FC876522

Overview
NameFC876522
Unique NameFC876522
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length832
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15461 contig Ccv1_Contig15461:58..889. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876522 vs. ExPASy Swiss-Prot
Match: CMBL_HUMAN (Carboxymethylenebutenolidase homolog OS=Homo sapiens GN=CMBL PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.950e-19
Identity = 66/213 (30.99%), Postives = 113/213 (53.05%), Query Frame = 3
Query:  216 CELVNGVELS-IGEEAD-DAIQAYLFK-PVKNNNGTGLLLLSDIFGFQDSATRDFAYRVACNGYNVLVPDLFRG-DPWSKERPKAMFEEWIAKQDFERISKDIYTSTKWMVDEFMAAGISKKLGIVGFCFGGGRVIDVLAQDQGGCFGIGVSFYGTRIDQSLASNVNVPVLFVSGDNDPLCPVNALKDVEKSIGRGSK----MLIFKGRGHGF 830
            C++ + +E   +G E   + I+AY+ K PV  + G  ++++ DIFG+Q   TR  A  ++ NGY  +VPD F G +PW      ++F EW+  ++ ++I ++I    K++  +  A    +K+GIVGFC+GG  V  ++ +     F  GVS YG   D     N+  P LF+  +ND + P+  +  + + +    K    +  F G+ HGF
Sbjct:   10 CDIGHRLEYGGLGREVQVEHIKAYVTKSPV--DAGKAVIVIQDIFGWQLPNTRYIADMISGNGYTTIVPDFFVGQEPWDPSGDWSIFPEWLKTRNAQKIDREISAILKYLKQQCHA----QKIGIVGFCWGGTAVHHLMMKYSE--FRAGVSVYGIVKDSEDIYNLKNPTLFIFAENDVVIPLKDVSLLTQKLKEHCKVEYQIKTFSGQTHGF 214          
BLAST of FC876522 vs. ExPASy Swiss-Prot
Match: CMBL_PONAB (Carboxymethylenebutenolidase homolog OS=Pongo abelii GN=CMBL PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.033e-19
Identity = 66/213 (30.99%), Postives = 113/213 (53.05%), Query Frame = 3
Query:  216 CELVNGVELS-IGEEAD-DAIQAYLFK-PVKNNNGTGLLLLSDIFGFQDSATRDFAYRVACNGYNVLVPDLFRG-DPWSKERPKAMFEEWIAKQDFERISKDIYTSTKWMVDEFMAAGISKKLGIVGFCFGGGRVIDVLAQDQGGCFGIGVSFYGTRIDQSLASNVNVPVLFVSGDNDPLCPVNALKDVEKSIGRGSK----MLIFKGRGHGF 830
            C++ + +E   +G E   + I+AY+ K PV  + G  ++++ DIFG+Q   TR  A  ++ NGY  +VPD F G +PW      ++F EW+  ++ ++I ++I    K++  +  A    +K+GIVGFC+GG  V  ++ +     F  GVS YG   D     N+  P LF+  +ND + P+  +  + + +    K    +  F G+ HGF
Sbjct:   10 CDIGHRLEYGGLGREVQVEHIKAYVTKSPV--DAGKAVIVIQDIFGWQLPNTRYMADMISGNGYTTIVPDFFVGQEPWDPSGDWSIFPEWLKTRNAQKIDREISAILKYLKQQCHA----QKIGIVGFCWGGIAVHHLMMKYSE--FRAGVSVYGIVKDSEDIYNLKNPTLFIFAENDVVIPLKDVSLLTQKLKEHCKVEYQIKTFSGQTHGF 214          
BLAST of FC876522 vs. ExPASy Swiss-Prot
Match: CMBL_RAT (Carboxymethylenebutenolidase homolog OS=Rattus norvegicus GN=Cmbl PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.114e-17
Identity = 62/202 (30.69%), Postives = 106/202 (52.48%), Query Frame = 3
Query:  246 IGEEAD-DAIQAYLFK-PVKNNNGTGLLLLSDIFGFQDSATRDFAYRVACNGYNVLVPDLFRG-DPWSKERPKAMFEEWIAKQDFERISKDIYTSTKWMVDEFMAAGISKKLGIVGFCFGGGRVIDVLAQDQGGCFGIGVSFYGTRIDQSLASNVNVPVLFVSGDNDPLCPVNALKDVEKSIGR----GSKMLIFKGRGHGF 830
