FC876490

Overview
NameFC876490
Unique NameFC876490
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1060 contig Ccv1_Contig1060:73..776. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876490 vs. ExPASy Swiss-Prot
Match: PRU1_PRUAR (Major allergen Pru ar 1 OS=Prunus armeniaca PE=1 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.001e-40
Identity = 83/160 (51.88%), Postives = 106/160 (66.25%), Query Frame = -3
Query:  154 MGVLTLNVEDTSTLPPEKLFKLFVLQFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVEGADWKYFKHWVDALDKENKIYNYPAIEGEGDANIPTIDHVSYESKVVGTPDGGSKSTVVIKFYPKPGAEIKEEQVKGGLEKEKGIFKALEAYALANPNA 633
            MGV T   E TS +PPEKLFK F+L  D L+PKV P  VK  E++ GDGG G+IKK  F EG+ + Y KH VD +DK+N  Y+Y  I  EGDA    I++++Y+ K+V +PDGGS       ++ K   EIKEEQVK G EK  G+FK +EAY LANP+A
Sbjct:    1 MGVFTYETEFTSVIPPEKLFKAFILDADNLIPKVAPTAVKGTEILEGDGGVGTIKKVTFGEGSQYAYVKHRVDGIDKDNLSYSYTLI--EGDALSDVIENIAYDIKLVASPDGGSIVKTTSHYHTKGDVEIKEEQVKAGKEKAAGLFKLVEAYLLANPDA 158          
BLAST of FC876490 vs. ExPASy Swiss-Prot
Match: PRU1_PRUAV (Major allergen Pru av 1 OS=Prunus avium GN=PRUA1 PE=1 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.821e-37
Identity = 77/160 (48.12%), Postives = 104/160 (65.00%), Query Frame = -3
Query:  154 MGVLTLNVEDTSTLPPEKLFKLFVLQFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVEGADWKYFKHWVDALDKENKIYNYPAIEGEGDANIPTIDHVSYESKVVGTPDGGSKSTVVIKFYPKPGAEIKEEQVKGGLEKEKGIFKALEAYALANPNA 633
            MGV T   E TS +PP +LFK FVL  D L+PK+ PQ +K+ E++ GDGGPG+IKK  F EG+ + Y KH +D++DKEN  Y+Y  I  EGDA   T++ +SYE+K+V +P GGS       ++ K   EIKEE VK G EK   +FK +E Y   +P+A
Sbjct:    1 MGVFTYESEFTSEIPPPRLFKAFVLDADNLVPKIAPQAIKHSEILEGDGGPGTIKKITFGEGSQYGYVKHKIDSIDKENYSYSYTLI--EGDALGDTLEKISYETKLVASPSGGSIIKSTSHYHTKGNVEIKEEHVKAGKEKASNLFKLIETYLKGHPDA 158          
BLAST of FC876490 vs. ExPASy Swiss-Prot
Match: MAL12_MALDO (Major allergen Mal d 1 OS=Malus domestica PE=1 SV=3)

HSP 1 Score: 146.747 bits (369), Expect = 1.105e-34
Identity = 76/160 (47.50%), Postives = 103/160 (64.38%), Query Frame = -3
Query:  154 MGVLTLNVEDTSTLPPEKLFKLFVLQFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVEGADWKYFKHWVDALDKENKIYNYPAIEGEGDANIPTIDHVSYESKVVGTPDGGSKSTVVIKFYPKPGAEIKEEQVKGGLEKEKGIFKALEAYALANPNA 633
            MGV T   E TS +PP +LFK FVL  D L+PK+ PQ +K+ E++ GDGGPG+IKK  F EG+ + Y KH +D++D+ N  Y Y  I  EGDA   TI+ VSYE+K+V +   GS    +  ++ K   EIKEE VK G EK  G+FK +E+Y   +P+A
Sbjct:    1 MGVYTFENEYTSEIPPPRLFKAFVLDADNLIPKIAPQAIKHAEILEGDGGPGTIKKITFGEGSQYGYVKHKIDSVDEANYSYAYTLI--EGDALTDTIEKVSYETKLVAS-GSGSIIKSISHYHTKGDVEIKEEHVKAGKEKAHGLFKLIESYLKGHPDA 157          
