FC876529

Overview
NameFC876529
Unique NameFC876529
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length811
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876529 vs. ExPASy Swiss-Prot
Match: QORL_ARATH (Quinone oxidoreductase-like protein At1g23740, chloroplastic OS=Arabidopsis thaliana GN=At1g23740 PE=1 SV=2)

HSP 1 Score: 308.145 bits (788), Expect = 3.618e-83
Identity = 158/224 (70.54%), Postives = 182/224 (81.25%), Query Frame = 3
Query:  135 KMKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGXXXXXXXXXXXXLDLLRSLGADLAIDYTKENIEDLPEKFDVVFDAVG 806
            +MKAWVY +YG    VLK E+N+ VP ++EDQVLIKVVAAALNP+D KR  G F ATDSPLPT+PGYDVAGVV KVGS VK  K GDEVY +++EKAL+ PK+ GSLAEYTAVEE LLALKPKN+ F +AA LPLA ETA EGL R+ FSAGKSILVL GAGGVG++VIQLAKHV+G            L+L+RSLGADLAIDYTKENIEDLP+K+DVVFDA+G
Sbjct:   77 EMKAWVYSDYGGVD-VLKLESNIVVPEIKEDQVLIKVVAAALNPVDAKRRQGKFKATDSPLPTVPGYDVAGVVVKVGSAVKDLKEGDEVYANVSEKALEGPKQFGSLAEYTAVEEKLLALKPKNIDFAQAAGLPLAIETADEGLVRTEFSAGKSILVLNGAGGVGSLVIQLAKHVYGASKVAATASTEKLELVRSLGADLAIDYTKENIEDLPDKYDVVFDAIG 299          
BLAST of FC876529 vs. ExPASy Swiss-Prot
Match: RT4I1_DANRE (Reticulon-4-interacting protein 1 homolog, mitochondrial OS=Danio rerio GN=rtn4ip1 PE=2 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 9.677e-28
Identity = 92/245 (37.55%), Postives = 129/245 (52.65%), Query Frame = 3
Query:  138 MKAWVYKEYGNSQSVLKFETNVEVPSLR-EDQVLIKVVAAALNPIDFKRMLGAFSATDS----PL---------PTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLERSA-----FSAGKSILVLGGAGGVGTMVIQLAKHVFGXXXXXXXXXXXXLDLLRSLGADLAIDYTKENIEDL---PEKFDVVFDAVG 806
            M AWV  +YG +  VL+F  N  +P +   ++V++KV AA LNPID     G  +AT +    PL         P I G DV+G + + G  VK FK GD+V+  I       P + GSLAE+  V  N ++ KPK+L   EAAS+P    TA+  +  +       SA K +L+LGG+GGVGT  IQ+ K  +G              L+R LGAD  +DYT   +E      EKFD++ D++G
Sbjct:   29 MPAWVIDKYGKND-VLRFTKNAALPIIHYPNEVVVKVHAAGLNPIDISMRGGYGAATMAMKRDPLNISQSGGEFPLILGRDVSGEIMECGLDVKYFKPGDQVWAAIP------PWKQGSLAEFVVVSGNEVSHKPKSLRHDEAASIPYVAATAWSAIVNTGGLNKDNSAKKRVLILGGSGGVGTFAIQMVK-AWGAHVTVTCSQNAE-RLVRDLGADDVVDYTAGPVEKQLKNLEKFDLILDSIG 264          
BLAST of FC876529 vs. ExPASy Swiss-Prot
Match: QORH_SPIOL (Quinone-oxidoreductase homolog, chloroplastic OS=Spinacia oleracea GN=QOR PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 8.192e-27
Identity = 79/210 (37.62%), Postives = 106/210 (50.48%), Query Frame = 3
Query:  138 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSAT-DSPLPTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLERSA------FSAGKSILVLGGAGGVGTMVIQLAKHVFGXXXXXXXXXXXXLDLLRSLGADLAIDY 746
            M A  Y  YG     LK    V VP  + D++L+K+ AA LNPID+K   G          PTIPG DVAG V + GS V +FK GD+V   ++          G+LAEY   +ENL   +P  +S  E A+LP+A  TA++ L + A          K+IL+   +GGVG   +QLAK   G            LD ++ LGAD  +DY
Sbjct:    6 MHAIQYSGYGGGTDALK-HVEVAVPDPKSDELLLKIEAATLNPIDWKIQKGVLRPLLPRKFPTIPGTDVAGEVVQAGSAVNRFKTGDKVVAVLSHAT------GGALAEYAVAKENLTVARPPEVSAAEGAALPVAALTAHQALTQFANIKLDGSGERKNILITAASGGVGHYAVQLAK--LGNTHVTATCGARNLDFVKGLGADEVLDY 206          
