FC876448

Overview
NameFC876448
Unique NameFC876448
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length625
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10903 contig Ccv1_Contig10903:92..716. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_ARATH (Diaminopimelate epimerase, chloroplastic OS=Arabidopsis thaliana GN=DAPF PE=1 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.153e-57
Identity = 112/178 (62.92%), Postives = 127/178 (71.35%), Query Frame = 2
Query:   92 MAITTTRSLSVTPVTRRSATPINXXXXXXXXXXXXXXXXXNLTLKVPSFRVSASSMSSIHAPESASRTSFLDRRESGFLHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            M I    ++SV P +RR +   +                     K PS RVSA++       E  S  SFLD++E+G LHFVKYHGLGNDFILVDNR+S+EP+IT EQA KLCDRNFG+GADGVIFAMPGVNGTDY MRIFNSDGSEPEMCGNGVRCFARFIAELENL GK SFT+HT
Sbjct:    1 MEIAAVSTVSVAPQSRRVSNAFSRNLGSVSSLSFGFFEK-EYCFKSPSLRVSAAASMDAVTAEKFSPASFLDKKETGVLHFVKYHGLGNDFILVDNRDSSEPKITQEQAAKLCDRNFGVGADGVIFAMPGVNGTDYAMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGKHSFTIHT 177          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_ORYSJ (Putative diaminopimelate epimerase, chloroplastic OS=Oryza sativa subsp. japonica GN=DAPF PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 3.329e-50
Identity = 95/133 (71.43%), Postives = 110/133 (82.71%), Query Frame = 2
Query:  230 PSFRVSASSMSSIHAPESASRTSFLDRRESG-FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            P+ R   ++M+ +  P SA+  +FL+RRES   LHFVKY GLGNDFI+VDNR+S  P++TPE+A KLCDRNFG+GADGVIF MPGVNG DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENL G  SF +HT
Sbjct:   38 PTARRCVAAMA-VSTPRSAAAAAFLERRESERALHFVKYQGLGNDFIMVDNRDSAVPKVTPEEAAKLCDRNFGVGADGVIFVMPGVNGADYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGTHSFKIHT 169          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_ORYSI (Putative diaminopimelate epimerase, chloroplastic OS=Oryza sativa subsp. indica GN=DAPF PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 7.416e-50
Identity = 94/133 (70.68%), Postives = 110/133 (82.71%), Query Frame = 2
Query:  230 PSFRVSASSMSSIHAPESASRTSFLDRRESG-FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            P+ R   ++M+ +  P SA+  +FL+RRES   LHFVKY GLGNDFI++DNR+S  P++TPE+A KLCDRNFG+GADGVIF MPGVNG DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENL G  SF +HT
Sbjct:   41 PTARRCVAAMA-VSTPRSAAAAAFLERRESERALHFVKYQGLGNDFIMMDNRDSAVPKVTPEEAAKLCDRNFGVGADGVIFVMPGVNGADYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGTHSFKIHT 172          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_TRIEI (Diaminopimelate epimerase OS=Trichodesmium erythraeum (strain IMS101) GN=dapF PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 4.079e-40
Identity = 75/98 (76.53%), Postives = 85/98 (86.73%), Query Frame = 2
Query:  332 FVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            F KYHGLGNDFIL+DNR+  +P +TPEQA +LCDRNFGIGADGVIFA+PGV  TDYTMRIFNSDGSEPEMCGNG+RC A+FIAELEN N K  + +HT
Sbjct:    5 FTKYHGLGNDFILIDNRHQLQPILTPEQAIELCDRNFGIGADGVIFALPGVKQTDYTMRIFNSDGSEPEMCGNGIRCLAKFIAELEN-NNKTKYNIHT 101          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_SYNY3 (Diaminopimelate epimerase OS=Synechocystis sp. (strain PCC 6803) GN=dapF PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.187e-39
Identity = 74/100 (74.00%), Postives = 88/100 (88.00%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            L F KYHGLGNDFILVDNR STEP +TP+QA++LCDR+FGIGADGVIFA+PG  GTDYTMRIFNSDGSEPEMCGNG+RC A+F+A+LE +  K ++ +HT
Sbjct:    3 LSFSKYHGLGNDFILVDNRQSTEPCLTPDQAQQLCDRHFGIGADGVIFALPGQGGTDYTMRIFNSDGSEPEMCGNGIRCLAKFLADLEGVEEK-TYRIHT 101          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_NOSP7 (Diaminopimelate epimerase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=dapF PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.005e-38
Identity = 73/101 (72.28%), Postives = 87/101 (86.14%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLN-GKQSFTVHT 625
            + F KYHGLGNDFIL+DNR+S+ P +TPEQA +LCDR+FGIGADGVIFA+PG NGTDYTMRIFNSDGSEPEMCGNG+RC A F+A+LE  +  K S+ +HT
