FC876486

Overview
NameFC876486
Unique NameFC876486
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length720
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10447 contig Ccv1_Contig10447:4..723. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876486 vs. ExPASy Swiss-Prot
Match: IM30_PEA (Membrane-associated 30 kDa protein, chloroplastic OS=Pisum sativum GN=IM30 PE=2 SV=1)

HSP 1 Score: 260.381 bits (664), Expect = 7.108e-69
Identity = 147/211 (69.67%), Postives = 166/211 (78.67%), Query Frame = 1
Query:   94 MAAKSQIVTGF-TMPMTPAPXXXXXXXXXXLCMVKKPLTTSFFNGG-VGALKVTRLRIAPSSRSYCYRQGGGALNTRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKYKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARS 720
            M  K QI +G  + P+ P+             ++KKPL T+ F    V  LK   +RIA   R      GGGA+  RMNLFDR ARVVKSYANA++S+FEDPEKILEQAVLEMNDDL KMRQATAQVLASQKRLENKYKAA+QASE+WYRKAQLALQKGEEDLAREALKRRKS+ADNA++LKAQLDQQK+VV+NLVSNTRLLESKIQEARS
Sbjct:    1 MTTKFQIFSGLPSAPLQPSSS-----------LLKKPLATTLFGTRPVDTLKFRVMRIAKPVR------GGGAIGVRMNLFDRFARVVKSYANALVSTFEDPEKILEQAVLEMNDDLTKMRQATAQVLASQKRLENKYKAAQQASEEWYRKAQLALQKGEEDLAREALKRRKSFADNASSLKAQLDQQKSVVDNLVSNTRLLESKIQEARS 194          
BLAST of FC876486 vs. ExPASy Swiss-Prot
Match: IM30_ARATH (Probable membrane-associated 30 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=At1g65260 PE=1 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 2.795e-65
Identity = 136/210 (64.76%), Postives = 160/210 (76.19%), Query Frame = 1
Query:   94 MAAKSQIVTGFTMPMTPAPXXXXXXXXXXLCMVK-KPLTTSFFNGGVGALKVTRLRIAPSSRSYCYRQGGGALNTRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKYKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARS 720
            MA K+  VTG   P+ P             C ++  PL TSFF    GAL+V  LR+A  +R  C   G GA    MNLF+R +RVVKSYANA++SSFEDPEKILEQ V+EMN DL KMRQATAQVLASQK+L+NKYKAA+Q+S+DWY++AQLAL KG+EDLAREALKRRKS+ADNA ALK QLDQQK VV+NLVSNTRLLESKIQEA++
Sbjct:    1 MALKASPVTGLFPPLRPTASSSPSTSSNRPCSLRILPLRTSFFGNSSGALRVNVLRLACDNRLRC--NGHGAT---MNLFERFSRVVKSYANALISSFEDPEKILEQTVIEMNSDLTKMRQATAQVLASQKQLQNKYKAAQQSSDDWYKRAQLALAKGDEDLAREALKRRKSFADNATALKTQLDQQKGVVDNLVSNTRLLESKIQEAKA 205          
BLAST of FC876486 vs. ExPASy Swiss-Prot
Match: IM30_ORYSJ (Probable membrane-associated 30 kDa protein, chloroplastic OS=Oryza sativa subsp. japonica GN=Os01g0895100 PE=1 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 6.444e-62
Identity = 128/172 (74.42%), Postives = 145/172 (84.30%), Query Frame = 1
Query:  202 LTTSFFNGGVGALKVTRLRIAPSSRSYCYRQGGGALNTRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKYKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEAR 717
            L TSF NG V +L++ ++R +  +R  C          R NL DR +RVVKSYANA+LSSFEDPEKIL+QAVLEMNDDL KMRQATAQVLASQKRLENKYKAAEQAS+DWYR+AQLALQKG+EDLAREALKRRKSYADNA++LKAQLDQQK VV NLVSNTR+LESKI EA+
Sbjct:   27 LRTSFLNGSV-SLRLIQVRQSNVNRFKCN-------GIRSNLLDRFSRVVKSYANAVLSSFEDPEKILDQAVLEMNDDLTKMRQATAQVLASQKRLENKYKAAEQASDDWYRRAQLALQKGDEDLAREALKRRKSYADNASSLKAQLDQQKGVVENLVSNTRVLESKIAEAK 190          
BLAST of FC876486 vs. ExPASy Swiss-Prot