            +G+E   + I+AY+ + PV  + G  ++++ DIFG+Q S TR  A  +A NGY  +VPD F G +PW      + F EW+  ++  +I++++    +++  +  A    +K+GIVGFC+GG  V  V+          GVS YG   D     N+  P LF+  +ND + P+  +  + + +        ++  F G+ HGF
Sbjct:   21 MGQEVQVEHIKAYVTRSPV--DAGKAVIVVQDIFGWQLSNTRYMADMIAGNGYTTIVPDFFVGQEPWDPAGDWSTFPEWLKSRNARKINREVDAVLRYLKQQCHA----QKIGIVGFCWGGIVVHHVMTTYPE--VRAGVSVYGIIRDSEDVYNLKNPTLFIFAENDAVIPLEQVSILIQKLKEHCIVNYQVKTFSGQTHGF 214          
BLAST of FC876522 vs. ExPASy Swiss-Prot
Match: CMBL_MOUSE (Carboxymethylenebutenolidase homolog OS=Mus musculus GN=Cmbl PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.035e-17
Identity = 61/213 (28.64%), Postives = 109/213 (51.17%), Query Frame = 3
Query:  216 CELVNGVELS-IGEEAD-DAIQAYLFK-PVKNNNGTGLLLLSDIFGFQDSATRDFAYRVACNGYNVLVPDLFRG-DPWSKERPKAMFEEWIAKQDFERISKDIYTSTKWMVDEFMAAGISKKLGIVGFCFGGGRVIDVLAQDQGGCFGIGVSFYGTRIDQSLASNVNVPVLFVSGDNDPLCPVNALKDVEKSIGR----GSKMLIFKGRGHGF 830
            C++ + +E   +G E   + I+AY+ + PV  + G  ++++ DIFG+Q   TR  A  +A NGY  +VPD F G +PW      + F  W+  ++  ++++++    +++  +  A    +K+GIVGFC+GG  V  V+          GVS YG   D     N+  P LF+  +ND + P+  +  + + +        ++  F G+ HGF
Sbjct:   10 CDIGHKLEYGGMGHEVQVEHIKAYVTRSPV--DAGKAVIVVQDIFGWQLPNTRYMADMIARNGYTTIVPDFFVGQEPWDPAGDWSTFPAWLKSRNARKVNREVDAVLRYLRQQCHA----QKIGIVGFCWGGVVVHQVMTAYPD--IRAGVSVYGIIRDSEDVYNLKNPTLFIFAENDTVIPLEQVSTLTQKLKEHCIVNYQVKTFSGQTHGF 214          
BLAST of FC876522 vs. ExPASy Swiss-Prot
Match: CMBL_XENTR (Carboxymethylenebutenolidase homolog OS=Xenopus tropicalis GN=cmbl PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.370e-16
Identity = 60/212 (28.30%), Postives = 108/212 (50.94%), Query Frame = 3
Query:  216 CELVNGVELSI-GEEAD-DAIQAYLFKPVKNNNGTGLLLLSDIFGFQDSATRDFAYRVACNGYNVLVPDLFRG-DPWSKERPKAMFEEWIAKQDFERISKDIYTSTKWMVDEFMAAGISKKLGIVGFCFGGGRVIDVLAQDQGGCFGIGVSFYGTRIDQSLASNVNVPVLFVSGDNDPLCPVNALKDVEKSIGRGSK----MLIFKGRGHGF 830
            C++ + +E    G+E   + I+AY+ KP  ++    ++++ DIFG+Q   TR  A  +  +GY  + PD F G +PW     ++ F EW+  +   ++ K+I    K++ ++       KK+G++GFC+GG  V+      +      GVSFYG   D     N+  P LF+  + D + P+  +  +E+ +   SK    + +F  + HGF
Sbjct:   10 CDIGDKIEYGAKGQEVQIEHIKAYVSKP-HSSTDKAVIVVQDIFGWQLPNTRFMADLLTAHGYITICPDFFVGQEPWKPSNDRSTFTEWLQTRQATKVEKEINVVLKYLKEQCHV----KKIGVIGFCWGG--VVTHHLMLKYPELKAGVSFYGIIRDVEDRYNLLNPTLFIFAEMDHVIPLEQVSLLEEKLKVHSKVDFQVKVFPKQTHGF 214          
BLAST of FC876522 vs. ExPASy Swiss-Prot
