FC876468

Overview
NameFC876468
Unique NameFC876468
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length683
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10367 contig Ccv1_Contig10367:1..683. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876468 vs. ExPASy Swiss-Prot
Match: RAP21_ARATH (Ethylene-responsive transcription factor RAP2-1 OS=Arabidopsis thaliana GN=RAP2-1 PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.477e-36
Identity = 81/132 (61.36%), Postives = 92/132 (69.70%), Query Frame = 2
Query:  260 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFPELIFQEDD------LRDVSAASIRKKATEVGAKVDALQAALHAAXXXXXXXXXXXXXXIRLSEKPDLNKFPESSD 637
            Y+GIR RKWGKWVAEIREPNKRSR+WLGSYTT IAAARAYD AVFYLRGPSARLNFP+L+ QE+D        D+ AA IR+KA EVGA+VDAL A+   +                   KPDLN+ PES D
Sbjct:   31 YRGIRRRKWGKWVAEIREPNKRSRLWLGSYTTDIAAARAYDVAVFYLRGPSARLNFPDLLLQEEDHLSAATTADMPAALIREKAAEVGARVDALLASAAPSMAHSTPPVI----------KPDLNQIPESGD 152          
BLAST of FC876468 vs. ExPASy Swiss-Prot
Match: ERF10_ARATH (Ethylene-responsive transcription factor ERF010 OS=Arabidopsis thaliana GN=ERF010 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.097e-35
Identity = 75/93 (80.65%), Postives = 83/93 (89.25%), Query Frame = 2
Query:  260 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFPELIFQED-DLRDVSAASIRKKATEVGAKVDALQAAL 535
            YKGIRMRKWGKWVAEIREPNKRSR+WLGSY+TP AAARAYDTAVFYLRGP+ARLNFPEL+  E     D+SAA+IRKKATEVGA+VDAL  A+
Sbjct:   21 YKGIRMRKWGKWVAEIREPNKRSRLWLGSYSTPEAAARAYDTAVFYLRGPTARLNFPELLPGEKFSDEDMSAATIRKKATEVGAQVDALGTAV 113          
BLAST of FC876468 vs. ExPASy Swiss-Prot
Match: ERF11_ARATH (Ethylene-responsive transcription factor ERF011 OS=Arabidopsis thaliana GN=ERF011 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 4.672e-35
Identity = 79/128 (61.72%), Postives = 91/128 (71.09%), Query Frame = 2
Query:  260 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFPELIFQEDDLRDVSAASIRKKATEVGAKVDALQAALHAAXXXXXXXXXXXXXXIRLSEKPDLNKFPESSDED 643
            +KGIRMRKWGKWVAEIREPNKRSR+WLGSY+TP AAARAYDTAVFYLRGP+A LNFPEL+       D+SAA+IRKKATEVGA+VDA+ A +                   L E  DLNK P+  + D
Sbjct:   21 FKGIRMRKWGKWVAEIREPNKRSRLWLGSYSTPEAAARAYDTAVFYLRGPTATLNFPELL-PCTSAEDMSAATIRKKATEVGAQVDAIGATVVQNNKRRRVFSQKRDFGGGLLELVDLNKLPDPENLD 147          
BLAST of FC876468 vs. ExPASy Swiss-Prot
Match: ERF08_ARATH (Ethylene-responsive transcription factor ERF008 OS=Arabidopsis thaliana GN=ERF008 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.359e-34
Identity = 83/139 (59.71%), Postives = 91/139 (65.47%), Query Frame = 2
Query:  260 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFPELIFQEDDLR------DVSAASIRKKATEVGAKVDALQAALHAAXXXXXXXXXXXXXXIRLS-----EKPDLNKFPESSDED 643
            YKGIRMRKWGKWVAEIREPNKRSRIWLGSY TP AAARAYDTAVFYLRGPSARLNFPEL+             D+SAA IR+KA EVGA+VDAL A +                  R S     E+ DLNK P+  + D
