FC876530

Overview
NameFC876530
Unique NameFC876530
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length793
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10382 contig Ccv1_Contig10382:1..793. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876530 vs. ExPASy Swiss-Prot
Match: TRM61_HUMAN (tRNA (adenine-N(1)-)-methyltransferase catalytic subunit TRMT61A OS=Homo sapiens GN=TRMT61A PE=1 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 3.906e-50
Identity = 105/219 (47.95%), Postives = 139/219 (63.47%), Query Frame = 1
Query:  130 ISFTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHS-DWIGKPFGSMVFSNKGGFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVXXXXXXXXXXXXXXARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLK-QDGILCSFSPCIEQVQRSCESL 780
            +++   IKEGD  I+   H  M AV+V + +  Q R G  +HS D IG+PFGS V   +GG+VY+L PTPELWTL L HRTQILY  DI+ + M LEL PG +V               R +APTGH++T +FH+QRA  ARE+F+   V  +VTV  +D+   GF    S +AD++FLD+P PW A+  A   LK + G  CSFSPCIEQVQR+C++L
Sbjct:    4 VAYEELIKEGDTAILSLGHGAMVAVRVQRGAQTQTRHGVLRHSVDLIGRPFGSKVTCGRGGWVYVLHPTPELWTLNLPHRTQILYSTDIALITMMLELRPGSVVCESGTGSGSVSHAIIRTIAPTGHLHTVEFHQQRAEKAREEFQEHRVGRWVTVRTQDVCRSGF--GVSHVADAVFLDIPSPWEAVGHAWDALKVEGGRFCSFSPCIEQVQRTCQAL 220          
BLAST of FC876530 vs. ExPASy Swiss-Prot
Match: TRM61_RAT (tRNA (adenine-N(1)-)-methyltransferase catalytic subunit TRMT61A OS=Rattus norvegicus GN=Trmt61a PE=2 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 8.702e-50
Identity = 104/219 (47.49%), Postives = 142/219 (64.84%), Query Frame = 1
Query:  130 ISFTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHS-DWIGKPFGSMVFSNKGGFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVXXXXXXXXXXXXXXARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLK-QDGILCSFSPCIEQVQRSCESL 780
            +++   IKEGD  I+   H  M AV+V + +  Q R G  +HS D IG+PFGS V  ++GG+VY+L PTPELWT+ L HRTQILY  DI+ + M LEL PG +V               R++APTGH++T +FH+QRA  ARE+F++  VS +VTV  +D+   GF      +AD++FLD+P PW A+  A   LK + G  CSFSPCIEQVQR+C++L
Sbjct:    4 VAYEELIKEGDTAILSLGHGSMVAVRVQRGAQTQTRHGVLRHSVDLIGRPFGSKVTCSRGGWVYVLHPTPELWTVNLPHRTQILYSTDIALITMMLELRPGSVVCESGTGSGSVSHAIIRSIAPTGHLHTVEFHQQRADKAREEFQQHRVSQWVTVHTQDVCRSGF--GVVHVADAVFLDIPSPWEAVGHAWDALKVEGGRFCSFSPCIEQVQRTCQAL 220          
BLAST of FC876530 vs. ExPASy Swiss-Prot
Match: TRM61_MOUSE (tRNA (adenine-N(1)-)-methyltransferase catalytic subunit TRMT61A OS=Mus musculus GN=Trmt61a PE=2 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.484e-49
Identity = 104/219 (47.49%), Postives = 141/219 (64.38%), Query Frame = 1
Query:  130 ISFTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHS-DWIGKPFGSMVFSNKGGFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVXXXXXXXXXXXXXXARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLK-QDGILCSFSPCIEQVQRSCESL 780
            +++   IKEGD  I+   H  M AV+V + +  Q R G  +HS D IG+PFGS V  ++GG+VY+L PTPELWT+ L HRTQILY  DI+ + M LEL PG +V               R+VAPTGH++T +FH+QRA  ARE+F+   +S +VTV  +D+   GF      +AD++FLD+P PW A+  A   LK + G  CSFSPCIEQVQR+C++L
