FC876451

Overview
NameFC876451
Unique NameFC876451
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length705
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876451 vs. ExPASy Swiss-Prot
Match: MGP_ARATH (Zinc finger protein MAGPIE OS=Arabidopsis thaliana GN=MGP PE=1 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 5.866e-55
Identity = 89/113 (78.76%), Postives = 98/113 (86.73%), Query Frame = 1
Query:    1 VCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKEVKKRVYVCPEKSCVHHDPTRALGDLTGIKKHFCRKHGEXXXXXXXXXXXYAVQSDYKAHSKVCGTKEYKCDCGAVFSR 339
            +CEIC KGFQRDQNLQLHRRGHNLPWKL+QR++KEV+KRVYVCPEKSCVHH PTRALGDLTGIKKHFCRKHGE           YAVQSD+KAHSK CGT+EY+CDCG +FSR
Sbjct:   71 LCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKSCVHHHPTRALGDLTGIKKHFCRKHGEKKWKCEKCAKRYAVQSDWKAHSKTCGTREYRCDCGTIFSR 183          

HSP 2 Score: 32.3426 bits (72), Expect = 5.866e-55
Identity = 16/30 (53.33%), Postives = 20/30 (66.67%), Query Frame = 2
Query:  437 RRDSFITHRAFFDRYADKGERQSSE*RTKS 526
            RRDSFITHRAF D  A++  R ++    KS
Sbjct:  183 RRDSFITHRAFCDALAEETARLNAASHLKS 212          
BLAST of FC876451 vs. ExPASy Swiss-Prot
Match: NUC_ARATH (Zinc finger protein NUTCRACKER OS=Arabidopsis thaliana GN=NUC PE=2 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 1.537e-52
Identity = 85/113 (75.22%), Postives = 97/113 (85.84%), Query Frame = 1
Query:    1 VCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKEVKKRVYVCPEKSCVHHDPTRALGDLTGIKKHFCRKHGEXXXXXXXXXXXYAVQSDYKAHSKVCGTKEYKCDCGAVFSR 339
            +CE+C KGFQRDQNLQLHRRGHNLPWKL+QR++KEV+KRVYVCPEK+CVHH  +RALGDLTGIKKHFCRKHGE           YAVQSD+KAHSK CGT+EY+CDCG +FSR
Sbjct:   67 LCEVCGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHSSRALGDLTGIKKHFCRKHGEKKWTCEKCAKRYAVQSDWKAHSKTCGTREYRCDCGTIFSR 179          

HSP 2 Score: 30.4166 bits (67), Expect = 1.537e-52
Identity = 13/18 (72.22%), Postives = 15/18 (83.33%), Query Frame = 2
Query:  437 RRDSFITHRAFFDRYADK 490
            RRDSFITHRAF D  A++
Sbjct:  179 RRDSFITHRAFCDALAEE 196          
BLAST of FC876451 vs. ExPASy Swiss-Prot
Match: JKD_ARATH (Zinc finger protein JACKDAW OS=Arabidopsis thaliana GN=JKD PE=1 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.176e-51
Identity = 85/114 (74.56%), Postives = 96/114 (84.21%), Query Frame = 1
Query:    1 VCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKEV-KKRVYVCPEKSCVHHDPTRALGDLTGIKKHFCRKHGEXXXXXXXXXXXYAVQSDYKAHSKVCGTKEYKCDCGAVFSR 339
            VCEICNKGFQRDQNLQLHRRGHNLPWKL+QRS +EV KK+VY+CP K+CVHHD +RALGDLTGIKKH+ RKHGE           YAVQSD+KAH+K CGT+EYKCDCG +FSR
Sbjct:   83 VCEICNKGFQRDQNLQLHRRGHNLPWKLKQRSKQEVIKKKVYICPIKTCVHHDASRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHAKTCGTREYKCDCGTLFSR 196          