BLAST of FC876490 vs. ExPASy Swiss-Prot
Match: MAL11_MALDO (Major allergen Mal d 1 OS=Malus domestica GN=MALD1 PE=1 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 1.595e-33
Identity = 75/162 (46.30%), Postives = 105/162 (64.81%), Query Frame = -3
Query:  154 MGVLTLNVEDTSTLPPEKLFKLFVLQFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVEGADWKYFKHWVDALDKENKIYNYPAIEGEGDANIPTIDHVSYESKVVGTPDGGSKSTV--VIKFYPKPGAEIKEEQVKGGLEKEKGIFKALEAYALANPNA 633
            MGV T   E TS +PP +LFK FVL  D L+PK+ PQ +K  E++ G+GGPG+IKK  F EG+ + Y KH +D++D+ +  Y+Y  I  EGDA   TI+ +SYE+K+V     GS ST+  +  ++ K   EIKEE VK G EK  G+FK +E+Y   +P+A
Sbjct:    1 MGVYTFENEFTSEIPPSRLFKAFVLDADNLIPKIAPQAIKQAEILEGNGGPGTIKKITFGEGSQYGYVKHRIDSIDEASYSYSYTLI--EGDALTDTIEKISYETKLVAC---GSGSTIKSISHYHTKGNIEIKEEHVKVGKEKAHGLFKLIESYLKDHPDA 157          
BLAST of FC876490 vs. ExPASy Swiss-Prot
Match: PYRC1_PYRCO (Major allergen Pyr c 1 OS=Pyrus communis GN=PYRC1 PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.083e-33
Identity = 75/162 (46.30%), Postives = 106/162 (65.43%), Query Frame = -3
Query:  154 MGVLTLNVEDTSTLPPEKLFKLFVLQFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVEGADWKYFKHWVDALDKENKIYNYPAIEGEGDANIPTIDHVSYESKVVGTPDGGSKSTV--VIKFYPKPGAEIKEEQVKGGLEKEKGIFKALEAYALANPNA 633
            MG+ T   E TS +PP +LFK FVL  D L+PK+ PQ +K+ E++ G+GGPG+IKK  F EG+ + Y KH VD++D+ +  Y Y  I  EGDA   TI+ +SYE+K+V +   GS ST+  +  ++ K   EIKEE VK G EK  G+FK +E+Y   +P+A
Sbjct:    1 MGLYTFENEFTSEIPPPRLFKAFVLDADNLIPKIAPQAIKHAEILEGNGGPGTIKKITFGEGSQYGYVKHRVDSIDEASYSYAYTLI--EGDALTDTIEKISYEAKLVAS---GSGSTIKSISHYHTKGDIEIKEEHVKAGKEKAHGLFKLIESYLKDHPDA 157          
BLAST of FC876490 vs. ExPASy Swiss-Prot
Match: BEV1D_BETVE (Major pollen allergen Bet v 1-D/H OS=Betula verrucosa GN=BETV1D PE=1 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 3.929e-32
Identity = 74/162 (45.68%), Postives = 100/162 (61.73%), Query Frame = -3
Query:  154 MGVLTLNVEDTSTLPPEKLFKLFVLQFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVEGADWKYFKHWVDALDKENKIYNYPAIEG--EGDANIPTIDHVSYESKVVGTPDGGSKSTVVIKFYPKPGAEIKEEQVKGGLEKEKGIFKALEAYALANPNA 633
            MGV    +E TS +P  +LFK F+L  D L+PKV PQ + +VE I G+GGPG+IKK NF EG  +KY K  VD +D  N  YNY  IEG   GD    T++ +S E K+V TPDGG    +  K++ K   E+K EQVK   E  + + +A+E+Y LA+ +A
Sbjct:    1 MGVFNYEIETTSVIPAARLFKAFILDGDNLVPKVAPQAISSVENIEGNGGPGTIKKINFPEGFPFKYVKDRVDEVDHTNFKYNYSVIEGGPVGD----TLEKISNEIKIVATPDGGCVLKISNKYHTKGNHEVKAEQVKASKEMGETLLRAVESYLLAHSDA 158          
BLAST of FC876490 vs. ExPASy Swiss-Prot
Match: BEV1G_BETVE (Major pollen allergen Bet v 1-G OS=Betula verrucosa GN=BETV1G PE=1 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 6.701e-32