Sbjct:    4 VAYEELIKEGDTAILSLGHGSMVAVRVQRGAQTQTRHGVLRHSVDLIGRPFGSKVICSRGGWVYVLHPTPELWTVNLPHRTQILYSTDIALITMMLELRPGSVVCESGTGSGSVSHAIIRSVAPTGHLHTVEFHQQRADKAREEFQEHRLSQWVTVHTQDVCCSGF--GVVHVADAVFLDIPSPWEAVGHAWDALKVEGGRFCSFSPCIEQVQRTCQAL 220          
BLAST of FC876530 vs. ExPASy Swiss-Prot
Match: TRM61_BOVIN (tRNA (adenine-N(1)-)-methyltransferase catalytic subunit TRMT61A OS=Bos taurus GN=TRMT61A PE=2 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 3.307e-49
Identity = 105/219 (47.95%), Postives = 139/219 (63.47%), Query Frame = 1
Query:  130 ISFTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHS-DWIGKPFGSMVFSNKGGFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVXXXXXXXXXXXXXXARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLK-QDGILCSFSPCIEQVQRSCESL 780
            +++   IKEGD  I+   H  M AV+V + +  Q R G  +HS D IG+PFGS V   +GG+VY+L PTPELWTL L HRTQILY  DI+ + M LEL PG +V               R +APTGH++T +FH+QRA  ARE+F+   V  +VTV  +D+   GF    S +AD++FLD+P PW A+  A   LK + G  CSFSPCIEQVQR+C++L
Sbjct:    4 VAYEELIKEGDTAILSLGHGAMVAVRVQRGAQTQTRHGVLRHSVDLIGRPFGSKVTCGRGGWVYVLHPTPELWTLNLPHRTQILYSTDIALLTMMLELRPGSVVCESGTGSGSVSHAIIRTIAPTGHLHTVEFHQQRAERAREEFQEHRVGRWVTVLNQDVCRSGF--GVSHVADAVFLDIPSPWEAVGHAWDALKVEGGRFCSFSPCIEQVQRTCQAL 220          
BLAST of FC876530 vs. ExPASy Swiss-Prot
Match: TRM61_DICDI (tRNA (adenine-N(1)-)-methyltransferase catalytic subunit trmt61a OS=Dictyostelium discoideum GN=trmt61a PE=1 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.438e-44
Identity = 92/216 (42.59%), Postives = 135/216 (62.50%), Query Frame = 1
Query:  142 RCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKG-GFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVXXXXXXXXXXXXXXARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG-QGF-PDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESL 780
            + IKEGD V++Y   D M  + +  N+ + ++FG+++H + IGK +GS + S+ G GF +++A TPELW++ L HRTQIL+  DIS +I  LEL  G                 AR +AP GH++TF+FHE+R   AR+DF+  G+  ++TV  RD  G +GF   + +   D++FLDLP PW AI +A  ++    +LCSFSPCIEQVQ +C  L
Sbjct:    6 KIIKEGDRVVMYNGKDNMAVLTMESNNVYNSKFGSYRHKNIIGKEYGSKLSSDNGNGFCHVIAMTPELWSITLDHRTQILFNLDISTIIFNLELKNGSRAVESGTGSGSLSSSIARTIAPKGHLFTFEFHEERVKFARKDFKDNGLDQYITVTHRDACGKEGFLRQDINNDIDAVFLDLPSPWDAIENAIAVMHDGSMLCSFSPCIEQVQNTCLKL 221          
BLAST of FC876530 vs. ExPASy Swiss-Prot
Match: TRM61_KLULA (tRNA (adenine-N(1)-)-methyltransferase catalytic subunit TRM61 OS=Kluyveromyces lactis GN=TRM61 PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.303e-37
Identity = 92/236 (38.98%), Postives = 131/236 (55.51%), Query Frame = 1
Query:  148 IKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVF-----SNKGGFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVXXXXXXXXXXXXXXARAVAPTGHVYTFDFHEQRAASAREDFERTGV--SSFVTVGVRDIQGQGF--------PDEFSG--------LADSIFLDLPQPWLAIPSAKKMLKQDG--ILCSFSPCIEQVQRSCESL 780
            IKEGDLV+ +   D +K + V     F  R+GAF HSD IGKPFGS +      SN+ GF+++L PTPELW++ L HRTQI+Y  D S+++  +E  P   V              AR+    GH+++++FHE R   A+++F+  G+  +   T+  RD+   GF          EF G         AD IFLDLP PW AIP+   ++ ++    LC FSPCIEQV ++ E+L
Sbjct:   11 IKEGDLVLAWLSRDNLKPITVKAGEVFNTRYGAFSHSDMIGKPFGSQIAIRTKGSNRFGFIHVLQPTPELWSISLPHRTQIVYTPDSSYIMQRMECNPRSRVIEAGTGSGSFSHAFARS---AGHLFSYEFHEVRYEQAKQEFKEHGLLEAGNTTITHRDVCKDGFEIKNGDTTSHEFRGPEETKVELNADCIFLDLPAPWDAIPNLTSVISKEKKVNLCCFSPCIEQVDKTLEAL 243          
