FC876447
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: RH36_ARATH (DEAD-box ATP-dependent RNA helicase 36 OS=Arabidopsis thaliana GN=RH36 PE=2 SV=1) HSP 1 Score: 222.631 bits (566), Expect = 1.223e-57 Identity = 110/152 (72.37%), Postives = 124/152 (81.58%), Query Frame = 3 Query: 162 KSKTRSKXXXXXXXXXXSKNAKTAQLEKFTNPDPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLL 617 KS+ K + T Q EKFTNP+P+S TT +T F GLGLAEWAV+TCKELGMR+PTPVQTHC+PKIL G+DVLGLAQTGSGKTAAFALPILHRLAEDPYGV ALV+TPTRELA+QLAEQFKALGS L+LRC V+VGGMD+L Sbjct: 17 KSRKNPKTVVNIQSQKLDSDQNTPQFEKFTNPNPSSDTTSAT-NFEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALPILHRLAEDPYGVFALVVTPTRELAFQLAEQFKALGSCLNLRCSVIVGGMDML 167
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: RH36_ORYSJ (DEAD-box ATP-dependent RNA helicase 36 OS=Oryza sativa subsp. japonica GN=Os07g0633500 PE=3 SV=1) HSP 1 Score: 157.532 bits (397), Expect = 4.830e-38 Identity = 81/135 (60.00%), Postives = 94/135 (69.63%), Query Frame = 3 Query: 213 SKNAKTAQLEKFTNPDPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLL 617 S A A + + D + ST FA LGL++W V C LGMR PT VQ CIP+ LEG+DVLG+A+TGSGKTAAFALPILHRL EDPYGV AL + PTRELA QLAEQF+ALG+ L LRC +GG D L Sbjct: 54 SDEAPAAAVTEHAGDDAAAAAVPST--FAELGLSQWLVDVCDSLGMRVPTAVQRRCIPRALEGRDVLGIAETGSGKTAAFALPILHRLGEDPYGVAALALAPTRELAAQLAEQFRALGAPLGLRCLAAIGGFDSL 186
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DDX49_HUMAN (Probable ATP-dependent RNA helicase DDX49 OS=Homo sapiens GN=DDX49 PE=1 SV=1) HSP 1 Score: 151.369 bits (381), Expect = 3.461e-36 Identity = 69/108 (63.89%), Postives = 89/108 (82.41%), Query Frame = 3 Query: 294 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLL 617 FA LGL+ W V+ C++LG+++PTPVQ CIP ILEG+D LG A+TGSGKTAAF LPIL +L+EDPYG+ LV+TPTRELAYQ+AEQF+ LG L L+ ++VGGMD++ Sbjct: 4 FAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQKLSEDPYGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMV 111
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DDX49_MOUSE (Probable ATP-dependent RNA helicase DDX49 OS=Mus musculus GN=Ddx49 PE=2 SV=1) HSP 1 Score: 150.599 bits (379), Expect = 5.904e-36 Identity = 68/108 (62.96%), Postives = 89/108 (82.41%), Query Frame = 3 Query: 294 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLL 617 FA +GL+ W V+ C++LG+++PTPVQ CIP ILEG+D LG A+TGSGKTAAF LPIL +L+EDPYG+ LV+TPTRELAYQ+AEQF+ LG L L+ ++VGGMD++ Sbjct: 4 FAEIGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQKLSEDPYGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMV 111
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DDX49_DICDI (Probable ATP-dependent RNA helicase ddx49 OS=Dictyostelium discoideum GN=ddx49 PE=3 SV=1) HSP 1 Score: 137.502 bits (345), Expect = 5.172e-32 Identity = 60/110 (54.55%), Postives = 87/110 (79.09%), Query Frame = 3 Query: 282 STVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMD 611 S TF LGL W V CK+LG + P+ +Q + IP+IL+G+D++ A+TGSGKTA+FA+PIL++L+EDPYGV A+++TPTRELA Q+ EQF A+G+ +++ C VV+GG+D Sbjct: 2 SDKTFEELGLTTWLVANCKQLGFKAPSNIQANTIPEILKGRDIIASAKTGSGKTASFAIPILNQLSEDPYGVFAVILTPTRELAVQIGEQFNAIGAPMNVNCSVVIGGID 111