Identity = 74/162 (45.68%), Postives = 100/162 (61.73%), Query Frame = -3
Query:  154 MGVLTLNVEDTSTLPPEKLFKLFVLQFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVEGADWKYFKHWVDALDKENKIYNYPAIEG--EGDANIPTIDHVSYESKVVGTPDGGSKSTVVIKFYPKPGAEIKEEQVKGGLEKEKGIFKALEAYALANPNA 633
            MGV     E TS +P  +LFK F+L+ D L+PKV PQ + +VE I G+GGPG+IKK NF EG  +KY K  VD +D  N  YNY  IEG   GD    T++ +S E K+V TPDGG    +  K++ K   E+K EQVK   E  + + +A+E+Y LA+ +A
Sbjct:    1 MGVFNYESETTSVIPAARLFKAFILEGDNLIPKVAPQAISSVENIEGNGGPGTIKKINFPEGFPFKYVKDRVDEVDHTNFKYNYSVIEGGPVGD----TLEKISNEIKIVATPDGGCVLKISNKYHTKGNHEVKAEQVKASKEMGETLLRAVESYLLAHSDA 158          
BLAST of FC876490 vs. ExPASy Swiss-Prot
Match: PR1_MEDSA (Class-10 pathogenesis-related protein 1 OS=Medicago sativa GN=MSPR10-1 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.493e-31
Identity = 68/159 (42.77%), Postives = 100/159 (62.89%), Query Frame = -3
Query:  157 MGVLTLNVEDTSTLPPEKLFKLFVLQFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVEGADWKYFKHWVDALDKENKIYNYPAIEGEGDANIPTIDHVSYESKVVGTPDGGSKSTVVIKFYPKPGAEIKEEQVKGGLEKEKGIFKALEAYALANPN 633
            MGV     E TS + P +L+K  V   D L+PKV+   ++++E++ G+GG G+IKK  FVEG + KY  H VD +D  N  YNY  + G G  +  T++ +S+ESK+   PDGGS + + +K++ K  A   EE++KGG  +  G+FKALE Y LANP+
Sbjct:    1 MGVFNFEDETTSIVAPARLYKALVTDSDNLIPKVI-DAIQSIEIVEGNGGAGTIKKLTFVEGGETKYDLHKVDLVDDVNFAYNYSIVGGGGLPD--TVEKISFESKLSAGPDGGSTAKLTVKYFTKGDAAPSEEEIKGGKARGDGLFKALEGYVLANPD 156          
BLAST of FC876490 vs. ExPASy Swiss-Prot
Match: BEV1A_BETVE (Major pollen allergen Bet v 1-A OS=Betula verrucosa GN=BETVIA PE=1 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 1.950e-31
Identity = 74/162 (45.68%), Postives = 99/162 (61.11%), Query Frame = -3
Query:  154 MGVLTLNVEDTSTLPPEKLFKLFVLQFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVEGADWKYFKHWVDALDKENKIYNYPAIEGE--GDANIPTIDHVSYESKVVGTPDGGSKSTVVIKFYPKPGAEIKEEQVKGGLEKEKGIFKALEAYALANPNA 633
            MGV     E TS +P  +LFK F+L  D L PKV PQ + +VE I G+GGPG+IKK +F EG  +KY K  VD +D  N  YNY  IEG   GD    T++ +S E K+V TPDGGS   +  K++ K   E+K EQVK   E  + + +A+E+Y LA+ +A
Sbjct:    1 MGVFNYETETTSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPEGFPFKYVKDRVDEVDHTNFKYNYSVIEGGPIGD----TLEKISNEIKIVATPDGGSILKISNKYHTKGDHEVKAEQVKASKEMGETLLRAVESYLLAHSDA 158          
BLAST of FC876490 vs. ExPASy Swiss-Prot
Match: BEV1L_BETVE (Major pollen allergen Bet v 1-L OS=Betula verrucosa GN=BETV1L PE=1 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 2.547e-31
Identity = 73/162 (45.06%), Postives = 99/162 (61.11%), Query Frame = -3