Match: Y617_SYNY3 (Uncharacterized protein sll0617 OS=Synechocystis sp. (strain PCC 6803) GN=sll0617 PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.504e-30
Identity = 67/134 (50.00%), Postives = 93/134 (69.40%), Query Frame = 1
Query:  319 MNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKYKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARS 720
            M LFDRL RVV++  N ++S  EDPEK+LEQAV++M +DLV++RQA A+ +A +KR E +     Q ++ W  +A+LAL  GEE+LAREAL R+KS  D A A + QL QQ+ +  NL  N   LE+KI EA++
Sbjct:    1 MGLFDRLGRVVRANLNDLVSKAEDPEKVLEQAVIDMQEDLVQLRQAVARTIAEEKRTEQRLNQDTQEAKKWEDRAKLALTNGEENLAREALARKKSLTDTAAAYQTQLAQQRTMSENLRRNLAALEAKISEAKT 134          
BLAST of FC876486 vs. ExPASy Swiss-Prot
Match: PSPA_DEIRA (Phage shock protein A homolog OS=Deinococcus radiodurans GN=DR_1473 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.459e-18
Identity = 48/134 (35.82%), Postives = 80/134 (59.70%), Query Frame = 1
Query:  319 MNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKYKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARS 720
            M++FDRL+R++++  N ++S  EDP KI++QA+ +M       R   A  +A   +LE +     + + ++ +KA+ AL+ G EDLAREAL+R +++ D A     Q   Q++ V+ L +  R LE+KI E  S
Sbjct:    1 MSIFDRLSRLLRANVNDMISKAEDPAKIIDQALRDMRSAYADARNEVAGAMAQAAKLEREAGTNSKLAAEYEKKAEEALRGGSEDLAREALRRAQNHKDLAKGFDEQRTVQQSTVDQLKTQLRALEAKIDEMES 134          
BLAST of FC876486 vs. ExPASy Swiss-Prot
Match: PSPA_SHIFL (Phage shock protein A OS=Shigella flexneri GN=pspA PE=3 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.399e-16
Identity = 45/134 (33.58%), Postives = 75/134 (55.97%), Query Frame = 1
Query:  319 MNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKYKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARS 720
            M +F R A +V +  NA+L   EDP+K++   + EM D LV++R  +A+ LA +K+L  + + A     +W  KA+LAL K  EDLAR AL  ++   D   +L+ ++    + +  +      LE+K+ E R+
Sbjct:    1 MGIFSRFADIVNANINALLEKAEDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQASAREVEWQEKAELALLKEREDLARAALIEKQKLTDLIKSLEHEVTLVDDTLARMKKEIGELENKLSETRA 134          
BLAST of FC876486 vs. ExPASy Swiss-Prot
Match: PSPA_ECOLI (Phage shock protein A OS=Escherichia coli (strain K12) GN=pspA PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.399e-16
Identity = 45/134 (33.58%), Postives = 75/134 (55.97%), Query Frame = 1
Query:  319 MNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKYKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARS 720
            M +F R A +V +  NA+L   EDP+K++   + EM D LV++R  +A+ LA +K+L  + + A     +W  KA+LAL K  EDLAR AL  ++   D   +L+ ++    + +  +      LE+K+ E R+
Sbjct:    1 MGIFSRFADIVNANINALLEKAEDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQASAREVEWQEKAELALLKEREDLARAALIEKQKLTDLIKSLEHEVTLVDDTLARMKKEIGELENKLSETRA 134          
BLAST of FC876486 vs. ExPASy Swiss-Prot
Match: PSPA_ECO57 (Phage shock protein A OS=Escherichia coli O157:H7 GN=pspA PE=3 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.399e-16
Identity = 45/134 (33.58%), Postives = 75/134 (55.97%), Query Frame = 1
