FC876475

Overview
NameFC876475
Unique NameFC876475
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876475 vs. ExPASy Swiss-Prot
Match: LET12_SOLLC (Homeobox protein knotted-1-like LET12 OS=Solanum lycopersicum GN=LET12 PE=2 SV=1)

HSP 1 Score: 290.426 bits (742), Expect = 1.936e-81
Identity = 144/190 (75.79%), Postives = 163/190 (85.79%), Query Frame = 2
Query:   11 NNTASNDHGRAEDWETVKCKAEIVGHPLYEQLLSAHVSRLRIATPVDQLPKIDAQLSRSRDVLAKYSAVANGRV-LDDKELDQFVTHYVLLLYSFKEQLQQLVRVHAMEAVMACWDLEQSLQSLTGVSPGEGTGATMSDDDEYHVDSDTNFFDGSLDGPDSMGFGPLVPTESERSLTERVMHELKHELKQ 577
            NN  +N++     WE  KCKA+I+ HPLY+QLLSAHVS LRIATPVDQLP+IDAQL++S++V+AKYS +  G+  LDDK+LDQF+THYVLLL SFKEQLQQ VRVHAMEAVMACW+LEQSLQSLTGV+PGEGTGATMSDDD+   DSDTNF DG  DGPDSMGFGPLVPTESERSL ERV  ELKHELKQ
Sbjct:  145 NNNNNNNNEEENSWEREKCKADILNHPLYDQLLSAHVSCLRIATPVDQLPRIDAQLAQSQNVVAKYSVLGQGQPPLDDKDLDQFMTHYVLLLSSFKEQLQQHVRVHAMEAVMACWELEQSLQSLTGVAPGEGTGATMSDDDDDQADSDTNFLDGGFDGPDSMGFGPLVPTESERSLMERVRQELKHELKQ 334          

HSP 2 Score: 33.8834 bits (76), Expect = 1.936e-81
Identity = 15/20 (75.00%), Postives = 17/20 (85.00%), Query Frame = 1
Query:  649 KGYNENIVDIKEEILRNRRA 708
            +GY E IVDI+EEILR RRA
Sbjct:  334 QGYKEKIVDIREEILRKRRA 353          
BLAST of FC876475 vs. ExPASy Swiss-Prot
Match: KNAP3_MALDO (Homeobox protein knotted-1-like 3 OS=Malus domestica PE=2 SV=1)

HSP 1 Score: 271.166 bits (692), Expect = 1.137e-75
Identity = 135/188 (71.81%), Postives = 156/188 (82.98%), Query Frame = 2
Query:   14 NTASNDHGRAEDWETVKCKAEIVGHPLYEQLLSAHVSRLRIATPVDQLPKIDAQLSRSRDVLAKYSAVANGRVLDDKELDQFVTHYVLLLYSFKEQLQQLVRVHAMEAVMACWDLEQSLQSLTGVSPGEGTGATMSDDDEYHVDSDTNFFDGSLDGPDSMGFGPLVPTESERSLTERVMHELKHELKQ 577
            N      G   +W+  + KAEI+ HPLYE LLSAHV+ LRIATPVDQLP+IDAQL++S++V+AKYSA+ NG V DDKELDQF+ +YVLLL SFKEQLQQ VRVHAMEAVMACW++EQSLQSLTGVSPGEGT ATMSDD++  VDSD N FD  ++G DSMGFGPL+PTESERSL ERV  ELKHELKQ
Sbjct:  150 NEGGGGDGGVMNWQNARHKAEILAHPLYEPLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSALGNGMVGDDKELDQFMRNYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTSATMSDDEDDQVDSDANLFDEGMEGHDSMGFGPLIPTESERSLMERVRQELKHELKQ 337          

HSP 2 Score: 33.8834 bits (76), Expect = 1.137e-75
Identity = 15/20 (75.00%), Postives = 17/20 (85.00%), Query Frame = 1
Query:  649 KGYNENIVDIKEEILRNRRA 708
            +GY E IVDI+EEILR RRA
Sbjct:  337 QGYKEKIVDIREEILRKRRA 356          
BLAST of FC876475 vs. ExPASy Swiss-Prot
Match: KNAT3_ARATH (Homeobox protein knotted-1-like 3 OS=Arabidopsis thaliana GN=KNAT3 PE=1 SV=1)