HSP 2 Score: 34.6538 bits (78), Expect = 2.176e-51
Identity = 15/24 (62.50%), Postives = 18/24 (75.00%), Query Frame = 2
Query:  437 RRDSFITHRAFFDRYADKGERQSS 508
            R+DSFITHRAF D   ++G R SS
Sbjct:  196 RKDSFITHRAFCDALTEEGARMSS 219          
BLAST of FC876451 vs. ExPASy Swiss-Prot
Match: STOP1_ARATH (Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 OS=Arabidopsis thaliana GN=STOP1 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.486e-12
Identity = 45/141 (31.91%), Postives = 62/141 (43.97%), Query Frame = 1
Query:    4 CEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKEVKKRV----------YVCPEKSC---VHHDPTRALGDLTGIKKHFCRKH-GEXXXXXXXXXXXYAVQSDYKAHSKVCGTKEYKCDCGAVFSRSLIDSIFWFLLQFLG 384
            C IC KGF+RD NL++H RGH   +K      K  K+ V          Y CP   C     H   + L  +  +K H+ R H  +           ++V +D K H K CG  ++ C CG  FSR   D +F  +  F G
Sbjct:  246 CTICGKGFKRDANLRMHMRGHGDEYKTAAALAKPNKESVPGSEPMLIKRYSCPFLGCKRNKEHKKFQPLKTILCVKNHYKRTHCDKSFTCSRCHTKKFSVIADLKTHEKHCGKNKWLCSCGTTFSRK--DKLFGHIALFQG 384          
The following BLAST results are available for this feature:
BLAST of FC876451 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
MGP_ARATH5.866e-5578.76Zinc finger protein MAGPIE OS=Arabidopsis thaliana... [more]
NUC_ARATH1.537e-5275.22Zinc finger protein NUTCRACKER OS=Arabidopsis thal... [more]
JKD_ARATH2.176e-5174.56Zinc finger protein JACKDAW OS=Arabidopsis thalian... [more]
STOP1_ARATH3.486e-1231.91Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 OS=Ara... [more]
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Properties
Property NameValue
Genbank descriptionC32004H10EF DevOvary1 Citrus clementina cDNA clone C32004H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876451 ID=FC876451; Name=FC876451; organism=Citrus clementina; type=EST; length=705bp
GTGTGTGAAATCTGCAACAAAGGCTTTCAAAGAGACCAGAATTTGCAGCT
TCATCGACGAGGCCATAACTTGCCTTGGAAATTGAGGCAGAGATCGAACA
AAGAAGTGAAGAAGAGAGTTTATGTTTGTCCAGAAAAGTCTTGTGTTCAT
CACGATCCCACTAGAGCTTTAGGTGATCTTACTGGTATCAAGAAGCACTT
TTGTAGAAAGCACGGGGAAAAGAAGTGGAAATGTGACAAGTGTTCTAAGA
AATATGCTGTGCAGTCTGATTATAAAGCACACTCCAAAGTTTGTGGCACT
AAAGAGTACAAATGCGATTGTGGGGCTGTATTTTCCAGGTCTTTGATAGA
TTCAATTTTCTGGTTTTTATTGCAGTTTTTGGGCGATTTAGTTCTGTAAA
TTGAAGTTTCTTTGTTTTCATTTATTCTGTGCACGTAGGAGGGATAGCTT
CATAACTCACAGAGCTTTCTTTGATAGATATGCTGACAAAGGAGAGCGCC
AAAGTTCAGAGTGAAGAACCAAATCTAATTGAGGGAATGGTGAAGCCGAA
CACAGAATCCGACCCGAAAGTTCAGCCCGTTGATTCTTCTACTTCGACAC
CACCAACGGCAGTTCTGGCACCAGCGCTCACAAAGTCAACTGCTGCTGTA
TCTTCCTCGGTTTCGCCAGGGCAGAGTTCAGGTATGAATGAGCCAAATGA
GATTT
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