Query:  319 MNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKYKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARS 720
            M +F R A +V +  NA+L   EDP+K++   + EM D LV++R  +A+ LA +K+L  + + A     +W  KA+LAL K  EDLAR AL  ++   D   +L+ ++    + +  +      LE+K+ E R+
Sbjct:    1 MGIFSRFADIVNANINALLEKAEDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQASAREVEWQEKAELALLKEREDLARAALIEKQKLTDLIKSLEHEVTLVDDTLARMKKEIGELENKLSETRA 134          
BLAST of FC876486 vs. ExPASy Swiss-Prot
Match: PSPA_BACSU (Phage shock protein A homolog OS=Bacillus subtilis GN=ydjF PE=1 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 8.832e-11
Identity = 41/135 (30.37%), Postives = 71/135 (52.59%), Query Frame = 1
Query:  319 MNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKYKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKA-------QLDQQKNVVNNLVSNTRLLESK 702
            M++  R   ++ +  NA+L   E+PEK+++Q +  MN DL K++  TA V+A ++R + +Y   +   E     A  ALQ G E  AR+ L+R+ S     + L+A          Q + + + LVS+   LE++
Sbjct:    1 MSIIGRFKDIMSANINALLDKAENPEKMVDQYLRNMNSDLAKVKAETAAVMAEEQRAKREYHECQADMEKMESYAMKALQAGNESDARKFLERKTSLESKLSELQAANQIAATNAAQMRKMHDKLVSDIGELEAR 135          
The following BLAST results are available for this feature:
BLAST of FC876486 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
IM30_PEA7.108e-6969.67Membrane-associated 30 kDa protein, chloroplastic ... [more]
IM30_ARATH2.795e-6564.76Probable membrane-associated 30 kDa protein, chlor... [more]
IM30_ORYSJ6.444e-6274.42Probable membrane-associated 30 kDa protein, chlor... [more]
Y617_SYNY36.504e-3050.00Uncharacterized protein sll0617 OS=Synechocystis s... [more]
PSPA_DEIRA7.459e-1835.82Phage shock protein A homolog OS=Deinococcus radio... [more]
PSPA_SHIFL2.399e-1633.58Phage shock protein A OS=Shigella flexneri GN=pspA... [more]
PSPA_ECOLI2.399e-1633.58Phage shock protein A OS=Escherichia coli (strain ... [more]
PSPA_ECO572.399e-1633.58Phage shock protein A OS=Escherichia coli O157:H7 ... [more]
PSPA_BACSU8.832e-1130.37Phage shock protein A homolog OS=Bacillus subtilis... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAN2CD01RM1 EHR Citrus clementina cDNA clone KN0AAN2CD01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876486 ID=FC876486; Name=FC876486; organism=Citrus clementina; type=EST; length=720bp
GCACGAGGAATTTCTCGTCTTCTATCCAAAAGCACTCTGAAAACCAATCG
TTCTGTTTCCTGACAATAATTGAACTTGTGGGCATCCCGCAGAATGGCCG
CAAAGTCACAGATAGTTACGGGATTCACCATGCCCATGACACCAGCGCCG
TCCTCTTCTTCCTCGAGCTCTAGCAGCAGTCTCTGCATGGTCAAGAAGCC
CCTCACGACGTCGTTTTTCAACGGCGGAGTGGGAGCTCTAAAAGTTACAA
GGTTAAGGATTGCTCCTTCCAGCCGATCCTATTGTTATAGACAAGGTGGA
GGAGCACTTAATACACGAATGAACCTATTTGATAGGTTAGCAAGAGTTGT
GAAGTCCTATGCAAATGCAATTCTGAGTTCCTTTGAAGATCCAGAGAAGA
TTTTAGAGCAAGCAGTACTTGAAATGAATGATGACTTGGTAAAGATGCGC
CAGGCCACGGCACAAGTGTTGGCATCTCAGAAGCGGTTGGAAAATAAGTA
CAAAGCTGCAGAGCAAGCTTCTGAAGACTGGTATCGCAAAGCACAGCTTG
CTCTTCAAAAAGGGGAAGAAGATCTGGCACGTGAGGCTCTCAAGAGACGC
AAATCTTATGCAGATAATGCTAATGCTTTGAAAGCTCAACTTGATCAACA
AAAGAATGTTGTTAATAACCTTGTTTCTAATACTCGGCTTTTGGAGAGCA
AGATACAGGAGGCAAGATCA
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