HSP 1 Score: 261.536 bits (667), Expect = 8.695e-73
Identity = 139/199 (69.85%), Postives = 157/199 (78.89%), Query Frame = 2
Query:    8 GNNTASNDHGRAE------DWETVKCKAEIVGHPLYEQLLSAHVSRLRIATPVDQLPKIDAQLSRSRDVLAKYSAV---ANGRVLDDKELDQFVTHYVLLLYSFKEQLQQLVRVHAMEAVMACWDLEQSLQSLTGVSPGEGTGATMSDDDEYHVDSDTNFFDGSLDGPDSMGFGPLVPTESERSLTERVMHELKHELKQ 577
            G     ND G A        W+  + KAEI+ HPLYEQLLSAHV+ LRIATPVDQLP+IDAQL++S+ V+AKYSA+   A G V DDKELDQF+THYVLLL SFKEQLQQ VRVHAMEAVMACW++EQSLQSLTGVSPGEG GATMSDD++  V+SD N FDG L   D +GFGPL+PTESERSL ERV  ELKHELKQ
Sbjct:  134 GGGENKNDGGGATAADGVVSWQNARHKAEILSHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQHVVAKYSALGAAAQGLVGDDKELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGMGATMSDDEDEQVESDANMFDGGL---DVLGFGPLIPTESERSLMERVRQELKHELKQ 329          

HSP 2 Score: 33.8834 bits (76), Expect = 8.695e-73
Identity = 15/20 (75.00%), Postives = 17/20 (85.00%), Query Frame = 1
Query:  649 KGYNENIVDIKEEILRNRRA 708
            +GY E IVDI+EEILR RRA
Sbjct:  329 QGYKEKIVDIREEILRKRRA 348          
BLAST of FC876475 vs. ExPASy Swiss-Prot
Match: KNAT4_ARATH (Homeobox protein knotted-1-like 4 OS=Arabidopsis thaliana GN=KNAT4 PE=1 SV=3)

HSP 1 Score: 260.381 bits (664), Expect = 1.930e-72
Identity = 134/193 (69.43%), Postives = 157/193 (81.35%), Query Frame = 2
Query:    8 GNNTASNDHGRAEDWETVKCKAEIVGHPLYEQLLSAHVSRLRIATPVDQLPKIDAQLSRSRDVLAKYSAVANGRVL---DDKELDQFVTHYVLLLYSFKEQLQQLVRVHAMEAVMACWDLEQSLQSLTGVSPGEGTGATMSDDDEYHVDSDTNFFDGSLDGPDSMGFGPLVPTESERSLTERVMHELKHELKQ 577
            G  +   +   AE W+  + KAEI+ HPLYEQLLSAHV+ LRIATPVDQLP+IDAQL++S++V+AKYS +   + L   DDKELD F+THYVLLL SFKEQLQQ VRVHAMEAVMACW++EQSLQS TGVSPGEGTGATMS+D++  V+SD + FDGSLDG   +GFGPLVPTESERSL ERV  ELKHELKQ
Sbjct:  104 GEESMIGEKKEAERWQNARHKAEILSHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSTLEAAQGLLAGDDKELDHFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSFTGVSPGEGTGATMSEDEDEQVESDAHLFDGSLDG---LGFGPLVPTESERSLMERVRQELKHELKQ 293          

HSP 2 Score: 33.8834 bits (76), Expect = 1.930e-72
Identity = 15/20 (75.00%), Postives = 17/20 (85.00%), Query Frame = 1
Query:  649 KGYNENIVDIKEEILRNRRA 708
            +GY E IVDI+EEILR RRA
Sbjct:  293 QGYKEKIVDIREEILRKRRA 312          
BLAST of FC876475 vs. ExPASy Swiss-Prot
Match: KNOSD_ORYSJ (Homeobox protein knotted-1-like 13 OS=Oryza sativa subsp. japonica GN=OSH45 PE=2 SV=2)

HSP 1 Score: 252.292 bits (643), Expect = 1.131e-69
Identity = 131/191 (68.59%), Postives = 154/191 (80.63%), Query Frame = 2
Query:    8 GNNTASNDHGRAEDWETVKCKAEIVGHPLYEQLLSAHVSRLRIATPVDQLPKIDAQLSRSRDVLAKYSAVANGRVLDD-KELDQFVTHYVLLLYSFKEQLQQLVRVHAMEAVMACWDLEQSLQSLTGVSPGEGTGATMSDDDEYHVDSDTNFFDGSLDGPDSMGFGPLVPTESERSLTERVMHELKHELKQ 577
            G +  +   G   + +  +CKAEI+ HPLYEQLLSAHV+ LRIATPVDQLP+IDAQL++S+ V+AKYSA+A     DD +ELDQF+THYVLLL SFKEQLQQ VRVHAMEAVMACW+LEQ+LQSLTG SPGEGTGATMSD ++   DS+ N +D SLDG D+MGFG  +PTESERSL ERV  ELKHELKQ
Sbjct:   89 GEDAVAAAMGGGGEADAARCKAEILAHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQGVVAKYSALAAAAAGDDGRELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWELEQNLQSLTGASPGEGTGATMSDGEDDQADSEANMYDPSLDGADNMGFG--LPTESERSLMERVRQELKHELKQ 277          