BLAST of FC876530 vs. ExPASy Swiss-Prot
Match: TRM61_CRYNE (tRNA (adenine-N(1)-)-methyltransferase catalytic subunit TRM61 OS=Cryptococcus neoformans GN=TRM61 PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.303e-37
Identity = 87/216 (40.28%), Postives = 129/216 (59.72%), Query Frame = 1
Query:  148 IKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKG--GFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVXXXXXXXXXXXXXXARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGI--LCSFSPCIEQVQRSCESLR 783
            I+ GD+VI+Y   D M A+ +     F N++G + H   IG+ +GS + S     G+V++L PTPELWTL L HRTQILY+ DIS++ M L +  G  V              +R+V P+G V +F++H QR  +A ++FE  G+++ V +  R++  +GF D      + +FLDLP PW AIP A K L++D I  +C FSPC+EQV ++   LR
Sbjct:   14 IEAGDIVILYMARDNMTAITITPGETFHNKYGRYPHDMLIGQKYGSKIHSPPPHPGYVHVLRPTPELWTLSLPHRTQILYLPDISYITMRLGVRVGGKVIEAGTGSGSMTHSLSRSVGPSGQVMSFEYHRQRFETALKEFESHGLTN-VRLQHRNVCKEGFGDAQG--VEGVFLDLPAPWEAIPHAVKALRRDIITRICCFSPCLEQVLKTVTCLR 226          
BLAST of FC876530 vs. ExPASy Swiss-Prot
Match: TRM61_CANAL (tRNA (adenine-N(1)-)-methyltransferase catalytic subunit TRM61 OS=Candida albicans GN=TRM61 PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 8.449e-37
Identity = 90/219 (41.10%), Postives = 121/219 (55.25%), Query Frame = 1
Query:  148 IKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKG-GFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVXXXXXXXXXXXXXXARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFP-DEFSGLADSIFLDLPQPWLAIPSAKKML---KQDGILCSFSPCIEQVQRSCESLRLN 789
            I+EGDLV+ Y     +K + V +   F  R+G F+H   IG  +G  +   KG GF++LL PTPELWTL L HRTQI+Y  D S++I  L + PG  V              AR V  +G V+T++FHE R   A+++ E   + +  T+  RD+   GF  D  S   D +FLDLP PW AIP    ++   K  GI C FSPCIEQV R+  +L  N
Sbjct:   10 IEEGDLVLAYISRSTIKPINVKKGEIFNTRYGHFEHDKMIGMKYGEQMPGAKGYGFIHLLHPTPELWTLSLPHRTQIVYSPDSSYIIQRLNVKPGSRVIEAGTGSASFTHSFARTVTLSGKVFTYEFHEPRYLEAKKELEEHKLDN-TTITHRDVCNDGFSIDNESIEGDVVFLDLPSPWDAIPHLDSVISTSKAAGI-CCFSPCIEQVDRTVRALEEN 226          
BLAST of FC876530 vs. ExPASy Swiss-Prot
Match: TRM61_DEBHA (tRNA (adenine-N(1)-)-methyltransferase catalytic subunit TRM61 OS=Debaryomyces hansenii GN=TRM61 PE=3 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 9.341e-36
Identity = 81/223 (36.32%), Postives = 122/223 (54.71%), Query Frame = 1
Query:  148 IKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKG-GFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVXXXXXXXXXXXXXXARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGF-----PDEFSG----LADSIFLDLPQPWLAIPSAKKMLKQDGI--LCSFSPCIEQVQRSCESL 780
            I+EGDLV+ +     +K + V + S    R+G F+H   IG  +G  +   KG GF++LL PTPELWT+ L HRTQI+Y  D S++I  L +  G  V              AR +   G ++T++FHE R   A+++ E  G+ +   +  RD+   GF     P++F        D +FLDLP PW AIP+ K ++       +C FSPCIEQV+++ ++L
Sbjct:   10 IEEGDLVLAFLGRSNIKPITVTKGSQLNTRYGNFEHDRMIGMKYGEQMPGAKGVGFIHLLYPTPELWTVSLPHRTQIVYTPDSSYIIQRLNVTSGTRVIEAGTGSGSFSHSFARTIGVEGRLFTYEFHEPRYIEAKKELEDHGLLANTVITHRDVCNDGFEISNIPEDFKKDDGICGDVVFLDLPSPWTAIPNLKSVISHQSRVGICCFSPCIEQVEKTVKAL 232          
