FC876495

Overview
NameFC876495
Unique NameFC876495
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length798
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15135 contig Ccv1_Contig15135:384..1181. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876495 vs. ExPASy Swiss-Prot
Match: VA721_ARATH (Vesicle-associated membrane protein 721 OS=Arabidopsis thaliana GN=VAMP721 PE=2 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 7.417e-49
Identity = 99/124 (79.84%), Postives = 103/124 (83.06%), Query Frame = -2
Query:  366 GKAATAVANSLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKMRRKMWIQNMXXXXXXXXXXXXXXXXXXLSVCHGFKC 737
            GKAATA ANSLNKEFGSKLKEHMQYC+DHP+EISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFR  GT+MRRKMW+QNM                  LSVCHGFKC
Sbjct:   96 GKAATAQANSLNKEFGSKLKEHMQYCMDHPDEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTTGTQMRRKMWLQNMKIKLIVLAIIIALILIIVLSVCHGFKC 219          
BLAST of FC876495 vs. ExPASy Swiss-Prot
Match: VA726_ARATH (Putative vesicle-associated membrane protein 726 OS=Arabidopsis thaliana GN=VAMP726 PE=2 SV=2)

HSP 1 Score: 191.045 bits (484), Expect = 6.278e-48
Identity = 96/124 (77.42%), Postives = 102/124 (82.26%), Query Frame = -2
Query:  366 GKAATAVANSLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKMRRKMWIQNMXXXXXXXXXXXXXXXXXXLSVCHGFKC 737
            GKA+TA ANSLNKEFGSKLKEHMQYC DHPEEISKL+KVKAQV+EVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFR QGTKM+RK+W +NM                  LSVCHGFKC
Sbjct:   96 GKASTAKANSLNKEFGSKLKEHMQYCADHPEEISKLSKVKAQVTEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTQGTKMKRKLWFENMKIKLIVFGIIVALILIIILSVCHGFKC 219          
BLAST of FC876495 vs. ExPASy Swiss-Prot
Match: VA722_ARATH (Vesicle-associated membrane protein 722 OS=Arabidopsis thaliana GN=VAMP722 PE=2 SV=2)

HSP 1 Score: 189.504 bits (480), Expect = 1.827e-47
Identity = 97/124 (78.23%), Postives = 101/124 (81.45%), Query Frame = -2
Query:  366 GKAATAVANSLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKMRRKMWIQNMXXXXXXXXXXXXXXXXXXLSVCHGFKC 737
            GKAATA ANSLNKEFGSKLKEHMQYC+DHP+EISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFR QGT+MRRKMW QNM                  LS+C GF C
Sbjct:   96 GKAATAQANSLNKEFGSKLKEHMQYCMDHPDEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTQGTQMRRKMWFQNMKIKLIVLAIIIALILIIILSICGGFNC 219          
BLAST of FC876495 vs. ExPASy Swiss-Prot
Match: VA725_ARATH (Vesicle-associated membrane protein 725 OS=Arabidopsis thaliana GN=VAMP725 PE=2 SV=2)

HSP 1 Score: 187.963 bits (476), Expect = 5.315e-47
Identity = 96/124 (77.42%), Postives = 101/124 (81.45%), Query Frame = -2
Query:  366 GKAATAVANSLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKMRRKMWIQNMXXXXXXXXXXXXXXXXXXLSVCHGFKC 737
            GKA TA ANSLN+EFGSKLKEHMQYCVDHP+EISKLAKVKAQV+EVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFR QGTK+RRKMW +NM                  LSVC GFKC
Sbjct:  161 GKATTAQANSLNREFGSKLKEHMQYCVDHPDEISKLAKVKAQVTEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTQGTKIRRKMWFENMKIKLIVLGIIITLILIIILSVCGGFKC 284          
BLAST of FC876495 vs. ExPASy Swiss-Prot
Match: VA724_ARATH (Vesicle-associated membrane protein 724 OS=Arabidopsis thaliana GN=VAMP724 PE=2 SV=2)