BLAST of FC876529 vs. ExPASy Swiss-Prot
Match: RT4I1_BOVIN (Reticulon-4-interacting protein 1, mitochondrial OS=Bos taurus GN=RTN4IP1 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.825e-26
Identity = 87/249 (34.94%), Postives = 128/249 (51.41%), Query Frame = 3
Query:  138 MKAWVYKEYGNSQSVLKFETNVEVPSLR-EDQVLIKVVAAALNPIDFKRMLG----AFSATDSPL---------PTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLER-----SAFSAGKSILVLGGAGGVGTMVIQLAK----HVFGXXXXXXXXXXXXLDLLRSLGADLAIDYTKENIE---DLPEKFDVVFDAVG 806
            M AWV  +YG+++ VL+F  N+ +P +   ++V+IKV AA++NPID     G    A +    PL         P   G DV+GVV + G  V+ FK GDEV+  +       P + G+L+E+  V  N ++ KP++L+  +AASLP    TA+  + +          GK +L+LG +GGVGT  IQ+ K    HV               +L+R LGAD  IDY   N+E      + FD + D VG
Sbjct:   43 MPAWVIDKYGSNE-VLRFTQNMMIPMIHYPNEVIIKVHAASINPIDVNMRSGYGATALNMKRDPLHVKIKGEEFPLTLGRDVSGVVMECGLDVRYFKPGDEVWAAVP------PWKQGTLSEFVVVSGNEVSHKPRSLTHTQAASLPYVALTAWSAINKVGGLNDRNCTGKRVLILGASGGVGTFAIQVMKAWDAHVTAVCSQDAS------ELVRKLGADDVIDYKSGNVEAQLKSSKPFDFILDNVG 278          
BLAST of FC876529 vs. ExPASy Swiss-Prot
Match: RT4I1_HUMAN (Reticulon-4-interacting protein 1, mitochondrial OS=Homo sapiens GN=RTN4IP1 PE=1 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 4.066e-26
Identity = 87/249 (34.94%), Postives = 128/249 (51.41%), Query Frame = 3
Query:  138 MKAWVYKEYGNSQSVLKFETNVEVPSLR-EDQVLIKVVAAALNPIDFKRMLG----AFSATDSPL---------PTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLER-----SAFSAGKSILVLGGAGGVGTMVIQLAK----HVFGXXXXXXXXXXXXLDLLRSLGADLAIDYTKENIEDLPEK---FDVVFDAVG 806
            M AWV  +YG ++ VL+F  N+ +P +   ++V++KV AA++NPID     G    A +    PL         P   G DV+GVV + G  VK FK GDEV+  +       P + G+L+E+  V  N ++ KPK+L+  +AASLP    TA+  + +          GK +L+LG +GGVGT  IQ+ K    HV               +L+R LGAD  IDY   ++E+  +    FD + D VG
Sbjct:   43 MPAWVIDKYGKNE-VLRFTQNMMMPIIHYPNEVIVKVHAASVNPIDVNMRSGYGATALNMKRDPLHVKIKGEEFPLTLGRDVSGVVMECGLDVKYFKPGDEVWAAVP------PWKQGTLSEFVVVSGNEVSHKPKSLTHTQAASLPYVALTAWSAINKVGGLNDKNCTGKRVLILGASGGVGTFAIQVMKAWDAHVTAVCSQDAS------ELVRKLGADDVIDYKSGSVEEQLKSLKPFDFILDNVG 278          
BLAST of FC876529 vs. ExPASy Swiss-Prot
Match: RT4I1_MOUSE (Reticulon-4-interacting protein 1, mitochondrial OS=Mus musculus GN=Rtn4ip1 PE=1 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 9.057e-26
Identity = 88/249 (35.34%), Postives = 128/249 (51.41%), Query Frame = 3
Query:  138 MKAWVYKEYGNSQSVLKFETNVEVPSLR-EDQVLIKVVAAALNPIDFKRMLG----AFSATDSPL---------PTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLER-----SAFSAGKSILVLGGAGGVGTMVIQLAK----HVFGXXXXXXXXXXXXLDLLRSLGADLAIDYTKENIEDLPEK---FDVVFDAVG 806
            M AWV  +YG ++ VL+F  N+ +P +   ++V+IKV AA++NPID     G    A +    PL         P   G DV+GVV + G  VK F+ GDEV+  +       P + G+L+E+  V  N ++ KPK+L+  +AASLP    TA+  + +          GK  L+LG +GGVGT  IQ+ K    HV               +L+R LGAD  IDYT  ++E+  +    FD + D VG
Sbjct:   43 MPAWVIDKYGKNE-VLRFTQNMMLPIIHYPNEVIIKVHAASVNPIDVNMRSGYGATALNMKRDPLHMKTKGEEFPLTLGRDVSGVVMECGLDVKYFQPGDEVWAAVP------PWKQGTLSEFVVVSGNEVSHKPKSLTHTQAASLPYVALTAWSAINKVGGLSDKNCKGKRALILGASGGVGTFAIQVMKAWGAHVTAVCSKDAS------ELVRKLGADEVIDYTLGSVEEQLKSLKLFDFILDNVG 278          