HSP 2 Score: 32.7278 bits (73), Expect = 1.131e-69
Identity = 13/20 (65.00%), Postives = 17/20 (85.00%), Query Frame = 1
Query:  649 KGYNENIVDIKEEILRNRRA 708
            +GY E ++DI+EEILR RRA
Sbjct:  277 QGYKEKLIDIREEILRKRRA 296          
BLAST of FC876475 vs. ExPASy Swiss-Prot
Match: KNAT5_ARATH (Homeobox protein knotted-1-like 5 OS=Arabidopsis thaliana GN=KNAT5 PE=1 SV=2)

HSP 1 Score: 235.343 bits (599), Expect = 2.965e-64
Identity = 122/180 (67.78%), Postives = 143/180 (79.44%), Query Frame = 2
Query:   44 EDWETVKCKAEIVGHPLYEQLLSAHVSRLRIATPVDQLPKIDAQLSRSRDVLAKYSAVANGRVLDDKELDQFVTHYVLLLYSFKEQLQQLVRVHAMEAVMACWDLEQSLQSLTGVSPGEGTGATMSDD-DEYHVDSDTNFFDGSLDGPDS-MGFGPLVPTESERSLTERVMHELKHELKQ 577
            EDW +   KA I+ HP+YEQLL+AHV+ LR+ATPVDQ+P+IDAQLS+   V AKYS +  G V+D+KELD F++HYV+LL SFKEQLQ  V VHAMEA+ ACW++EQSLQSLTGVSP E  G TMSDD D+  V+S+ N FDGSLDG D  MGFGPLVPTE ERSL ERV  ELKHELKQ
Sbjct:  111 EDWRSASYKAAILRHPMYEQLLAAHVACLRVATPVDQIPRIDAQLSQLHTVAAKYSTL--GVVVDNKELDHFMSHYVVLLCSFKEQLQHHVCVHAMEAITACWEIEQSLQSLTGVSPSESNGKTMSDDEDDNQVESEVNMFDGSLDGSDCLMGFGPLVPTERERSLMERVKKELKHELKQ 288          

HSP 2 Score: 31.5722 bits (70), Expect = 2.965e-64
Identity = 13/20 (65.00%), Postives = 17/20 (85.00%), Query Frame = 1
Query:  649 KGYNENIVDIKEEILRNRRA 708
            +G+ E IVDI+EEI+R RRA
Sbjct:  288 QGFKEKIVDIREEIMRKRRA 307          
BLAST of FC876475 vs. ExPASy Swiss-Prot
Match: KNOS2_ORYSJ (Homeobox protein knotted-1-like 2 OS=Oryza sativa subsp. japonica GN=HOS58 PE=2 SV=2)

HSP 1 Score: 226.868 bits (577), Expect = 3.527e-62
Identity = 118/171 (69.01%), Postives = 136/171 (79.53%), Query Frame = 2
Query:   68 KAEIVGHPLYEQLLSAHVSRLRIATPVDQLPKIDAQLS-RSRDVLAKYSAVANGRVLDDKELDQFVTHYVLLLYSFKEQLQQLVRVHAMEAVMACWDLEQSLQSLTGVSPGEGTGATMSDDDEYHVDSDTNFFDGSLDGPDSMGFGPLVPTESERSLTERVMHELKHELKQ 577
            KA +  HPLYE+LL AHV+ LR+ATPVDQLP+IDAQ++ R   + A  +A A G     +ELD F+THYVLLL SFKEQLQQ VRVHAMEAVM CW+LEQSLQSLTG SPGEGTGATMSDD++  VDS+ N FDG+ DG D MGFGPL+ TE ERSL ERV HELK+ELKQ
Sbjct:   43 KAAVAAHPLYERLLEAHVACLRVATPVDQLPRIDAQIAARPPPLAAASAAAAAGGPSGGEELDLFMTHYVLLLCSFKEQLQQHVRVHAMEAVMGCWELEQSLQSLTGASPGEGTGATMSDDEDNQVDSEANMFDGN-DGSDGMGFGPLMLTEGERSLVERVRHELKNELKQ 212          

