCAGIDVRLCDVGEAIQEVMESYEVEI 315          
BLAST of FC876445 vs. ExPASy Swiss-Prot
Match: AMP2A_ARATH (Methionine aminopeptidase 2A OS=Arabidopsis thaliana GN=MAP2A PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 2.478e-14
Identity = 49/175 (28.00%), Postives = 87/175 (49.71%), Query Frame = 3
Query:   99 EEKELDLTSPEVVTKYKSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGNMYKNVKKKIERGVAFPSCVSVNNTLCHFSPLASDETVLQEGDMIKIDLGCHIDGFIAVVAHTHVLQD--EPVTGRXXXXXXXXXXXXXXXLRLVRPGKKNKDVTEAIQKVAAAYDCKI 617
            E++E++     +    + AAE+  +  + + S  KPG+ ++DLCE  ++ +R+         +  ++ G+AFP+  S+NN   H++P + D+TVLQ  D++K+D G HIDG I   A T       +P+                  +RL        DV  A+Q+V  +Y+ +I
Sbjct:  117 EKREMERLQKPIYNSLRQAAEVHRQVRKYMRSILKPGMLMIDLCETLENTVRKLIS------ENGLQAGIAFPTGCSLNNVAAHWTPNSGDKTVLQYDDVMKLDFGTHIDGHIVDSAFTVAFNPMFDPLLAASRDATYTGIKEAGVDVRLC-------DVGAAVQEVMESYEVEI 278          
BLAST of FC876445 vs. ExPASy Swiss-Prot
Match: ARX1_SCHPO (Probable metalloprotease arx1 OS=Schizosaccharomyces pombe GN=arx1 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.236e-14
Identity = 40/123 (32.52%), Postives = 70/123 (56.91%), Query Frame = 3
Query:  138 TKYKSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGNMYKNVKKKIERGVAFPSCVSVNNTLCHFSP-----LASDETV--LQEGDMIKIDLGCHIDGFIAVVAHTHVLQDEPVTG 485
            +KY+ A  + +KA   V S C PG    ++   GD+ + E   ++YK+  ++ E+G+A P+ + VNN   +++P     +A ++    LQ GD+ KI +G H DG+ A+++HT V+   P  G
Sbjct:   19 SKYRDAGALVSKAFHQVASRCVPGASTREISSYGDNLLHEYKSSIYKS--QRFEKGIAEPTSICVNNCAYNYAPGPESVIAGNDNSYHLQVGDVTKISMGLHFDGYTALISHTIVVTPPPQPG 139          
The following BLAST results are available for this feature:
BLAST of FC876445 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
PA2G4_MOUSE7.143e-4649.22Proliferation-associated protein 2G4 OS=Mus muscul... [more]
PA2G4_HUMAN9.329e-4649.22Proliferation-associated protein 2G4 OS=Homo sapie... [more]
PRLA_DICDI8.173e-4242.57Proliferation-associated protein A OS=Dictyosteliu... [more]
CDB4_SCHPO9.677e-3540.64Curved DNA-binding protein OS=Schizosaccharomyces ... [more]
AMPM2_BOVIN8.517e-1532.18Methionine aminopeptidase 2 OS=Bos taurus GN=METAP... [more]
AMPM2_HUMAN1.112e-1432.18Methionine aminopeptidase 2 OS=Homo sapiens GN=MET... [more]
AMPM2_RAT1.453e-1431.61Methionine aminopeptidase 2 OS=Rattus norvegicus G... [more]
AMPM2_MOUSE1.453e-1431.61Methionine aminopeptidase 2 OS=Mus musculus GN=Met... [more]
AMP2A_ARATH2.478e-1428.00Methionine aminopeptidase 2A OS=Arabidopsis thalia... [more]
ARX1_SCHPO3.236e-1432.52Probable metalloprotease arx1 OS=Schizosaccharomyc... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32004H04EF DevOvary1 Citrus clementina cDNA clone C32004H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876445 ID=FC876445; Name=FC876445; organism=Citrus clementina; type=EST; length=661bp
GGATTAGACTTTAACAGAACTCTCATTTCCCGTTTCTTTTACAGATTGTT
TGGTAGATTTTTTCTACAAAAATCAAAACGATGTCGGACGATGAAAGGGA
GGAGAAGGAGTTGGATCTCACTTCTCCTGAAGTTGTCACCAAATACAAAA
GCGCTGCTGAGATCGCCAATAAGGCGTTGCAGTTGGTAGTATCAGAATGC
AAACCCGGTGTTAAGATTGTTGACCTTTGTGAGAAGGGAGATTCATTTAT
TAGAGAACAAACCGGCAACATGTACAAGAATGTAAAGAAGAAGATCGAGA
GGGGCGTTGCATTCCCAAGTTGTGTTTCTGTTAACAACACACTCTGTCAT
TTTTCACCACTTGCAAGTGATGAGACAGTCTTGCAAGAAGGAGACATGAT
CAAGATTGATTTGGGATGTCACATAGATGGGTTTATTGCTGTAGTTGCAC
ACACTCATGTCCTCCAGGATGAGCCTGTAACAGGCAGGGCAGCTGATGTT
ATTGCTGCAGCAAATACTGCTGCTGAGGTTGCCTTGAGGCTTGTAAGGCC
AGGAAAGAAGAACAAAGATGTAACAGAAGCCATTCAGAAGGTAGCTGCTG
CATATGATTGCAAGATTGTTGAAGGTGTTCTCAGCCACCAGCTGAAGCAG
TTTGTGATTGA
back to top