FC876463

Overview
NameFC876463
Unique NameFC876463
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length717
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10428 contig Ccv1_Contig10428:2..718. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876463 vs. ExPASy Swiss-Prot
Match: INT1_ARATH (Probable inositol transporter 1 OS=Arabidopsis thaliana GN=INT1 PE=2 SV=1)

HSP 1 Score: 316.235 bits (809), Expect = 1.083e-85
Identity = 158/237 (66.67%), Postives = 181/237 (76.37%), Query Frame = 1
Query:   10 VPGTWRWMLGVSAVPAIIHFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRXXXXXXXXXXXXXXXXXINTVMYYSPTIVQMAGFQSNQXXXXXXXXXXGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFI-XXXXXXXXXVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSSTVN 717
            VPGTWRWMLGVS VPA+I F+LMLFMPESPRWLFMK+ K +AI VL++ YDI+RLEDEIDHLSAA EEE ++K+TV YLDVF+SKE+R                 INTVMYYSPTIVQMAGF SNQ            NA GT+VGIY IDH GRKKLALSSL GVIISL++LS +F           +YGW+AV+GLALYI FFAPGMGPVPWT+NSE+YP+QYRGICGGMS+TVN
Sbjct:  186 VPGTWRWMLGVSGVPAVIQFILMLFMPESPRWLFMKNRKAEAIQVLARTYDISRLEDEIDHLSAAEEEEKQRKRTVGYLDVFRSKELRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFHSNQLALFLSLIVAAMNAAGTVVGIYFIDHCGRKKLALSSLFGVIISLLILSVSFFKQSETSSDGGLYGWLAVLGLALYIVFFAPGMGPVPWTVNSEIYPQQYRGICGGMSATVN 422          
BLAST of FC876463 vs. ExPASy Swiss-Prot
Match: INT2_ARATH (Probable inositol transporter 2 OS=Arabidopsis thaliana GN=INT2 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.870e-36
Identity = 79/180 (43.89%), Postives = 108/180 (60.00%), Query Frame = 1
Query:   10 VPGTWRWMLGVSAVPAIIHFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKK---KTVRYLDVFKSKEIRXXXXXXXXXXXXXXXXXINTVMYYSPTIVQMAGFQSNQXXXXXXXXXXGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF 540
            V GTWRWMLG++ +PA++ FVLM  +PESPRWL+ K  +E+A  +L +IY    +E EI  L  + E E+ ++   + +  + + K+K +R                 INTVMYYSPTIVQ+AGF SN+          G NA G+I+ IY ID  GRKKL + SL GVIISL +L+  F
Sbjct:  183 VTGTWRWMLGIAGIPALLQFVLMFTLPESPRWLYRKGREEEAKAILRRIYSAEDVEQEIRALKDSVETEILEEGSSEKINMIKLCKAKTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLAGFASNRTALLLSLVTAGLNAFGSIISIYFIDRIGRKKLLIISLFGVIISLGILTGVF 362          

HSP 2 Score: 78.5666 bits (192), Expect = 3.800e-14
Identity = 30/48 (62.50%), Postives = 41/48 (85.42%), Query Frame = 1
Query:  574 YGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSSTVN 717
            +GW A++GL LYI FF+PGMG VPW +NSE+YP ++RGICGG+++T N
Sbjct:  452 FGWFALLGLGLYIIFFSPGMGTVPWIVNSEIYPLRFRGICGGIAATAN 499          
BLAST of FC876463 vs. ExPASy Swiss-Prot
Match: INT4_ARATH (Inositol transporter 4 OS=Arabidopsis thaliana GN=INT4 PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.622e-31
Identity = 70/182 (38.46%), Postives = 102/182 (56.04%), Query Frame = 1
Query:   13 PGTWRWMLGVSAVPAIIHFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTV------RYLDVFKSKEIRXXXXXXXXXXXXXXXXXINTVMYYSPTIVQMAGFQSNQXXXXXXXXXXGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF 540