HSP 1 Score: 155.606 bits (392), Expect = 2.923e-37
Identity = 74/124 (59.68%), Postives = 91/124 (73.39%), Query Frame = -2
Query:  366 GKAATAVANSLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKMRRKMWIQNMXXXXXXXXXXXXXXXXXXLSVCHGFKC 737
            GKA+TA+A SLNKEFG  +KEHM Y VDH EEI KL KVKAQVSEVK +M+ENI+K +DRGE + +L DKTENLRSQAQ++++QGT++RRK+W QNM                  +SVCHGF C
Sbjct:   97 GKASTAIAKSLNKEFGPVMKEHMNYIVDHAEEIEKLIKVKAQVSEVKSIMLENIDKAIDRGENLTVLTDKTENLRSQAQEYKKQGTQVRRKLWYQNMKIKLVVLGILLLLVLIIWISVCHGFNC 220          
BLAST of FC876495 vs. ExPASy Swiss-Prot
Match: VA727_ARATH (Vesicle-associated membrane protein 727 OS=Arabidopsis thaliana GN=VAMP727 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.951e-34
Identity = 69/119 (57.98%), Postives = 90/119 (75.63%), Query Frame = -2
Query:  366 AVANSLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKMRRKMWIQNMXXXXXXXXXXXXXXXXXXLSVCHGFKC 722
            +VA +L++EFG  LKEHMQYC+ HPEE+SKL+K+KAQ++EVKG+MM+NIEKVLDRGEKIELLVDKTENL+ QA  F++QG ++RRKMW+Q++                  +  C GFKC
Sbjct:  120 SVAYNLDREFGPILKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVLDRGEKIELLVDKTENLQFQADSFQRQGRQLRRKMWLQSLQMKLMVAGAVFSFILIVWVVACGGFKC 238          
BLAST of FC876495 vs. ExPASy Swiss-Prot
Match: VA723_ARATH (Vesicle-associated membrane protein 723 OS=Arabidopsis thaliana GN=VAMP723 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.480e-28
Identity = 71/123 (57.72%), Postives = 79/123 (64.23%), Query Frame = -2
Query:  366 KAATAVANSLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKMRRKMWIQNMXXXXXXXXXXXXXXXXXXLSVCHGFKC 734
            KAAT  ANSLNKEFGS LKEHMQYC+DHP+EIS LAK KAQVSEVK +MMENIEKVL RG   E+L     +  SQ Q F  + T+M+RK W QNM                  LSVC GF C
Sbjct:   97 KAATDQANSLNKEFGSNLKEHMQYCMDHPDEISNLAKAKAQVSEVKSLMMENIEKVLARGVICEML----GSSESQPQAFYIKRTQMKRKKWFQNMKIKLIVLAIIIALILIIILSVCGGFNC 215          
BLAST of FC876495 vs. ExPASy Swiss-Prot
Match: VA713_ARATH (Vesicle-associated membrane protein 713 OS=Arabidopsis thaliana GN=VAMP713 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.668e-16
Identity = 44/117 (37.61%), Postives = 69/117 (58.97%), Query Frame = -2
Query:  375 TAVANSLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKMRRKMWIQNMXXXXXXXXXXXXXXXXXXLSVCHG 725
            +A A S+N EF   L + M++  + P    +++++K ++S+V+ VM+ENI+KVLDRGE++ELLVDKTEN++     FR+Q  + R  MW +N+                    VCHG
Sbjct:   98 SAQAYSMNDEFSRVLSQQMEFYSNDPNA-DRMSRIKGEMSQVRNVMIENIDKVLDRGERLELLVDKTENMQGNTFRFRKQARRYRTIMWWRNVKLTIALILVLALVVYIAMAFVCHG 213          
BLAST of FC876495 vs. ExPASy Swiss-Prot
Match: VA714_ARATH (Vesicle-associated membrane protein 714 OS=Arabidopsis thaliana GN=VAMP714 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.081e-15
Identity = 42/116 (36.21%), Postives = 74/116 (63.79%), Query Frame = -2
Query:  450 KQQPSSHIDWTLNAIQPFQGKAA-TAVANSLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKMRRKMWIQN 794