Sbjct:   28 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYATPEAAARAYDTAVFYLRGPSARLNFPELLAGLTVSNGGGRGGDLSAAYIRRKAAEVGAQVDALGATVVVNTGGENRGDYEKIENCRKSGNGSLERVDLNKLPDPENSD 166          
BLAST of FC876468 vs. ExPASy Swiss-Prot
Match: RA210_ARATH (Ethylene-responsive transcription factor RAP2-10 OS=Arabidopsis thaliana GN=RAP2-10 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 8.810e-34
Identity = 75/101 (74.26%), Postives = 82/101 (81.19%), Query Frame = 2
Query:  260 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFPELIF----------QEDDLRDVSAASIRKKATEVGAKVDALQAA 532
            YKGIRMRKWGKWVAEIREPNKRSRIWLGSY+TP AAARAYDTAVFYLRGPSARLNFPEL+             +   D+SAA IR+KA EVGA+VDAL+AA
Sbjct:   30 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPEAAARAYDTAVFYLRGPSARLNFPELLAGVTVTGGGGGGVNGGGDMSAAYIRRKAAEVGAQVDALEAA 130          
BLAST of FC876468 vs. ExPASy Swiss-Prot
Match: RAP29_ARATH (Ethylene-responsive transcription factor RAP2-9 OS=Arabidopsis thaliana GN=RAP2-9 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.372e-33
Identity = 77/129 (59.69%), Postives = 87/129 (67.44%), Query Frame = 2
Query:  260 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFPELIFQEDD-----LRDVSAASIRKKATEVGAKVDALQAALHAAXXXXXXXXXXXXXXIRLSEKPDLNKFPES 631
            YKGIRMRKWGKWVAEIREPNKRSRIWLGSY T +AAARAYDTAVFYLRGPSARLNFPE +F++ +       D+S   IRKKA EVGA+VDA                       R+ E  D+NK PE+
Sbjct:   36 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYKTAVAAARAYDTAVFYLRGPSARLNFPEEVFKDGNGGEGLGGDMSPTLIRKKAAEVGARVDA-----------------ELRLENRMVENLDMNKLPEA 147          
BLAST of FC876468 vs. ExPASy Swiss-Prot
Match: ERF21_ARATH (Ethylene-responsive transcription factor ERF021 OS=Arabidopsis thaliana GN=ERF021 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.751e-19
Identity = 46/80 (57.50%), Postives = 54/80 (67.50%), Query Frame = 2
Query:  260 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFPELIFQEDDLRDVSAASIRKKATE 499
            Y+G+R RKWGKWV+EIREP  ++RIWLGS+ TP  AA AYD A F+ RG  ARLNFPEL        D S+ SIR    E
Sbjct:   24 YRGVRKRKWGKWVSEIREPGTKNRIWLGSFETPEMAATAYDVAAFHFRGREARLNFPELASSLPRPADSSSDSIRMAVHE 103          
BLAST of FC876468 vs. ExPASy Swiss-Prot
Match: ERF13_ARATH (Ethylene-responsive transcription factor ERF013 OS=Arabidopsis thaliana GN=ERF013 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.366e-18
Identity = 45/86 (52.33%), Postives = 58/86 (67.44%), Query Frame = 2
Query:  260 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFPEL------IFQEDDLRDVSAASIRKKATE 499
            YKG+RMR WG WV EIR PN+++RIWLGSY+T  AAARAYD A+  L+GP A LNFP +      +   D+   +S  SI+K A +
Sbjct:   43 YKGVRMRSWGSWVTEIRAPNQKTRIWLGSYSTAEAAARAYDAALLCLKGPKANLNFPNITTTSPFLMNIDEKTLLSPKSIQKVAAQ 128          
BLAST of FC876468 vs. ExPASy Swiss-Prot
Match: ERF39_ARATH (Ethylene-responsive transcription factor ERF039 OS=Arabidopsis thaliana GN=ERF039 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.042e-18
Identity = 42/85 (49.41%), Postives = 59/85 (69.41%), Query Frame = 2