            PGTWRWMLGV+ VPAI+ FVLML +PESPRWL+ K    ++  +L +IY    +E E++ L  + E E   +  +      +    F +  +R                 INTVMYYSP+IVQ AG+ SN+          G NA+G+IV +  +D +GR+KL + S+ G+I  L++L+  F
Sbjct:  183 PGTWRWMLGVAGVPAIVQFVLMLSLPESPRWLYRKDRIAESRAILERIYPADEVEAEMEALKLSVEAEKADEAIIGDSFSAKLKGAFGNPVVRRGLAAGITVQVAQQFVGINTVMYYSPSIVQFAGYASNKTAMALSLITSGLNALGSIVSMMFVDRYGRRKLMIISMFGIIACLIILATVF 364          
BLAST of FC876463 vs. ExPASy Swiss-Prot
Match: INT3_ARATH (Probable inositol transporter 3 OS=Arabidopsis thaliana GN=INT3 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.218e-30
Identity = 71/182 (39.01%), Postives = 99/182 (54.40%), Query Frame = 1
Query:   13 PGTWRWMLGVSAVPAIIHFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTV------RYLDVFKSKEIRXXXXXXXXXXXXXXXXXINTVMYYSPTIVQMAGFQSNQXXXXXXXXXXGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF 540
            PGTWRWMLGVSA+PAII F LML +PESPRWL+    K ++  +L +IY    +E EI  L  +   E   +  +      +      +  +R                 INTVMYYSPTI+Q AG+ SN+          G NAVG++V +  +D +GR+KL + S+ G+I  LV+L+  F
Sbjct:  182 PGTWRWMLGVSAIPAIIQFCLMLTLPESPRWLYRNDRKAESRDILERIYPAEMVEAEIAALKESVRAETADEDIIGHTFSDKLRGALSNPVVRHGLAAGITVQVAQQFVGINTVMYYSPTILQFAGYASNKTAMALALITSGLNAVGSVVSMMFVDRYGRRKLMIISMFGIITCLVILAAVF 363          
BLAST of FC876463 vs. ExPASy Swiss-Prot
Match: CSBC_BACSU (Probable metabolite transport protein csbC OS=Bacillus subtilis GN=csbC PE=1 SV=3)

HSP 1 Score: 125.176 bits (313), Expect = 3.541e-28
Identity = 77/231 (33.33%), Postives = 115/231 (49.78%), Query Frame = 1
Query:   22 WRWMLGVSAVPAIIHFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRXXXXXXXXXXXXXXXXXINTVMYYSPTIVQMAGFQSNQXXXXXXXXXXGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFIXXXXXXXXXVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSSTV 714
            WRWM+G++AVPA++  + + FMPESPRWL  +  +E+A  +++  +D   +E E   L+   + E  KK+T   L V K+K IR                 INTV+YY+PTI   AG  ++             N +  I  + LID  GRKKL +    G+ +SL  LS   +            W+ V+ L +YI F+    GPV W L  E++P + RG   G ++ V
Sbjct:  162 WRWMVGLAAVPAVLLLIGIAFMPESPRWLVKRGSEEEARRIMNITHDPKDIEME---LAEMKQGEAEKKETT--LGVLKAKWIRPMLLIGVGLAIFQQAVGINTVIYYAPTIFTKAGLGTSASALGTMGIGI-LNVIMCITAMILIDRVGRKKLLIWGSVGITLSLAALSGVLLTLGLSAST---AWMTVVFLGVYIVFYQATWGPVVWVLMPELFPSKARGAATGFTTLV 383          
BLAST of FC876463 vs. ExPASy Swiss-Prot
Match: YWTG_BACSU (Putative metabolite transport protein ywtG OS=Bacillus subtilis GN=ywtG PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.653e-26
Identity = 73/229 (31.88%), Postives = 112/229 (48.91%), Query Frame = 1
Query:   22 WRWMLGVSAVPAIIHFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRXXXXXXXXXXXXXXXXXINTVMYYSPTIVQMAGFQSNQXXXXXXXXXXGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFIXXXXXXXXXVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSS 708