Query:  154 MGVLTLNVEDTSTLPPEKLFKLFVLQFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVEGADWKYFKHWVDALDKENKIYNYPAIEG--EGDANIPTIDHVSYESKVVGTPDGGSKSTVVIKFYPKPGAEIKEEQVKGGLEKEKGIFKALEAYALANPNA 633
            MGV     E TS +P  ++FK F+L  D L+PKV PQ + +VE I G+GGPG+IKK NF EG  +KY K  VD +D  N  YNY  IEG   GD    T++ +S E K+V TPDGG    +  K++ K   E+K EQVK   E  + + +A+E+Y LA+ +A
Sbjct:    1 MGVFNYETEATSVIPAARMFKAFILDGDKLVPKVAPQAISSVENIEGNGGPGTIKKINFPEGFPFKYVKDRVDEVDHTNFKYNYSVIEGGPVGD----TLEKISNEIKIVATPDGGCVLKISNKYHTKGNHEVKAEQVKASKEMGETLLRAVESYLLAHSDA 158          
The following BLAST results are available for this feature:
BLAST of FC876490 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
PRU1_PRUAR3.001e-4051.88Major allergen Pru ar 1 OS=Prunus armeniaca PE=1 S... [more]
PRU1_PRUAV1.821e-3748.13Major allergen Pru av 1 OS=Prunus avium GN=PRUA1 P... [more]
MAL12_MALDO1.105e-3447.50Major allergen Mal d 1 OS=Malus domestica PE=1 SV=... [more]
MAL11_MALDO1.595e-3346.30Major allergen Mal d 1 OS=Malus domestica GN=MALD1... [more]
PYRC1_PYRCO2.083e-3346.30Major allergen Pyr c 1 OS=Pyrus communis GN=PYRC1 ... [more]
BEV1D_BETVE3.929e-3245.68Major pollen allergen Bet v 1-D/H OS=Betula verruc... [more]
BEV1G_BETVE6.701e-3245.68Major pollen allergen Bet v 1-G OS=Betula verrucos... [more]
PR1_MEDSA1.493e-3142.77Class-10 pathogenesis-related protein 1 OS=Medicag... [more]
BEV1A_BETVE1.950e-3145.68Major pollen allergen Bet v 1-A OS=Betula verrucos... [more]
BEV1L_BETVE2.547e-3145.06Major pollen allergen Bet v 1-L OS=Betula verrucos... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN2CD05RM1 EHR Citrus clementina cDNA clone KN0AAN2CD05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876490 ID=FC876490; Name=FC876490; organism=Citrus clementina; type=EST; length=704bp
TTTTTTTTTTTTATTTAACCAAAAGCCAATTATATAAATTGGCATATTTG
AAAACAAAGAGACACGACATACGGAAGCCATAAACATGATTATTCATAAT
GTTGCAACAAAGGCGACGCAAGTGCGGTGAAGTGTTGACGTAAAAGCTTA
TACGGCATTGGGGTTTGCCAAGGCATAGGCTTCCAAAGCCTTAAAAATTC
CCTTCTCCTTTTCCAAGCCTCCCTTAACCTGCTCTTCCTTAATCTCGGCA
CCTGGTTTGGGATAAAACTTGATAACAACGGTGCTCTTGCTTCCTCCGTC
AGGGGTGCCCACAACCTTACTCTCATAAGAAACATGATCAATAGTAGGGA
TGTTAGCATCACCCTCACCTTCAATTGCCGGGTAATTGTATATCTTGTTC
TCTTTGTCCAAGGCATCAACCCAATGCTTAAAGTACTTCCAATCAGCACC
TTCAACAAAGTTAAACTTCTTGATGCTTCCAGGGCCTCCATCCCCTGAAA
TCAATTCAACGTTCTTTACAACCTGAGGCAGGACTTTGGGCAGAAGGGTG
TCGAACTGAAGGACAAAAAGTTTGAACAACTTTTCAGGGGGGAGAGTGCT
TGTATCCTCTACATTCAACGTGAGAACACCCATGATTGTCTAAGAGTTAA
ACAAAGAAAGAAGATGAAAACTACCGATCAACTAAAATTGGGAAATTTTG
GGGG
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