FC876518

Overview
NameFC876518
Unique NameFC876518
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length842
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10381 contig Ccv1_Contig10381:1..842. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876518 vs. ExPASy Swiss-Prot
Match: TOC33_ARATH (Translocase of chloroplast 33, chloroplastic OS=Arabidopsis thaliana GN=TOC33 PE=1 SV=1)

HSP 1 Score: 347.051 bits (889), Expect = 7.453e-95
Identity = 169/235 (71.91%), Postives = 202/235 (85.96%), Query Frame = 1
Query:  136 MGSLLLREWAGFQQFPSATQNKLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLNYDVYCSKRSDALLKTIRLGAGLGKHEFEDYAVPVALVENSGRCSKNENDEKILPNGNAWIPPLV 840
            MGSL+ REW GFQQFP+ATQ KLIE   KLKQ+++N++T+LV+GKGGVGKSSTVNS+IGE+VV V+ FQ+E LRPVMVSR+ GGFT+NIIDTPGLVEAGYVN+QALELIKGFL+N+TIDVLLY DRLD YRVD+LD+Q++ A+T TFGK+IW K+LLVLTHAQ  PPD L+Y+ + SKRSD+LLKTIR G+ + K EFED A+ V   ENSGRCSKN+ DEK LPNG AWIP LV
Sbjct:    1 MGSLV-REWVGFQQFPAATQEKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYRVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYETFSSKRSDSLLKTIRAGSKMRKQEFEDSAIAVVYAENSGRCSKNDKDEKALPNGEAWIPNLV 234          
BLAST of FC876518 vs. ExPASy Swiss-Prot
Match: TOC34_ARATH (Translocase of chloroplast 34, chloroplastic OS=Arabidopsis thaliana GN=TOC34 PE=1 SV=2)

HSP 1 Score: 329.717 bits (844), Expect = 1.231e-89
Identity = 158/229 (69.00%), Postives = 191/229 (83.41%), Query Frame = 1
Query:  151 LREWAGFQQFPSATQNKLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLNYDVYCSKRSDALLKTIRLGAGLGKHEFEDYAVPVALVENSGRCSKNENDEKILPNGNAWIPPL 837
            LREW G QQFP ATQ+KL+E+L K K+E+V++LT+LVMGKGGVGKSSTVNSVIGE+   V++FQSE LRP +VSR++ GFTLNIIDTPGL+E GYVN QA+ +IK FLLN TIDVLLY DRLD YRVDDLDRQ++ A+T  FGK+IW+KS LVLTHAQ  PPDGLNY+ + SKRS+ALLK I+ GA L K + + +++PV LVENSGRC KNE+DEKILP G +WIP L
Sbjct:    7 LREWIGIQQFPPATQSKLLEILGKYKEEDVSSLTVLVMGKGGVGKSSTVNSVIGEKAAAVSTFQSEGLRPTLVSRTRSGFTLNIIDTPGLIEGGYVNDQAINIIKRFLLNMTIDVLLYVDRLDVYRVDDLDRQVVGAITDAFGKEIWKKSALVLTHAQFSPPDGLNYNHFVSKRSNALLKVIQTGAQLKKQDLQGFSIPVILVENSGRCHKNESDEKILPCGTSWIPNL 235          
BLAST of FC876518 vs. ExPASy Swiss-Prot
Match: TOC34_PEA (Translocase of chloroplast 34 OS=Pisum sativum GN=TOC34 PE=1 SV=1)

HSP 1 Score: 317.005 bits (811), Expect = 8.259e-86
Identity = 155/230 (67.39%), Postives = 189/230 (82.17%), Query Frame = 1
Query:  151 LREWAGFQQFPSATQNKLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLNYDVYCSKRSDALLKTIRLGAGLGKHEFEDYAVPVALVENSGRCSKNENDEKILPNGNAWIPPLV 840
            +REW+G   F  ATQ KL+ELL  LKQE+VN+LTILVMGKGGVGKSSTVNS+IGERVV+++ FQSE  RPVMVSRS+ GFTLNIIDTPGL+E GY+N  AL +IK FLL+KTIDVLLY DRLDAYRVD+LD+ + KA+T +FGK IW K+++ LTHAQ  PPDGL YD + SKRS+ALL+ +R GA L K + +   +PV L+ENSGRC+KN++DEK+LPNG AWIP LV
Sbjct:    8 VREWSGINTFAPATQTKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFFSKRSEALLQVVRSGASL-KKDAQASDIPVVLIENSGRCNKNDSDEKVLPNGIAWIPHLV 236          
BLAST of FC876518 vs. ExPASy Swiss-Prot
Match: TC159_ARATH (Translocase of chloroplast 159, chloroplastic OS=Arabidopsis thaliana GN=TOC159 PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.295e-30
Identity = 78/236 (33.05%), Postives = 125/236 (52.97%), Query Frame = 1
Query:  142 SLLLREWAGFQQFPSATQNKLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGY---VNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDG-----LNYDVYCSKRSDALLKTIRLGAGLGKHEFEDYAVPVALVENSGRCSKNENDEKILPNGNAW 825