BLAST of FC876529 vs. ExPASy Swiss-Prot
Match: ZDH1_STAES (Zinc-type alcohol dehydrogenase-like protein SE_1777 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=SE_1777 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.495e-23
Identity = 69/204 (33.82%), Postives = 110/204 (53.92%), Query Frame = 3
Query:  192 ETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGL-------ERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGXXXXXXXXXXXXLDLLRSLGADLAIDYTKENIEDLPEKF 782
            E N ++P     ++L+KV + ++NP+D K+     +     +P + G+D  GV+EK+G QV  F+ GD V+          P +NGS  EY  +EE L+A  P NL   +AASLPL   TAYE L       +  + + GKS+L++ GAGGVG++  Q+AK  +G            +    ++GAD+ +++ K    DL ++F
Sbjct:   20 EFNFDIPHPSGHELLVKVQSISVNPVDTKQR----TMPVDKVPRVLGFDAVGVIEKIGDQVSMFQEGDVVFYS------GSPNQNGSNEEYQLIEEYLVAKAPTNLKSEQAASLPLTGLTAYETLFDVFGISKEPSENKGKSLLIINGAGGVGSIATQIAK-FYGLKVITTASREDTIKWSVNMGADVVLNHKK----DLSQQF 208          
BLAST of FC876529 vs. ExPASy Swiss-Prot
Match: ZDH1_STAEQ (Zinc-type alcohol dehydrogenase-like protein SERP1785 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=SERP1785 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 9.373e-23
Identity = 69/204 (33.82%), Postives = 109/204 (53.43%), Query Frame = 3
Query:  192 ETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGL-------ERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGXXXXXXXXXXXXLDLLRSLGADLAIDYTKENIEDLPEKF 782
            E N ++P     ++L+KV + ++NP+D K+     +      P + G+D  GV+EK+G QV  F+ GD V+          P +NGS  EY  +EE L+A  P NL   +AASLPL   TAYE L       +  + + GKS+L++ GAGGVG++  Q+AK  +G            +    ++GAD+ +++ K    DL ++F
Sbjct:   20 EFNFDIPHPSGHELLVKVQSISVNPVDTKQR----TMPVDKAPRVLGFDAVGVIEKIGDQVSMFQEGDVVFYS------GSPNQNGSNEEYQLIEEYLVAKAPTNLKSEQAASLPLTGLTAYETLFDVFGISKEPSENKGKSLLIINGAGGVGSIATQIAK-FYGLKVITTASREDTIKWSVNMGADVVLNHKK----DLSQQF 208          
BLAST of FC876529 vs. ExPASy Swiss-Prot
Match: YBI2_SCHPO (Zinc-type alcohol dehydrogenase-like protein C16A3.02c OS=Schizosaccharomyces pombe GN=SPBC16A3.02c PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.088e-22
Identity = 79/229 (34.50%), Postives = 115/229 (50.22%), Query Frame = 3
Query:  144 AWVYKEYGNSQSVLKFETNVEVPSLRE---DQVLIKVVAAALNPIDFKRM--LGAFSATDSPLPTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLERS-AFSAGKSILVLGGAGGVGTMVIQLAKHVFGXXXXXXXXXXXXLDLLRSLGADLAIDYTKEN-IEDLPE--KFDVVFDAV 803
            AW+Y   G  + VL  E  + +P+  E     VL++VVA ++NP+D+K M      +     LP IPGYD AG V  VGS+VK+F     V+G   +      ++ GS A +    +  +   P  +SF E A   +A  TA+E L R      G  +++ G +GGVGT  + LAK +              LDL +SLGA   +DY K+N +E L +   +D VFD V
Sbjct:   14 AWLYNRTGKPKDVLYLEKGLHIPNPAELGPYDVLVEVVATSINPLDYKLMNTYQMIAKALFKLPNIPGYDFAGRVLAVGSEVKEFSATQRVWG--CQSFPRAGRQGGSCATHIVTGDKDVWHLPDGVSFNEGAGFGIAGLTAWEVLVRQMKVKPGTKLVIEGASGGVGTFAVALAKAL--ECEVTTISSTENLDLCKSLGATHTLDYKKDNLVERLADLGPYDFVFDCV 238          
BLAST of FC876529 vs. ExPASy Swiss-Prot