Match: CMBL_XENLA (Carboxymethylenebutenolidase homolog OS=Xenopus laevis GN=cmbl PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.732e-14
Identity = 54/192 (28.12%), Postives = 96/192 (50.00%), Query Frame = 3
Query:  270 IQAYLFKPVKNNNGTGLLLLSDIFGFQDSATRDFAYRVACNGYNVLVPDLFRG-DPWSKERPKAMFEEWIAKQDFERISKDIYTSTKWMVDEFMAAGISKKLGIVGFCFGGGRVIDVLAQDQGGCFGIGVSFYGTRIDQSLASNVNVPVLFVSGDNDPLCPVNALKDVEKSIGRGSK----MLIFKGRGHGF 830
            I+AY+ KP  ++    ++++ DIFG+Q   TR  A  +  +GY  + PD F G + W      + F EW+  +   ++ K++    K++ ++       KK+G++GFC+GG  V+      +      GVSFYG   D     N+  P LF+  + D + P+  +  +E+ +   SK    + +F  + HGF
Sbjct:   30 IKAYVSKP-HSSTDKAVIVVQDIFGWQLPNTRFMADLLTAHGYITICPDFFVGQESWKPSNDWSTFTEWLQTRQATKVEKEMNVVLKYLKEQCHV----KKIGVIGFCWGG--VVTHHLMLKYPELKAGVSFYGIIRDVEDRYNLLNPTLFIFAEIDHVIPLEQVSLLEQKLKVHSKVDFQIKVFPKQTHGF 214          
The following BLAST results are available for this feature:
BLAST of FC876522 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
CMBL_HUMAN2.950e-1930.99Carboxymethylenebutenolidase homolog OS=Homo sapie... [more]
CMBL_PONAB5.033e-1930.99Carboxymethylenebutenolidase homolog OS=Pongo abel... [more]
CMBL_RAT2.114e-1730.69Carboxymethylenebutenolidase homolog OS=Rattus nor... [more]
CMBL_MOUSE8.035e-1728.64Carboxymethylenebutenolidase homolog OS=Mus muscul... [more]
CMBL_XENTR1.370e-1628.30Carboxymethylenebutenolidase homolog OS=Xenopus tr... [more]
CMBL_XENLA3.732e-1428.13Carboxymethylenebutenolidase homolog OS=Xenopus la... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAN2CG07RM1 EHR Citrus clementina cDNA clone KN0AAN2CG07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876522 ID=FC876522; Name=FC876522; organism=Citrus clementina; type=EST; length=832bp
GCACGAGGGCAGCAGCCCCCTTATTTGCATCGTCGGCTTCAGTTTTCAAT
AGCCCAGTTCGCCGTCTTTACTTGTTCTCCAGGAGCTCTGCTCCTCTGCT
TAAGAAGAGCGGTACAAATTTTCAAAGGCCATCATTTACGAGGAATCATA
ATGCAGTCTTCAAAGTATCTTGTAGTCTAGTGGAAGTGGAAGAAGACGGC
TTAGATGATGAAACTTGTGAGTTGGTTAATGGAGTTGAGCTTTCCATTGG
TGAGGAGGCTGACGACGCCATCCAAGCTTATCTTTTTAAACCTGTCAAAA
ACAACAACGGAACCGGTTTGCTTCTGCTCTCTGATATTTTTGGATTTCAG
GATTCAGCCACAAGAGATTTCGCATATCGTGTTGCTTGCAATGGTTACAA
TGTTCTTGTTCCGGACTTATTTCGTGGGGATCCATGGTCAAAGGAGCGAC
CAAAGGCTATGTTTGAAGAATGGATAGCAAAGCAAGACTTTGAGAGGATT
TCAAAAGACATATACACTTCAACAAAATGGATGGTTGATGAATTTATGGC
TGCAGGAATTTCAAAGAAGCTTGGTATAGTTGGGTTTTGTTTTGGAGGTG
GCCGAGTAATAGATGTTCTGGCTCAGGATCAGGGTGGTTGTTTTGGCATT
GGGGTCTCATTTTATGGCACAAGGATAGATCAATCTCTAGCATCAAATGT
CAATGTGCCTGTCTTGTTTGTATCCGGTGACAATGATCCTCTTTGTCCTG
TGAATGCGTTGAAGGATGTTGAGAAGAGCATTGGTAGGGGATCAAAGATG
CTGATTTTCAAGGGCAGAGGCCATGGCTTCGC
back to top