BLAST of FC876530 vs. ExPASy Swiss-Prot
Match: TRM61_SCHPO (tRNA (adenine-N(1)-)-methyltransferase catalytic subunit trm61 OS=Schizosaccharomyces pombe GN=cpd1 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 7.908e-35
Identity = 83/219 (37.90%), Postives = 116/219 (52.97%), Query Frame = 1
Query:  148 IKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSN-KGGFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVXXXXXXXXXXXXXXARAVAPTGHVYTFDFHEQRAASAREDFER----TGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGI--LCSFSPCIEQVQRSCESLR 783
            ++ GDL + +   + +  + +     F N++GAF HS+ IGK +G  + S  K GF+YLL PTPELWTL L HRTQI+Y  DI+ +   L +  G  V              +R V P G ++TF++H  R  +A ++F        V     +  RD+   GF D      D+IFLDLP PW AIP     +  D    +C FSPCIEQ+Q S E+LR
Sbjct:   10 VENGDLAVAWIGRNKLIPLHIEAEKTFHNQYGAFPHSEMIGKRYGEQIASTAKQGFIYLLQPTPELWTLALPHRTQIVYTPDIALIHQKLRITYGTRVIEAGTGSASMSHAISRTVGPLGRLFTFEYHATRYQTALQEFREHEMLIDVGGNTHLTHRDVCKDGFLDT-EVKVDAIFLDLPAPWEAIPHLSNHVNHDKSTRICCFSPCIEQIQHSAEALR 227          
The following BLAST results are available for this feature:
BLAST of FC876530 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
TRM61_HUMAN3.906e-5047.95tRNA (adenine-N(1)-)-methyltransferase catalytic s... [more]
TRM61_RAT8.702e-5047.49tRNA (adenine-N(1)-)-methyltransferase catalytic s... [more]
TRM61_MOUSE1.484e-4947.49tRNA (adenine-N(1)-)-methyltransferase catalytic s... [more]
TRM61_BOVIN3.307e-4947.95tRNA (adenine-N(1)-)-methyltransferase catalytic s... [more]
TRM61_DICDI1.438e-4442.59tRNA (adenine-N(1)-)-methyltransferase catalytic s... [more]
TRM61_KLULA1.303e-3738.98tRNA (adenine-N(1)-)-methyltransferase catalytic s... [more]
TRM61_CRYNE1.303e-3740.28tRNA (adenine-N(1)-)-methyltransferase catalytic s... [more]
TRM61_CANAL8.449e-3741.10tRNA (adenine-N(1)-)-methyltransferase catalytic s... [more]
TRM61_DEBHA9.341e-3636.32tRNA (adenine-N(1)-)-methyltransferase catalytic s... [more]
TRM61_SCHPO7.908e-3537.90tRNA (adenine-N(1)-)-methyltransferase catalytic s... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN2CH04RM1 EHR Citrus clementina cDNA clone KN0AAN2CH04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876530 ID=FC876530; Name=FC876530; organism=Citrus clementina; type=EST; length=793bp
TTCTCTCTGCCTCTCAGATTTTGCTGTCTGACTTCCTGAACCCGTCACAA
TTTTATTTGCAGATAATTGCTTGGTTTTAGTAACTCTTTGATAATTTAAA
GGATGTTGCCAACTGATCCAACGAAAAAGATATCCTTTACTCGATGCATT
AAAGAAGGGGACTTGGTTATTGTCTATGAGAGGCATGACTGCATGAAAGC
TGTTAAAGTATGCCAGAACTCAGCTTTCCAGAACCGTTTTGGTGCGTTTA
AACATTCAGACTGGATTGGGAAGCCCTTTGGGTCTATGGTGTTCAGTAAC
AAGGGCGGATTTGTTTACTTGTTAGCCCCAACTCCGGAGTTATGGACTCT
GGTTTTGAGCCATAGAACTCAGATACTTTACATTGCAGATATTAGCTTTG
TCATCATGTACTTAGAACTTGTTCCTGGTTGTTTGGTTCTGGAGTCAGGG
ACTGGAAGTGGATCTTTGACAACCTCTCTTGCAAGGGCTGTAGCTCCTAC
AGGACATGTCTATACTTTTGATTTTCATGAGCAAAGGGCTGCCTCAGCTA
GGGAAGACTTTGAGAGGACAGGAGTGAGCAGTTTTGTTACTGTGGGTGTT
AGAGATATCCAGGGTCAGGGATTTCCTGATGAATTTAGTGGGTTAGCTGA
TTCTATATTTCTGGACCTACCTCAGCCCTGGCTGGCAATTCCATCAGCAA
AGAAAATGTTGAAACAAGATGGGATTCTGTGTTCTTTCTCACCATGTATT
GAGCAAGTGCAGCGCTCATGTGAATCTCTACGGTTGAATTTTA
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