HSP 2 Score: 33.113 bits (74), Expect = 3.527e-62
Identity = 14/20 (70.00%), Postives = 17/20 (85.00%), Query Frame = 1
Query:  649 KGYNENIVDIKEEILRNRRA 708
            +GY E +VDI+EEILR RRA
Sbjct:  212 QGYKEKLVDIREEILRKRRA 231          
BLAST of FC876475 vs. ExPASy Swiss-Prot
Match: KNOSB_ORYSJ (Homeobox protein knotted-1-like 11 OS=Oryza sativa subsp. japonica GN=HOS59 PE=2 SV=2)

HSP 1 Score: 221.861 bits (564), Expect = 1.110e-60
Identity = 120/186 (64.52%), Postives = 139/186 (74.73%), Query Frame = 2
Query:   35 GRAEDWETVKCKAEIVGHPLYEQLLSAHVSRLRIATPVDQLPKIDAQLSRSRDVLAKYSAVA-----NGRVLDDKELDQFVTHYVLLLYSFKEQLQQLVRVHAMEAVMACWDLEQSLQSLTGVSPGEGTGATMSDDDEYHVDSDTNFFDGSLDGPDSMGFGPLVPTESERSLTERVMHELKHELKQ 577
            G    WE  + KA I  HPLYE+LL AHV+ LR+ATPVDQLP+IDAQ++     LA  +A A      G     +ELD F+THYVLLL SFKEQLQQ VRVHAMEAVMACW+LEQ+LQSLTG SP EG+GATMSDD++  VDS++N FDG+ DG D MGFGPL+ TE ERSL ERV  ELKHELKQ
Sbjct:   39 GGGGGWE--REKAAIAAHPLYERLLEAHVACLRVATPVDQLPRIDAQIAARPPPLAAATAAAAAAAAGGAPSGGEELDLFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWELEQTLQSLTGASPREGSGATMSDDEDNQVDSESNMFDGN-DGSDGMGFGPLMLTEGERSLVERVRQELKHELKQ 221          

HSP 2 Score: 33.113 bits (74), Expect = 1.110e-60
Identity = 14/20 (70.00%), Postives = 17/20 (85.00%), Query Frame = 1
Query:  649 KGYNENIVDIKEEILRNRRA 708
            +GY E +VDI+EEILR RRA
Sbjct:  221 QGYREKLVDIREEILRKRRA 240          
BLAST of FC876475 vs. ExPASy Swiss-Prot
Match: KNAT7_ARATH (Homeobox protein knotted-1-like 7 OS=Arabidopsis thaliana GN=KNAT7 PE=1 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 8.072e-49
Identity = 103/173 (59.54%), Postives = 127/173 (73.41%), Query Frame = 2
Query:   68 KAEIVGHPLYEQLLSAHVSRLRIATPVDQLPKIDAQLSRSRDVLAKYSAVANGRVLDDKELDQFVTHYVLLLYSFKEQLQQLVRVHAMEAVMACWDLEQSLQSLTGVSPGEGTGATMSDDDE---YHVDSDTNFFDGSLDGPDSMGFGPLVPTESERSLTERVMHELKHELKQ 577
            K EI  HP+YEQLL+AHV+ LR+ATP+DQLP I+AQLS+S  +L  Y++ A G   D  ELD F+  YV++L SFKEQLQQ VRVHA+EAVMAC ++E +L SLTG + GEG+GATMS+D++       SD +  D S  G D  GFGPL+PTESERSL ERV  ELK ELKQ
Sbjct:   30 KGEIATHPMYEQLLAAHVACLRVATPIDQLPIIEAQLSQSHHLLRSYASTAVGYHHDRHELDNFLAQYVMVLCSFKEQLQQHVRVHAVEAVMACREIENNLHSLTGATLGEGSGATMSEDEDDLPMDFSSDNSGVDFS-GGHDMTGFGPLLPTESERSLMERVRQELKLELKQ 201          