            WRWMLG++AVP+++  + +LFMPESPRWLF   ++ KA  +L K+     ++ EI  +  A +++    K     ++F    +R                  NT++YY+P      GF  N             N + T+V I +ID  GRK L L   AG++ISL++L+   +            W  VI L ++I  FA   GPV W +  E++P   RGI  G+S+
Sbjct:  161 WRWMLGLAAVPSLLLLIGILFMPESPRWLFTNGEESKAKKILEKLRGTKDIDQEIHDIKEAEKQDEGGLK-----ELF-DPWVRPALIAGLGLAFLQQFIGTNTIIYYAPKTFTNVGF-GNSASILGTVGIGTVNVLMTLVAIKIIDKIGRKPLLLFGNAGMVISLIVLA---LVNLFFDNTPAASWTTVICLGVFIVVFAVSWGPVVWVMLPELFPLHVRGIGTGVST 379          
BLAST of FC876463 vs. ExPASy Swiss-Prot
Match: MYCT_MOUSE (Proton myo-inositol cotransporter OS=Mus musculus GN=Slc2a13 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.163e-25
Identity = 59/176 (33.52%), Postives = 98/176 (55.68%), Query Frame = 1
Query:   22 WRWMLGVSAVPAIIHFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYL--DVFKSKEIRXXXXXXXXXXXXXXXXXINTVMYYSPTIVQMAGFQSNQXXXXXXXXXXGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFI 543
            WR+MLG++A+PA+I F+  LF+PESPRWL  K   +KA  +LS++     +++E D +  + EEE ++      +   +      R                 INT+MYYS TI+QM+G + ++           TN + T+VG++L++  GR+KL   SLAG  ++L++L+  F+
Sbjct:  208 WRYMLGLAAIPAVIQFLGFLFLPESPRWLIQKGQTQKARRILSQMRGNQTIDEEYDSIRNSIEEEEKEATAAGPIICRMLSYPPTRRALVVGCGLQMFQQLSGINTIMYYSATILQMSGVEDDRLAIWLASITAFTNFIFTLVGVWLVEKVGRRKLTFGSLAGTTVALIILALGFL 383          
BLAST of FC876463 vs. ExPASy Swiss-Prot
Match: MYCT_RAT (Proton myo-inositol cotransporter OS=Rattus norvegicus GN=Slc2a13 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.392e-24
Identity = 59/176 (33.52%), Postives = 97/176 (55.11%), Query Frame = 1
Query:   22 WRWMLGVSAVPAIIHFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYL--DVFKSKEIRXXXXXXXXXXXXXXXXXINTVMYYSPTIVQMAGFQSNQXXXXXXXXXXGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFI 543
            WR+MLG++A+PA+I F+  LF+PESPRWL  K   +KA  +LS++     +++E D +  + EEE ++      +   +      R                 INT+MYYS TI+QM+G + ++           TN + T+VG++L++  GR+KL   SLAG  ++L +L+  F+
Sbjct:  208 WRYMLGLAAIPAVIQFLGFLFLPESPRWLIQKGQTQKARRILSQMRGNQTIDEEYDSIRNSIEEEEKEASAAGPIICRMLSYPPTRRALAVGCGLQMFQQLSGINTIMYYSATILQMSGVEDDRLAIWLASITAFTNFIFTLVGVWLVEKVGRRKLTFGSLAGTTVALTILALGFL 383          
BLAST of FC876463 vs. ExPASy Swiss-Prot
Match: MYCT_HUMAN (Proton myo-inositol cotransporter OS=Homo sapiens GN=SLC2A13 PE=1 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 2.375e-24
Identity = 60/176 (34.09%), Postives = 96/176 (54.55%), Query Frame = 1
Query:   22 WRWMLGVSAVPAIIHFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVR--YLDVFKSKEIRXXXXXXXXXXXXXXXXXINTVMYYSPTIVQMAGFQSNQXXXXXXXXXXGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFI 543
            WR+MLG++AVPA+I F   LF+PESPRWL  K   +KA  +LS++     +++E D +    EEE ++  +       +      R                 INT+MYYS TI+QM+G + ++           TN + T+VG++L++  GR+KL   SLAG  ++L++L+  F+
Sbjct:  219 WRYMLGLAAVPAVIQFFGFLFLPESPRWLIQKGQTQKARRILSQMRGNQTIDEEYDSIKNNIEEEEKEVGSAGPVICRMLSYPPTRRALIVGCGLQMFQQLSGINTIMYYSATILQMSGVEDDRLAIWLASVTAFTNFIFTLVGVWLVEKVGRRKLTFGSLAGTTVALIILALGFV 394          
BLAST of FC876463 vs. ExPASy Swiss-Prot