Match: QORH_ARATH (Putative quinone-oxidoreductase homolog, chloroplastic OS=Arabidopsis thaliana GN=At4g13010 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.015e-21
Identity = 75/229 (32.75%), Postives = 107/229 (46.72%), Query Frame = 3
Query:  138 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSA-TDSPLPTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYE------GLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGXXXXXXXXXXXXLDLLRSLGADLAIDYTKENIEDLPEKFDVVFDAV 803
            M A  Y  YG   + L+    V VP+ + ++V +K+ A +LNP+D+K   G          P IP  DVAG V +VGS VK FK GD+V   ++          G LAE+    E L   +P+ +   EAA+LP+A  TA +      GL+        +ILV   +GGVG   +QLAK                ++ ++SLGAD  +DY       L       +DAV
Sbjct:    6 MHALQYNSYGGGAAGLE-HVQVPVPTPKSNEVCLKLEATSLNPVDWKIQKGMIRPFLPRKFPCIPATDVAGEVVEVGSGVKNFKAGDKVVAVLSHLG------GGGLAEFAVATEKLTVKRPQEVGAAEAAALPVAGLTALQALTNPAGLKLDGTGKKANILVTAASGGVGHYAVQLAK--LANAHVTATCGARNIEFVKSLGADEVLDYKTPEGAALKSPSGKKYDAV 225          
The following BLAST results are available for this feature:
BLAST of FC876529 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
QORL_ARATH3.618e-8370.54Quinone oxidoreductase-like protein At1g23740, chl... [more]
RT4I1_DANRE9.677e-2837.55Reticulon-4-interacting protein 1 homolog, mitocho... [more]
QORH_SPIOL8.192e-2737.62Quinone-oxidoreductase homolog, chloroplastic OS=S... [more]
RT4I1_BOVIN1.825e-2634.94Reticulon-4-interacting protein 1, mitochondrial O... [more]
RT4I1_HUMAN4.066e-2634.94Reticulon-4-interacting protein 1, mitochondrial O... [more]
RT4I1_MOUSE9.057e-2635.34Reticulon-4-interacting protein 1, mitochondrial O... [more]
ZDH1_STAES5.495e-2333.82Zinc-type alcohol dehydrogenase-like protein SE_17... [more]
ZDH1_STAEQ9.373e-2333.82Zinc-type alcohol dehydrogenase-like protein SERP1... [more]
YBI2_SCHPO2.088e-2234.50Zinc-type alcohol dehydrogenase-like protein C16A3... [more]
QORH_ARATH3.015e-2132.75Putative quinone-oxidoreductase homolog, chloropla... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN2CH02RM1 EHR Citrus clementina cDNA clone KN0AAN2CH02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876529 ID=FC876529; Name=FC876529; organism=Citrus clementina; type=EST; length=811bp
GCACGAGGACTTACCAAACATCTTTAGGCAGGCTTTACTCCTTCACTTTC
CTCTTCATAAATAACATTGCATGTATAGAAGTCACAGCCAGCAAATAAAA
CCCAATTAATTTATTAAGATAAATAATCATCTGAAAAATGAAGGCTTGGG
TTTACAAAGAATATGGAAACTCTCAAAGTGTTTTGAAGTTTGAAACAAAT
GTTGAAGTTCCAAGTTTGAGGGAAGATCAAGTGCTGATCAAGGTTGTAGC
CGCGGCTCTTAATCCAATTGATTTCAAGAGGATGCTTGGGGCATTCAGCG
CAACTGACTCTCCTTTGCCTACGATTCCTGGGTATGATGTTGCGGGTGTC
GTGGAGAAAGTGGGAAGCCAAGTAAAGAAGTTTAAGGTAGGAGATGAAGT
TTATGGAGATATAAATGAGAAAGCATTGGATCATCCTAAACGAAATGGCT
CCTTAGCTGAGTACACTGCTGTTGAAGAGAATCTATTGGCTCTCAAGCCC
AAAAACCTGAGTTTTGTTGAGGCTGCAAGCCTTCCCCTTGCCACTGAGAC
TGCCTATGAAGGTCTTGAACGTTCTGCCTTTTCCGCCGGTAAATCTATTC
TTGTTTTAGGTGGAGCTGGTGGAGTTGGCACCATGGTGATTCAGCTAGCT
AAGCATGTCTTTGGTGCATCTAAAGTAGCAGCTACCTCTAGCACTGCAAA
GCTGGACTTGTTAAGGAGCTTGGGTGCTGATTTGGCTATTGATTACACCA
AGGAAAACATTGAAGACCTGCCTGAGAAATTTGATGTAGTGTTTGATGCA
GTTGGGCAATG
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