            ++ P S+++          GK A  A A ++N EF   L + M++   +P  +  L +V+ +VSE++ VM+ENIEK+++RG++IELLVDKT  ++  +  FR+Q  ++RR +W++N
Sbjct:   74 RRVPFSYLEEIHMRFMKNYGKVAHNAPAYAMNDEFSRVLHQQMEFFSSNPS-VDTLNRVRGEVSEIRSVMVENIEKIMERGDRIELLVDKTATMQDSSFHFRKQSKRLRRALWMKN 188          
BLAST of FC876495 vs. ExPASy Swiss-Prot
Match: VA711_ARATH (Vesicle-associated membrane protein 711 OS=Arabidopsis thaliana GN=VAMP711 PE=2 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 1.081e-15
Identity = 41/117 (35.04%), Postives = 68/117 (58.12%), Query Frame = -2
Query:  375 TAVANSLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKMRRKMWIQNMXXXXXXXXXXXXXXXXXXLSVCHG 725
            TA+A ++N+EF   L + + Y  + P    ++ ++K ++++V+GVM+ENI+KVLDRGE++ELLVDKT N++     FR+Q  + R  +W +N                     +CHG
Sbjct:   97 TALAYAMNEEFSRVLSQQIDYYSNDPNA-DRINRIKGEMNQVRGVMIENIDKVLDRGERLELLVDKTANMQGNTFRFRKQARRFRSNVWWRNCKLTVLLILLLLVIIYIAVAFLCHG 212          
The following BLAST results are available for this feature:
BLAST of FC876495 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
VA721_ARATH7.417e-4979.84Vesicle-associated membrane protein 721 OS=Arabido... [more]
VA726_ARATH6.278e-4877.42Putative vesicle-associated membrane protein 726 O... [more]
VA722_ARATH1.827e-4778.23Vesicle-associated membrane protein 722 OS=Arabido... [more]
VA725_ARATH5.315e-4777.42Vesicle-associated membrane protein 725 OS=Arabido... [more]
VA724_ARATH2.923e-3759.68Vesicle-associated membrane protein 724 OS=Arabido... [more]
VA727_ARATH3.951e-3457.98Vesicle-associated membrane protein 727 OS=Arabido... [more]
VA723_ARATH2.480e-2857.72Vesicle-associated membrane protein 723 OS=Arabido... [more]
VA713_ARATH1.668e-1637.61Vesicle-associated membrane protein 713 OS=Arabido... [more]
VA714_ARATH1.081e-1536.21Vesicle-associated membrane protein 714 OS=Arabido... [more]
VA711_ARATH1.081e-1535.04Vesicle-associated membrane protein 711 OS=Arabido... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN2CD12RM1 EHR Citrus clementina cDNA clone KN0AAN2CD12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876495 ID=FC876495; Name=FC876495; organism=Citrus clementina; type=EST; length=798bp
GCACGAGGCTCGAGTTTTTTTTTTTTTTTTTTTTCTGCAGGTATCCAACT
ATTGTTCCATTACATCTTAAACTAAAATCCACATAAAGCAGCAGGCAGCA
TAAAACAACAGCAGGCAGCATAAAATATTTATCTATTTCGAGGAGTTCAA
GCATATAACCTATACAAGCAATCGAAAAGATACAAATTCATTCCCTTGCC
AAGGGGCAAGTAAGGGCATGATGACCTAAAAGAGGGGAAAAAGAAAACAT
AAACAAAAACAAGCGTGAGAGATGCAAGGATCAAAAGATGTGGCCAATGT
ACCAAGTCGACCATGTCAGCGGGACAGCAAAGCACAGTTTCCAGGGACTT
TCCAAGACCAAATCAACATTTGAAGCCATGGCAAACTGACAGAACGATGA
TAAGGATCAATGCGATGATGATACCCAAAACGATCAATTTAATCTTCATA
TTCTGGATCCACATCTTCCTTCTCATCTTCGTCCCCTGTTGTCGGAAATC
TTGTGCCTGTGACCGAAGGTTCTCAGTTTTGTCAACCAGCAGCTCAATCT
TCTCACCACGATCAAGAACCTTCTCAATATTTTCCATCATAACCCCCTTG
ACTTCAGAAACCTGAGCTTTGACTTTGGCAAGCTTGCTGATCTCTTCAGG
ATGATCCACACAATACTGCATGTGCTCCTTTAGTTTAGACCCAAACTCTT
TGTTCAGGCTATTTGCAACAGCCGTTGCAGCTTTTCCTTGAAAGGGCTGG
ATGGCATTCAGGGTCCAGTCTATGTGGGAACTGGGTTGTTGTTTCAAC
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