Match: GTR1_LEIDO (Membrane transporter D1 OS=Leishmania donovani PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.479e-23
Identity = 66/233 (28.33%), Postives = 113/233 (48.50%), Query Frame = 1
Query:   22 WRWMLGVSAVPAIIH-FVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRXXXXXXXXXXXXXXXXXINTVMYYSPTIVQMAGFQSNQXXXXXXXXXXGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFIXXXXXXXXXVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSSTVN 717
            WR  +G+ A+PA++  F L+ F+PESPRWL  K   ++A  V  K         E+D       +EL   + + Y  +  ++++R                 INT+MYYS  I+  AGF+               NA+ T V I+ +D FGR+++ L S+ G ++ LV+++             V G + +  LA+++A +APG+G +PW +  E++P   R     +++  N
Sbjct:  163 WRVAIGIGALPAVVQAFCLLFFLPESPRWLLSKGHADRAKAVADKF--------EVDLCEFQEGDELPSVR-IDYRPLM-ARDMRFRVVLSSGLQIIQQFSGINTIMYYSSVILYDAGFRDAIMPVVLSIPLAFMNALFTAVAIFTVDRFGRRRMLLISVFGCLVLLVVIAIIGFFIGTRISYSVGGGLFLALLAVFLALYAPGIGCIPWVIMGEIFPTHLRTSAASVATMAN 385          
The following BLAST results are available for this feature:
BLAST of FC876463 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
INT1_ARATH1.083e-8566.67Probable inositol transporter 1 OS=Arabidopsis tha... [more]
INT2_ARATH7.870e-3643.89Probable inositol transporter 2 OS=Arabidopsis tha... [more]
INT4_ARATH7.622e-3138.46Inositol transporter 4 OS=Arabidopsis thaliana GN=... [more]
INT3_ARATH2.218e-3039.01Probable inositol transporter 3 OS=Arabidopsis tha... [more]
CSBC_BACSU3.541e-2833.33Probable metabolite transport protein csbC OS=Baci... [more]
YWTG_BACSU5.653e-2631.88Putative metabolite transport protein ywtG OS=Baci... [more]
MYCT_MOUSE8.163e-2533.52Proton myo-inositol cotransporter OS=Mus musculus ... [more]
MYCT_RAT1.392e-2433.52Proton myo-inositol cotransporter OS=Rattus norveg... [more]
MYCT_HUMAN2.375e-2434.09Proton myo-inositol cotransporter OS=Homo sapiens ... [more]
GTR1_LEIDO4.479e-2328.33Membrane transporter D1 OS=Leishmania donovani PE=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN2CA12RM1 EHR Citrus clementina cDNA clone KN0AAN2CA12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876463 ID=FC876463; Name=FC876463; organism=Citrus clementina; type=EST; length=717bp
GCACGAGGGGTCCCTGGAACATGGAGATGGATGCTTGGAGTATCAGCTGT
GCCAGCTATCATTCACTTTGTCTTAATGCTTTTTATGCCGGAGTCTCCTA
GATGGCTTTTCATGAAGAGTGACAAAGAAAAAGCCATTTTGGTTCTTTCT
AAGATTTATGACATTGCTCGGTTAGAAGATGAAATTGATCACCTTTCAGC
TGCTGCAGAGGAAGAACTCCGAAAAAAGAAAACTGTCAGATACTTGGATG
TTTTTAAATCCAAAGAAATCAGACTTGCATTTCTGGCTGGGGCTGGACTT
CAGGCATTTCAACAGTTCACTGGTATCAACACAGTCATGTACTACAGCCC
GACAATTGTCCAAATGGCTGGCTTCCAGTCCAACCAGCTAGCGCTTCTCC
TATCTCTTGCTGTTGCTGGTACAAATGCAGTTGGCACAATTGTTGGAATT
TATCTTATTGACCATTTTGGAAGGAAAAAGTTGGCCCTCTCTAGCTTAGC
TGGTGTTATTATATCCCTCGTCTTACTCTCTTGGGCATTCATCAGTGGAT
CATCTGCTTCTTCAAGTGGAGTCTATGGTTGGATTGCAGTCATCGGGTTA
GCCCTATATATTGCTTTCTTTGCACCTGGAATGGGACCTGTGCCATGGAC
TCTGAACTCTGAGGTGTATCCTGAGCAATACCGTGGAATTTGTGGAGGTA
TGTCATCTACTGTGAAC
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