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DBP8_SCLS1 (ATP-dependent RNA helicase dbp8 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=dbp8 PE=3 SV=1) HSP 1 Score: 130.954 bits (328), Expect = 4.841e-30 Identity = 70/165 (42.42%), Postives = 99/165 (60.00%), Query Frame = 3 Query: 120 QILLDGNFPLFAKPKSKTRSKXXXXXXXXXXSKNAKTAQLEKFTNPDPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614 Q+L DG+ PL A +R K +K+ K N TD+ TFA L + W V + + ++RPT +Q CIP+IL+G+D +G ++TGSGKT AFA+PIL + AEDP+G+ ALV+TPTRELA Q+ EQFKA+ S L+ ++ GG D+ Sbjct: 65 QVLEDGDIPLIATTSVPSRVK----------AKSQNNLLEPKNFNNGAVLAPTDAQTTFAALDVKPWLVASLGAMAIKRPTGIQKGCIPEILKGRDCIGGSRTGSGKTVAFAVPILQKWAEDPFGIFALVLTPTRELALQIYEQFKAISSPQSLKAVLITGGSDM 219
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: RRP3_BOTFB (ATP-dependent rRNA helicase rrp3 OS=Botryotinia fuckeliana (strain B05.10) GN=rrp3 PE=3 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 6.323e-30 Identity = 67/150 (44.67%), Postives = 96/150 (64.00%), Query Frame = 3 Query: 213 SKNAKTAQLEKFT-NPDPNSTTTDSTV--------------TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLL 617 SK K ++ E T +P+P T D+ V +F LG+ + + C LG + PTP+Q IP L+G+D++GLA+TGSGKTAAFALPIL L + P + LV+ PTRELAYQ+++QF+ALGS + ++C V+VGGMD++ Sbjct: 20 SKKTKESKKESHTPSPEPIEDTEDNRVIEETEEAEEDDAPKSFKDLGIVDSLCEACDTLGYKAPTPIQRESIPLALQGRDLIGLAETGSGKTAAFALPILQALLDKPQPLFGLVLAPTRELAYQISQQFEALGSVIRVKCAVIVGGMDMV 169
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: RRP3_YARLI (ATP-dependent rRNA helicase RRP3 OS=Yarrowia lipolytica GN=RRP3 PE=3 SV=1) HSP 1 Score: 129.798 bits (325), Expect = 1.078e-29 Identity = 61/113 (53.98%), Postives = 84/113 (74.34%), Query Frame = 3 Query: 279 DSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLL 617 + T TF LG+ + +TC+EL +PTP+Q IP LEG+D++GLAQTGSGKTAAFA+P+L L E+P + +V+ PTRELAYQ++E F+ALGS + LR VVVGGM+++ Sbjct: 61 EQTKTFKDLGVIDSICETCEELKFTKPTPIQAQSIPYALEGRDIIGLAQTGSGKTAAFAIPVLQSLYENPQPLYCVVLAPTRELAYQISETFEALGSAMGLRTAVVVGGMNMM 173
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DDX47_BOVIN (Probable ATP-dependent RNA helicase DDX47 OS=Bos taurus GN=DDX47 PE=2 SV=1) HSP 1 Score: 129.028 bits (323), Expect = 1.840e-29 Identity = 62/125 (49.60%), Postives = 87/125 (69.60%), Query Frame = 3 Query: 237 LEKFTNPDPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMD 611 LE P + + T TF LG+ + + C +LG +PT +Q IP L+G+D++GLA+TGSGKT AFALPIL+ L E P + ALV+TPTRELA+Q++EQF+ALGS + ++C V+VGG+D Sbjct: 10 LESMEAPQ-TAVEVEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGID 133
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DDX47_MOUSE (Probable ATP-dependent RNA helicase DDX47 OS=Mus musculus GN=Ddx47 PE=2 SV=2) HSP 1 Score: 128.642 bits (322), Expect = 2.403e-29 Identity = 59/111 (53.15%), Postives = 83/111 (74.77%), Query Frame = 3 Query: 279 DSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMD 611 + T TF LG+ + + C +LG +PT +Q IP L+G+D++GLA+TGSGKT AFALPIL+ L E P + ALV+TPTRELA+Q++EQF+ALGS + ++C V+VGG+D Sbjct: 21 EETKTFKDLGVTDVLCEACDQLGWAKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGID 131 The following BLAST results are available for this feature:
BLAST of FC876447 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC876447 ID=FC876447; Name=FC876447; organism=Citrus clementina; type=EST; length=617bpback to top |