            +LL    AG      A + K +E  ++  +E + +L ILV+GK GVGKS+T+NS++G ++ ++++F         +S +  G  +  IDTPGL  A      N + L  +K  +     D++LY DRLD    D  +  +++ +T + G  IW+ +++ LTHA   PPDG     L+YDV+ ++ S  + ++I    G  +        PV+LVEN   C KN    K+LPNG  W
Sbjct:  821 ALLAGRQAGQLFSLDAAKKKAVESEAEGNEELIFSLNILVLGKAGVGKSATINSILGNQIASIDAFGLSTTSVREISGTVNGVKITFIDTPGLKSAAMDQSTNAKMLSSVKKVMKKCPPDIVLYVDRLDTQTRDLNNLPLLRTITASLGTSIWKNAIVTLTHAASAPPDGPSGTPLSYDVFVAQCSHIVQQSIGQAVGDLRLMNPSLMNPVSLVENHPLCRKNREGVKVLPNGQTW 1056          
BLAST of FC876518 vs. ExPASy Swiss-Prot
Match: TC120_ARATH (Translocase of chloroplast 120, chloroplastic OS=Arabidopsis thaliana GN=TOC120 PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.885e-30
Identity = 89/295 (30.17%), Postives = 147/295 (49.83%), Query Frame = 1
Query:   10 AENTNTVKSDHPGEVR------R*RLYSLSLDATRRRNNIYANSPKKSMG---SLLLREWAGFQQFPSATQNKLIELLSKLKQENVN-TLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAG---YVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLN-----YDVYCSKRSDALLKTIRLGAGLGKHEFEDYAVPVALVENSGRCSKNENDEKILPNGNAWIPPLV 840
            AE++ T ++D   E R      R +   LS    +  +N+        +G    L  R  +    F     + + E L    Q+ ++ + TI+V+GK GVGKS+T+NS+  E  ++ ++FQ    +   +     G  + +IDTPGL+ +    + N + L+ ++ F+     D++LY DRLD    D  D  +++ +T  FG  IW  +++ LTHA   PPDG N     YD++ ++RS  + + IR  AG  +        PV+LVEN   C  N   +++LPNG  W P L+
Sbjct:  368 AEDSTTAETDEHDETREKLQFIRVKFLRLSHRLGQTPHNVVVAQVLYRLGLAEQLRGRNGSRVGAFSFDRASAMAEQLEAAAQDPLDFSCTIMVLGKSGVGKSATINSIFDELKISTDAFQVGTKKVQDIEGFVQGIKVRVIDTPGLLPSWSDQHKNEKILKSVRAFIKKSPPDIVLYLDRLDMQSRDSGDMPLLRTITDVFGPSIWFNAIVGLTHAASAPPDGPNGTASSYDMFVTQRSHVIQQAIRQAAGDMR-----LMNPVSLVENHSACRTNRAGQRVLPNGQVWKPHLL 657          
BLAST of FC876518 vs. ExPASy Swiss-Prot
Match: TC132_ARATH (Translocase of chloroplast 132, chloroplastic OS=Arabidopsis thaliana GN=TOC132 PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 5.441e-29
Identity = 74/205 (36.10%), Postives = 110/205 (53.66%), Query Frame = 1
Query:  250 TILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGY---VNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLN-----YDVYCSKRSDALLKTIRLGAGLGKHEFEDYAVPVALVENSGRCSKNENDEKILPNGNAWIPPLV 840
            TI+V+GK GVGKS+T+NS+  E     ++FQ    R   V     G  + +IDTPGL+ +      N + L  +K F+     D++LY DRLD    D  D  +++ ++  FG  IW  +++ LTHA   PPDG N     YD++ ++RS  + + IR  AG  +        PV+LVEN   C  N   +++LPNG  W P L+
Sbjct:  576 TIMVLGKSGVGKSATINSIFDEVKFCTDAFQMGTKRVQDVEGLVQGIKVRVIDTPGLLPSWSDQAKNEKILNSVKAFIKKNPPDIVLYLDRLDMQSRDSGDMPLLRTISDVFGPSIWFNAIVGLTHAASVPPDGPNGTASSYDMFVTQRSHVIQQAIRQAAGDMR-----LMNPVSLVENHSACRTNRAGQRVLPNGQVWKPHLL 775          
BLAST of FC876518 vs. ExPASy Swiss-Prot
Match: TOC90_ARATH (Translocase of chloroplast 90, chloroplastic OS=Arabidopsis thaliana GN=TOC90 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.933e-22
Identity = 70/204 (34.31%), Postives = 101/204 (49.51%), Query Frame = 1
Query:  244 TLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGL----VEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPP----DGLNYDVYCSKRSDALLKTIRLGAGLGKHEFEDYAVPVALVENSGRCSKNENDEKILPNGNAWIP 831
