FC876462

Overview
NameFC876462
Unique NameFC876462
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length842
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC876462_ssr404 microsatellite FC876462_ssr404:404..415. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig13960 contig Ccv1_Contig13960:6..850. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876462 vs. ExPASy Swiss-Prot
Match: WRK17_ARATH (Probable WRKY transcription factor 17 OS=Arabidopsis thaliana GN=WRKY17 PE=1 SV=2)

HSP 1 Score: 201.06 bits (510), Expect = 6.605e-51
Identity = 120/240 (50.00%), Postives = 144/240 (60.00%), Query Frame = 2
Query:  131 MAVELMGFPKRMMEDQTAIQEAATQGIKSMEHLIRLMSHHQSSNHVDCSDLTDLTVSKFKKVISLLNRTGHARFRRGPVHXXXXXXXXXXXXXXXXGNSPHXXXXXXXXXXXXXXXXXXXXSYVQSQPHSLTLDFTKPSLFSGNVKSTE-LEXXXXXXXXXXXXXXXXXAITGDGSVSNGKQGGSSIFL--APQAPAVSAGKPPLAAQPYKKRCQDHKDHSDDLSGKFSGSTSGNNKCHC 841
            M V++M  PK  MEDQTAIQEAA+QG+KSMEHLIR++S+     +VDCS++TD TVSKFKKVISLLNR+GHARFRRGPVH                 +S                      S+VQ+   S+TLDFT+PS+F    KS+E +E                 AITGDGSVS     GSSIFL  AP  P  S+GKPPL+  PY+KRC +H DHS+  SGK SG  SGN KCHC
Sbjct:    1 MTVDIMRLPK--MEDQTAIQEAASQGLKSMEHLIRVLSNRPEERNVDCSEITDFTVSKFKKVISLLNRSGHARFRRGPVHSPP--------------SSSVPPPVKVTTPAPTQISAPAPVSFVQANQQSVTLDFTRPSVFGAKTKSSEVVEFAKESFSVSSNSSFMSSAITGDGSVSK----GSSIFLAPAPAVPVTSSGKPPLSGLPYRKRCFEH-DHSEGFSGKISG--SGNGKCHC 217          
BLAST of FC876462 vs. ExPASy Swiss-Prot
Match: WRK11_ARATH (Probable WRKY transcription factor 11 OS=Arabidopsis thaliana GN=WRKY11 PE=1 SV=2)

HSP 1 Score: 197.593 bits (501), Expect = 7.303e-50
Identity = 119/240 (49.58%), Postives = 139/240 (57.92%), Query Frame = 2
Query:  131 MAVELMGFPKRMMEDQTAIQEAATQGIKSMEHLIRLMSHHQSSNH-VDCSDLTDLTVSKFKKVISLLNRTGHARFRRGPVHXXXXXXXXXXXXXXXXGNSPHXXXXXXXXXXXXXXXXXXXXSYVQSQPHSLTLDFTKPSLFSGNVKSTELEXXXXXXXXXXXXXXXXXAITGDGSVSNGKQGGSSIFL--APQAPAVSAGKPPLAAQPYKKRCQDHKDHSDDLSGKFSGSTSGNNKCHC 841
            MAV+LM FPK  ++DQTAIQEAA+QG++SMEHLIR++S+     H VDCS++TD TVSKFK VISLLNRTGHARFRRGPVH                   P                       +   P S+TLDF+KPS+F    KS ELE                 AITGDGSVSNGK     IFL  AP  P  S+GKPPLA  PY+KRC +H +HS+  SGK SGS  G  KCHC
Sbjct:    1 MAVDLMRFPK--IDDQTAIQEAASQGLQSMEHLIRVLSNRPEQQHNVDCSEITDFTVSKFKTVISLLNRTGHARFRRGPVHSTSSAASQKLQSQIVKNTQPE----------APIVRTTTNHPQIVPPPSSVTLDFSKPSIFGTKAKSAELEFSKENFSVSLNSSFMSSAITGDGSVSNGK-----IFLASAPLQPVNSSGKPPLAGHPYRKRCLEH-EHSESFSGKVSGSAYG--KCHC 220          
The following BLAST results are available for this feature:
BLAST of FC876462 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
WRK17_ARATH6.605e-5150.00Probable WRKY transcription factor 17 OS=Arabidops... [more]
WRK11_ARATH7.303e-5049.58Probable WRKY transcription factor 11 OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAN2CA11RM1 EHR Citrus clementina cDNA clone KN0AAN2CA11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876462 ID=FC876462; Name=FC876462; organism=Citrus clementina; type=EST; length=842bp
GCACGAGGCCTCCACCCTCGCAGCCTCAGCCTTAAGTTTTACTTTTTCAA
AGGGTTTCGTCGAATGACATCTTGAGGCTTTTCCAAATTGCTCTCCTTTG
GTAGCAGAAACTTTTTCGTTTTTCTAAATCATGGCGGTGGAGCTGATGGG
ATTTCCAAAAAGGATGATGGAAGATCAGACGGCGATACAAGAAGCTGCAA
CGCAAGGGATCAAAAGCATGGAGCACCTGATCCGTCTCATGTCTCATCAC
CAATCCTCGAATCACGTTGACTGCTCGGACCTCACCGATCTCACCGTCTC
TAAGTTCAAAAAAGTCATTTCCCTGCTCAACCGAACCGGTCACGCCCGGT
TCAGGCGCGGGCCGGTTCACTCTTCGCCTTCATCTTCATCTGCATCTGCG
CCAGCCGCCGCCGCCTCAGGCAACTCTCCGCACACACAGACCTTAACTCT
TACTCCGCCTGCTCCTACGATGGCTGTCGCTCCCTCTACGGCGAGTTACG
TCCAGTCACAGCCGCACAGTCTGACTCTTGATTTTACAAAACCTAGTTTG
TTTAGCGGAAACGTCAAGAGCACTGAGCTCGAGTTTTCCAAAGACAGCTT
CTGTGTGTCGTCGAACTCGTCCTTCATGTCCTCTGCTATCACCGGAGACG
GCAGCGTTTCGAACGGGAAGCAAGGAGGATCTTCGATCTTCCTGGCGCCA
CAAGCTCCTGCTGTTTCCGCTGGAAAGCCGCCGCTCGCGGCTCAGCCTTA
CAAGAAGAGGTGTCAAGATCATAAAGATCATTCCGATGATCTTTCCGGCA
AGTTCTCCGGCTCCACCTCTGGCAACAACAAGTGTCACTGCT
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