Sbjct:    3 IEFTKYHGLGNDFILIDNRSSSLPVLTPEQAIQLCDRHFGIGADGVIFALPGENGTDYTMRIFNSDGSEPEMCGNGIRCLAGFLADLEGQSRNKDSYRIHT 103          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF2_ANASP (Diaminopimelate epimerase 2 OS=Anabaena sp. (strain PCC 7120) GN=dapF2 PE=3 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 1.005e-38
Identity = 72/101 (71.29%), Postives = 86/101 (85.15%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLN-GKQSFTVHT 625
            + F KYHGLGNDFIL+DNR S  P ITPE+A ++CDR+FGIGADGVIFA+PG NGTDYTMRIFNSDGSEPEMCGNG+RC A F+A+LE L+  K ++ +HT
Sbjct:    3 IEFTKYHGLGNDFILIDNRASKTPAITPEKAVEMCDRHFGIGADGVIFALPGENGTDYTMRIFNSDGSEPEMCGNGIRCLAAFLADLEGLSRNKDTYRIHT 103          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_SYNP6 (Diaminopimelate epimerase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=dapF PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 9.403e-37
Identity = 70/95 (73.68%), Postives = 81/95 (85.26%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQS 610
            L F KYHGLGNDFILVDNR S EPR+TPEQA ++CDRNFG+GADGVIFA+PG   +DY MRIFNSDGSEPEMCGNG+RC A+F++EL+   G QS
Sbjct:    3 LQFAKYHGLGNDFILVDNRESGEPRLTPEQAVQVCDRNFGVGADGVIFALPGSGDSDYVMRIFNSDGSEPEMCGNGIRCLAKFLSELD--GGAQS 95          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_SYNE7 (Diaminopimelate epimerase OS=Synechococcus elongatus (strain PCC 7942) GN=dapF PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 9.403e-37
Identity = 70/95 (73.68%), Postives = 81/95 (85.26%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQS 610
            L F KYHGLGNDFILVDNR S EPR+TPEQA ++CDRNFG+GADGVIFA+PG   +DY MRIFNSDGSEPEMCGNG+RC A+F++EL+   G QS
Sbjct:    3 LQFAKYHGLGNDFILVDNRESGEPRLTPEQAVQVCDRNFGVGADGVIFALPGSGDSDYVMRIFNSDGSEPEMCGNGIRCLAKFLSELD--GGAQS 95          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_SYNP2 (Diaminopimelate epimerase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=dapF PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.095e-36
Identity = 71/101 (70.30%), Postives = 82/101 (81.19%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGK-QSFTVHT 625
            L F KY GLGNDFIL+DNR  T P +TPEQA +LCDR+FGIGADGVIFA+PG  G DYTMRIFNSDGSEPEMCGNG+RC ARFI  LE  N   +++++HT
Sbjct:    3 LEFTKYQGLGNDFILLDNRQQTTPLVTPEQAIQLCDRHFGIGADGVIFALPGQAGADYTMRIFNSDGSEPEMCGNGIRCLARFIDHLEGGNAPGKTYSIHT 103          
The following BLAST results are available for this feature:
BLAST of FC876448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 318
Match NameE-valueIdentityDescription
DAPF_ARATH2.153e-5762.92Diaminopimelate epimerase, chloroplastic OS=Arabid... [more]
DAPF_ORYSJ3.329e-5071.43Putative diaminopimelate epimerase, chloroplastic ... [more]
DAPF_ORYSI7.416e-5070.68Putative diaminopimelate epimerase, chloroplastic ... [more]
DAPF_TRIEI4.079e-4076.53Diaminopimelate epimerase OS=Trichodesmium erythra... [more]
DAPF_SYNY31.187e-3974.00Diaminopimelate epimerase OS=Synechocystis sp. (st... [more]
DAPF_NOSP71.005e-3872.28Diaminopimelate epimerase OS=Nostoc punctiforme (s... [more]
DAPF2_ANASP1.005e-3871.29Diaminopimelate epimerase 2 OS=Anabaena sp. (strai... [more]
DAPF_SYNP69.403e-3773.68Diaminopimelate epimerase OS=Synechococcus sp. (st... [more]
DAPF_SYNE79.403e-3773.68Diaminopimelate epimerase OS=Synechococcus elongat... [more]
DAPF_SYNP22.095e-3670.30Diaminopimelate epimerase OS=Synechococcus sp. (st... [more]

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Properties
Property NameValue
Genbank descriptionC32004H07EF DevOvary1 Citrus clementina cDNA clone C32004H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876448 ID=FC876448; Name=FC876448; organism=Citrus clementina; type=EST; length=625bp
GACTGTATCACACAAACTAAACCAACCACCGCATTTGACATTACCGCGAC
CAAGAGCAGAAACAGAAAAGCCGTCAAAGCAAGCATCGAGCATGGCCATA
ACCACCACGCGCTCACTCTCCGTCACGCCCGTAACTCGCCGCTCTGCCAC
TCCAATCAATCCTCTTCGATCCTCCTCTTTATCTTATTCGTTGACTCGAC
CATTCAGTTCCAATTTGACTCTCAAAGTCCCTAGCTTCCGCGTCTCGGCA
TCTTCTATGAGCAGCATTCACGCTCCGGAGAGCGCTTCGCGAACCTCTTT
TCTTGACCGCAGAGAGAGCGGCTTCCTTCATTTCGTCAAGTACCATGGCC
TCGGCAACGACTTCATTTTGGTTGATAACAGGAATTCTACGGAACCTAGG
ATAACTCCGGAGCAAGCGGAGAAGCTGTGTGATCGGAATTTTGGCATTGG
GGCCGATGGAGTGATCTTCGCCATGCCTGGAGTCAATGGCACTGATTATA
CAATGAGAATTTTCAATTCTGATGGTAGCGAGCCAGAGATGTGTGGCAAT
GGAGTTCGATGCTTTGCCAGATTCATTGCTGAGCTTGAAAATTTAAATGG
GAAGCAAAGTTTCACTGTCCACACT
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