Query:  260 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFPELIFQ-----EDDLRDVSAASIRKKATE 499
            ++G+RMR+WGKWV+EIREP K+SRIWLG+++TP  AARA+D A   ++G SA LNFPEL +        D +D+  A+    A +
Sbjct:   40 FRGVRMRQWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALAIKGGSAHLNFPELAYHLPRPASADPKDIQEAAAAAAAVD 124          
BLAST of FC876468 vs. ExPASy Swiss-Prot
Match: ERF17_ARATH (Ethylene-responsive transcription factor ERF017 OS=Arabidopsis thaliana GN=ERF017 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.042e-18
Identity = 44/78 (56.41%), Postives = 56/78 (71.79%), Query Frame = 2
Query:  260 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFPELIFQEDDLRDVSAASIRKKA 493
            YKG+R RKWGKWV+EIR PN R RIWLGSY TP  AARA+D A++ LRG +A+ NFP+        R++S + IR+ A
Sbjct:   12 YKGVRKRKWGKWVSEIRLPNSRERIWLGSYDTPEKAARAFDAALYCLRGNNAKFNFPDNPPVISGGRNLSRSEIREAA 89          
The following BLAST results are available for this feature:
BLAST of FC876468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 121
Match NameE-valueIdentityDescription
RAP21_ARATH2.477e-3661.36Ethylene-responsive transcription factor RAP2-1 OS... [more]
ERF10_ARATH2.097e-3580.65Ethylene-responsive transcription factor ERF010 OS... [more]
ERF11_ARATH4.672e-3561.72Ethylene-responsive transcription factor ERF011 OS... [more]
ERF08_ARATH1.359e-3459.71Ethylene-responsive transcription factor ERF008 OS... [more]
RA210_ARATH8.810e-3474.26Ethylene-responsive transcription factor RAP2-10 O... [more]
RAP29_ARATH4.372e-3359.69Ethylene-responsive transcription factor RAP2-9 OS... [more]
ERF21_ARATH2.751e-1957.50Ethylene-responsive transcription factor ERF021 OS... [more]
ERF13_ARATH1.366e-1852.33Ethylene-responsive transcription factor ERF013 OS... [more]
ERF39_ARATH3.042e-1849.41Ethylene-responsive transcription factor ERF039 OS... [more]
ERF17_ARATH3.042e-1856.41Ethylene-responsive transcription factor ERF017 OS... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN2CB05RM1 EHR Citrus clementina cDNA clone KN0AAN2CB05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876468 ID=FC876468; Name=FC876468; organism=Citrus clementina; type=EST; length=683bp
GCACGAGGCGGCACGAGGCACATATATAAGTGACTTGTACAGCATCTGCG
GCAATAAAAGTGGAGTCGCCTTAATTATTTTTGGGTTGGGCATCGGTATG
TGTCCCTCAGAACTCACAACAAGAAGAAAACTTTGATTAATTATCTACGA
AAACGACATGGAAGGAGGCGGGTGCTGCAGCACTTCGACTTCAACGAAAA
GCCCAGAGAAGCGGAAGCCAAGGCAGCAGCGGCAACACCAACAGCAGCAG
GAAAAGCCGTACAAGGGGATAAGGATGAGGAAGTGGGGGAAGTGGGTCGC
TGAAATTAGAGAGCCTAACAAGAGATCCAGAATCTGGCTTGGTTCTTACA
CCACGCCTATAGCCGCCGCACGTGCCTACGACACGGCCGTCTTCTATCTC
CGGGGCCCTTCCGCTCGTCTTAACTTCCCCGAATTGATTTTCCAAGAAGA
CGATCTTCGAGACGTTTCTGCCGCTTCAATACGCAAGAAAGCTACCGAAG
TTGGCGCTAAGGTCGACGCTTTACAAGCTGCTCTCCATGCTGCTAATTCA
GAATCTGAATCCAATTCCAATTCCAATTTCAATTCCATTCGATTGTCCGA
GAAGCCTGATTTAAACAAGTTTCCAGAGAGTTCTGATGAAGATTGATAAC
ACAAAATACTTGCAAGCTCACAATTACCTACCC
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