            +L ILV+GK GVGKS+T+NS+ G+     ++F+    R   V  +  G  +  IDTPG       +   N + L  IK ++  +  DV+LY DRLD   +   D  +++ +T  FG  IW  ++LV+TH+           +NY+ Y  +R D +   I       K E      PV LVEN   C KN   E +LPNG  W P
Sbjct:  166 SLRILVLGKTGVGKSATINSIFGQPKSETDAFRPGTDRIEEVMGTVSGVKVTFIDTPGFHPLSSSSTRKNRKILLSIKRYVKKRPPDVVLYLDRLDMIDMRYSDFSLLQLITEIFGAAIWLNTILVMTHSAATTEGRNGQSVNYESYVGQRMDVVQHYIHQAVSDTKLE-----NPVLLVENHPSCKKNLAGEYVLPNGVVWKP 364          
BLAST of FC876518 vs. ExPASy Swiss-Prot
Match: GTPA_DICDI (GTP-binding protein A OS=Dictyostelium discoideum GN=gtpA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.197e-21
Identity = 75/232 (32.33%), Postives = 119/232 (51.29%), Query Frame = 1
Query:  190 TQNKLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAG--YVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLNYDVY--------CSKRSDALLKTIR-----LGAGLGKHEFEDYAVPVALVENSGRCSKNENDEKILPNGNAWIPPLV 840
            T  +L E+L+ LK    N   +L++G+ GVGKSST+N+V G  +  V+S +S    P   SR   GF LNIIDTPG +++    V+   +  I+ +L  KTI  +L+ ++    R D   + +I   T   G Q+WR + +VLT+A    PD   YD +          K  +A     R     + A L + ++    +PV  +ENS RC +NE  +++L +G   +  L+
Sbjct:  134 TTEELQEMLAVLKGVQ-NECNVLLLGRTGVGKSSTLNTVFGIDI-PVHSSESCTQDPFTYSRVVNGFKLNIIDTPGFLDSQGELVDSNNMIKIQRYLSGKTIHCVLFVEKFTETRFDGAHQLVINQFTEKLGPQLWRNAAVVLTYANSVLPDSC-YDGFDEEDDVGPWKKHYEARALQFRKFFAGILAQLPQDDYPPKHIPVYAMENSRRCKRNEQGQRVLIDGTPCLHLLI 362          
The following BLAST results are available for this feature:
BLAST of FC876518 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
TOC33_ARATH7.453e-9571.91Translocase of chloroplast 33, chloroplastic OS=Ar... [more]
TOC34_ARATH1.231e-8969.00Translocase of chloroplast 34, chloroplastic OS=Ar... [more]
TOC34_PEA8.259e-8667.39Translocase of chloroplast 34 OS=Pisum sativum GN=... [more]
TC159_ARATH1.295e-3033.05Translocase of chloroplast 159, chloroplastic OS=A... [more]
TC120_ARATH2.885e-3030.17Translocase of chloroplast 120, chloroplastic OS=A... [more]
TC132_ARATH5.441e-2936.10Translocase of chloroplast 132, chloroplastic OS=A... [more]
TOC90_ARATH4.933e-2234.31Translocase of chloroplast 90, chloroplastic OS=Ar... [more]
GTPA_DICDI3.197e-2132.33GTP-binding protein A OS=Dictyostelium discoideum ... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAN2CG02RM1 EHR Citrus clementina cDNA clone KN0AAN2CG02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876518 ID=FC876518; Name=FC876518; organism=Citrus clementina; type=EST; length=842bp
TTTTGCTGGGCGGAAAATACAAACACTGTAAAGTCCGACCACCCAGGCGA
GGTAAGAAGATAACGGCTTTACTCCCTCAGTTTGGACGCAACTAGAAGAA
GAAACAACATTTACGCAAACAGCCCGAAGAAATCAATGGGGTCTCTTCTA
CTTCGTGAATGGGCGGGGTTTCAACAGTTTCCTTCTGCAACTCAGAACAA
ATTGATCGAATTACTGTCCAAATTGAAGCAAGAGAATGTAAACACGTTGA
CAATTCTTGTCATGGGCAAAGGTGGTGTTGGAAAATCTTCAACTGTGAAT
TCTGTTATCGGTGAACGAGTAGTCACTGTTAATTCTTTCCAGTCCGAAGC
GCTGAGACCAGTAATGGTTTCTCGTTCCAAAGGAGGTTTCACATTGAACA
TCATTGATACTCCAGGCCTTGTAGAGGCTGGTTATGTTAATTACCAAGCT
CTTGAGTTGATTAAAGGGTTTCTTTTGAATAAGACCATAGATGTTCTGCT
ATATGCTGACCGTTTGGATGCATATAGAGTAGATGACTTGGATAGACAAA
TTATTAAGGCTGTCACCGGAACTTTTGGCAAACAAATATGGCGCAAAAGT
TTACTTGTTCTCACTCATGCACAACTCTGCCCTCCTGATGGACTGAACTA
TGATGTTTACTGCTCTAAACGATCCGATGCTCTTTTAAAGACTATTCGTC
TAGGAGCTGGACTCGGGAAACATGAATTTGAGGATTATGCTGTTCCAGTC
GCTTTGGTTGAGAACAGCGGCAGATGCAGTAAAAATGAGAATGATGAGAA
GATTCTTCCCAATGGTAATGCGTGGATTCCACCCTTGGTTAA
back to top