FC876451
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC876451 vs. ExPASy Swiss-Prot
Match: MGP_ARATH (Zinc finger protein MAGPIE OS=Arabidopsis thaliana GN=MGP PE=1 SV=1) HSP 1 Score: 203.371 bits (516), Expect = 5.866e-55 Identity = 89/113 (78.76%), Postives = 98/113 (86.73%), Query Frame = 1 Query: 1 VCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKEVKKRVYVCPEKSCVHHDPTRALGDLTGIKKHFCRKHGEXXXXXXXXXXXYAVQSDYKAHSKVCGTKEYKCDCGAVFSR 339 +CEIC KGFQRDQNLQLHRRGHNLPWKL+QR++KEV+KRVYVCPEKSCVHH PTRALGDLTGIKKHFCRKHGE YAVQSD+KAHSK CGT+EY+CDCG +FSR Sbjct: 71 LCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKSCVHHHPTRALGDLTGIKKHFCRKHGEKKWKCEKCAKRYAVQSDWKAHSKTCGTREYRCDCGTIFSR 183 HSP 2 Score: 32.3426 bits (72), Expect = 5.866e-55 Identity = 16/30 (53.33%), Postives = 20/30 (66.67%), Query Frame = 2 Query: 437 RRDSFITHRAFFDRYADKGERQSSE*RTKS 526 RRDSFITHRAF D A++ R ++ KS Sbjct: 183 RRDSFITHRAFCDALAEETARLNAASHLKS 212
BLAST of FC876451 vs. ExPASy Swiss-Prot
Match: NUC_ARATH (Zinc finger protein NUTCRACKER OS=Arabidopsis thaliana GN=NUC PE=2 SV=1) HSP 1 Score: 197.208 bits (500), Expect = 1.537e-52 Identity = 85/113 (75.22%), Postives = 97/113 (85.84%), Query Frame = 1 Query: 1 VCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKEVKKRVYVCPEKSCVHHDPTRALGDLTGIKKHFCRKHGEXXXXXXXXXXXYAVQSDYKAHSKVCGTKEYKCDCGAVFSR 339 +CE+C KGFQRDQNLQLHRRGHNLPWKL+QR++KEV+KRVYVCPEK+CVHH +RALGDLTGIKKHFCRKHGE YAVQSD+KAHSK CGT+EY+CDCG +FSR Sbjct: 67 LCEVCGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHSSRALGDLTGIKKHFCRKHGEKKWTCEKCAKRYAVQSDWKAHSKTCGTREYRCDCGTIFSR 179 HSP 2 Score: 30.4166 bits (67), Expect = 1.537e-52 Identity = 13/18 (72.22%), Postives = 15/18 (83.33%), Query Frame = 2 Query: 437 RRDSFITHRAFFDRYADK 490 RRDSFITHRAF D A++ Sbjct: 179 RRDSFITHRAFCDALAEE 196
BLAST of FC876451 vs. ExPASy Swiss-Prot
Match: JKD_ARATH (Zinc finger protein JACKDAW OS=Arabidopsis thaliana GN=JKD PE=1 SV=1) HSP 1 Score: 189.119 bits (479), Expect = 2.176e-51 Identity = 85/114 (74.56%), Postives = 96/114 (84.21%), Query Frame = 1 Query: 1 VCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKEV-KKRVYVCPEKSCVHHDPTRALGDLTGIKKHFCRKHGEXXXXXXXXXXXYAVQSDYKAHSKVCGTKEYKCDCGAVFSR 339 VCEICNKGFQRDQNLQLHRRGHNLPWKL+QRS +EV KK+VY+CP K+CVHHD +RALGDLTGIKKH+ RKHGE YAVQSD+KAH+K CGT+EYKCDCG +FSR Sbjct: 83 VCEICNKGFQRDQNLQLHRRGHNLPWKLKQRSKQEVIKKKVYICPIKTCVHHDASRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHAKTCGTREYKCDCGTLFSR 196 HSP 2 Score: 34.6538 bits (78), Expect = 2.176e-51 Identity = 15/24 (62.50%), Postives = 18/24 (75.00%), Query Frame = 2 Query: 437 RRDSFITHRAFFDRYADKGERQSS 508 R+DSFITHRAF D ++G R SS Sbjct: 196 RKDSFITHRAFCDALTEEGARMSS 219
BLAST of FC876451 vs. ExPASy Swiss-Prot
Match: STOP1_ARATH (Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 OS=Arabidopsis thaliana GN=STOP1 PE=2 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 3.486e-12 Identity = 45/141 (31.91%), Postives = 62/141 (43.97%), Query Frame = 1 Query: 4 CEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKEVKKRV----------YVCPEKSC---VHHDPTRALGDLTGIKKHFCRKH-GEXXXXXXXXXXXYAVQSDYKAHSKVCGTKEYKCDCGAVFSRSLIDSIFWFLLQFLG 384 C IC KGF+RD NL++H RGH +K K K+ V Y CP C H + L + +K H+ R H + ++V +D K H K CG ++ C CG FSR D +F + F G Sbjct: 246 CTICGKGFKRDANLRMHMRGHGDEYKTAAALAKPNKESVPGSEPMLIKRYSCPFLGCKRNKEHKKFQPLKTILCVKNHYKRTHCDKSFTCSRCHTKKFSVIADLKTHEKHCGKNKWLCSCGTTFSRK--DKLFGHIALFQG 384 The following BLAST results are available for this feature:
BLAST of FC876451 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 4
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC876451 ID=FC876451; Name=FC876451; organism=Citrus clementina; type=EST; length=705bpback to top |