HSP 2 Score: 26.9498 bits (58), Expect = 8.072e-49
Identity = 10/20 (50.00%), Postives = 15/20 (75.00%), Query Frame = 1
Query:  649 KGYNENIVDIKEEILRNRRA 708
            +G+   I D++EEI+R RRA
Sbjct:  201 QGFKSRIEDVREEIMRKRRA 220          
BLAST of FC876475 vs. ExPASy Swiss-Prot
Match: HD1_BRANA (Homeobox protein HD1 OS=Brassica napus GN=HD1 PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 1.142e-47
Identity = 104/174 (59.77%), Postives = 129/174 (74.14%), Query Frame = 2
Query:   68 KAEIVGHPLYEQLLSAHVSRLRIATPVDQLPKIDAQLSRSRDVLAKYSAVANGRVLDDK-ELDQFVTHYVLLLYSFKEQLQQLVRVHAMEAVMACWDLEQSLQSLTGVSPGEGTGATMS-DDDEYHVD--SDTNFFDGSLDGPDSMGFGPLVPTESERSLTERVMHELKHELKQ 577
            K EI  HP+Y+QLL+AHV+ LR+ATP+DQLP I+AQLS S  +L  Y++ A G    D+ ELD F+  YV++L SFKEQLQQ VRVHA+EAVMAC ++E +L SLTG + GEG+GATMS D+D+  +D  SD +  D S  G D  GFGPL+PTESERSL ERV  ELK ELKQ
Sbjct:   32 KGEIATHPMYDQLLAAHVACLRVATPIDQLPIIEAQLSHSHHLLRSYASTAVGFSHHDRQELDNFLAQYVMVLCSFKEQLQQHVRVHAVEAVMACREIENNLHSLTGATLGEGSGATMSEDEDDLQMDFSSDNSGVDFS-GGHDMTGFGPLLPTESERSLMERVRQELKLELKQ 204          

HSP 2 Score: 26.9498 bits (58), Expect = 1.142e-47
Identity = 10/20 (50.00%), Postives = 15/20 (75.00%), Query Frame = 1
Query:  649 KGYNENIVDIKEEILRNRRA 708
            +G+   I D++EEI+R RRA
Sbjct:  204 QGFKSRIEDVREEIMRKRRA 223          
The following BLAST results are available for this feature:
BLAST of FC876475 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
LET12_SOLLC1.936e-8175.79Homeobox protein knotted-1-like LET12 OS=Solanum l... [more]
KNAP3_MALDO1.137e-7571.81Homeobox protein knotted-1-like 3 OS=Malus domesti... [more]
KNAT3_ARATH8.695e-7369.85Homeobox protein knotted-1-like 3 OS=Arabidopsis t... [more]
KNAT4_ARATH1.930e-7269.43Homeobox protein knotted-1-like 4 OS=Arabidopsis t... [more]
KNOSD_ORYSJ1.131e-6968.59Homeobox protein knotted-1-like 13 OS=Oryza sativa... [more]
KNAT5_ARATH2.965e-6467.78Homeobox protein knotted-1-like 5 OS=Arabidopsis t... [more]
KNOS2_ORYSJ3.527e-6269.01Homeobox protein knotted-1-like 2 OS=Oryza sativa ... [more]
KNOSB_ORYSJ1.110e-6064.52Homeobox protein knotted-1-like 11 OS=Oryza sativa... [more]
KNAT7_ARATH8.072e-4959.54Homeobox protein knotted-1-like 7 OS=Arabidopsis t... [more]
HD1_BRANA1.142e-4759.77Homeobox protein HD1 OS=Brassica napus GN=HD1 PE=2... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN2CB12RM1 EHR Citrus clementina cDNA clone KN0AAN2CB12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876475 ID=FC876475; Name=FC876475; organism=Citrus clementina; type=EST; length=710bp
CGCACGAGGGAACAACACTGCAAGTAACGACCACGGCAGAGCGGAGGATT
GGGAGACTGTAAAATGTAAAGCCGAGATAGTGGGACACCCATTGTACGAG
CAACTGCTGTCGGCACACGTGTCCCGTTTAAGGATCGCCACCCCAGTTGA
CCAGTTGCCAAAGATTGATGCTCAGTTGTCTCGGTCGCGGGATGTCTTGG
CTAAGTACTCCGCTGTCGCCAATGGACGCGTGCTCGATGATAAAGAGCTC
GATCAATTCGTGACGCATTATGTTCTTTTGCTCTATTCCTTTAAAGAACA
ATTGCAACAACTTGTCCGGGTTCATGCAATGGAAGCGGTAATGGCATGTT
GGGATCTTGAGCAATCTTTACAAAGCTTAACTGGTGTATCTCCTGGTGAA
GGCACTGGTGCAACAATGTCCGATGATGATGAATACCATGTAGACAGTGA
CACAAACTTTTTTGATGGAAGTCTGGATGGACCCGATAGCATGGGATTTG
GTCCTCTTGTTCCGACTGAAAGTGAGAGGTCCTTGACGGAGCGTGTTATG
CACGAACTGAAGCATGAGCTGAAACAGGTGAGAGTGCAAAACCATCTTCA
TTGGTAAACGACTCGATTGATTGTGCAGCTGATGTGTTTTCTGCTTTTAA
GGGTTACAACGAGAATATTGTTGACATTAAGGAAGAAATTCTGCGTAACA
GAAGGGCTGG
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