FC876531

Overview
NameFC876531
Unique NameFC876531
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length865
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10383 contig Ccv1_Contig10383:1..865. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876531 vs. ExPASy Swiss-Prot
Match: TM9S3_HUMAN (Transmembrane 9 superfamily member 3 OS=Homo sapiens GN=TM9SF3 PE=1 SV=2)

HSP 1 Score: 173.326 bits (438), Expect = 1.547e-42
Identity = 85/202 (42.08%), Postives = 125/202 (61.88%), Query Frame = 1
Query:  259 ESDHKYQQDEPVTLWVNKVGPYNNPQETYNYYSLPFCHASGNPAHKWXXXXXXXXXXXXID-SQIDIKFQRNVDKASICSLDLDEAKVKQFKDAIENNYWFEFFLDDLPLWGFVGDLHPDKNSDNGKHVLYTHKIINFKYNKDQIIHVNLTQDGPKPLEVGRTLDMTYSVKWTPTNVTFARRFDVYLDYPFFEHQIPWFLLF 861
            E +H YQ  E V LW+N VGPY+N QETY Y+SLPFC  S      +            ++ S +DIKF+ +V  A+ C +DLD+ K   F  AI+N+YW++ ++DDLP+WG VG+   D+N ++  + L+T+K +   +N ++I+ VNLT +G   L     + M+YSVKW  ++V F  RFD YLD  FF+H+I WF +F
Sbjct:   30 EHEHTYQDKEEVVLWMNTVGPYHNRQETYKYFSLPFCVGSKKSISHYHETLGEALQGVELEFSGLDIKFKDDVMPATYCEIDLDKEKRDAFVYAIKNHYWYQMYIDDLPIWGIVGEA--DENGED--YYLWTYKKLEIGFNGNRIVDVNLTSEGKVKLVPNTKIQMSYSVKWKKSDVKFEDRFDKYLDPSFFQHRIHWFSIF 227          
BLAST of FC876531 vs. ExPASy Swiss-Prot
Match: TM9S3_MOUSE (Transmembrane 9 superfamily member 3 OS=Mus musculus GN=Tm9sf3 PE=1 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 4.501e-42
Identity = 84/202 (41.58%), Postives = 124/202 (61.39%), Query Frame = 1
Query:  259 ESDHKYQQDEPVTLWVNKVGPYNNPQETYNYYSLPFCHASGNPAHKWXXXXXXXXXXXXID-SQIDIKFQRNVDKASICSLDLDEAKVKQFKDAIENNYWFEFFLDDLPLWGFVGDLHPDKNSDNGKHVLYTHKIINFKYNKDQIIHVNLTQDGPKPLEVGRTLDMTYSVKWTPTNVTFARRFDVYLDYPFFEHQIPWFLLF 861
            E +H YQ  E V LW+N VGPY+N QETY Y+SLPFC  S      +            ++ S +DIKF+ +V   + C +DLD+ K   F  AI+N+YW++ ++DDLP+WG VG+   D+N ++  + L+T+K +   +N ++I+ VNLT +G   L     + M+YSVKW  ++V F  RFD YLD  FF+H+I WF +F
Sbjct:   28 EHEHTYQDKEEVVLWMNTVGPYHNRQETYKYFSLPFCVGSKKSISHYHETLGEALQGVELEFSGLDIKFKDDVMPGTYCEIDLDKEKRDAFVYAIKNHYWYQMYIDDLPIWGIVGEA--DENGED--YYLWTYKKLEIGFNGNRIVDVNLTSEGKVKLVPNTKIQMSYSVKWKKSDVKFEDRFDKYLDPSFFQHRIHWFSIF 225          
BLAST of FC876531 vs. ExPASy Swiss-Prot
Match: PHG1B_DICDI (Putative phagocytic receptor 1b OS=Dictyostelium discoideum GN=phg1b PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.562e-29
Identity = 68/198 (34.34%), Postives = 108/198 (54.55%), Query Frame = 1
Query:  268 HKYQQDEPVTLWVNKVGPYNNPQETYNYYSLPFCHASGNPAHKWXXXXXXXXXXXXIDSQIDIKFQRNVDKASICSLDLDEAKVKQFKDAIENNYWFEFFLDDLPLWGFVGDLHPDKNSDNGKHVLYTHKIINFKYNKDQIIHVNLTQDGPKPLEVGR----TLDMTYSVKWTPTNVTFARRFDVYLDYPFFEHQIPW 849
            H +++++ V  +VN VGPY+NP ETY +Y+LPFC  S + ++K             + S     F+ + +   +C   L +  +++FK AI   Y+ E   DDLP++ FVG +  D +  N ++ LY H    F YN DQ+I VN+  +  K +E+      TL +TYS KW PT   F++R D+Y ++   E +I W
Sbjct:   27 HHFKENDEVPFYVNNVGPYSNPTETYEFYTLPFCKPS-SISYKKTKLGEILQGDSAVLSDYQFPFKSSFENKQLCEYTLKKEDIEKFKKAIGEYYYAEMIYDDLPIFSFVGTV-DDSDLTNIRYYLYNHIPFEFDYNGDQVIRVNIDTEHIKVIELSDQDEITLKLTYSAKWQPTEHEFSKRMDLYEEFFTKELEIHW 222          
BLAST of FC876531 vs. ExPASy Swiss-Prot
Match: TM9S1_RAT (Transmembrane 9 superfamily member 1 OS=Rattus norvegicus GN=Tm9sf1 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.190e-26
Identity = 67/179 (37.43%), Postives = 100/179 (55.87%), Query Frame = 1
Query:  274 YQQDEPVTLWVNKVGPYNNPQETYNYYSLPFCHASGNPAHKWXXXXXXXXXXXXIDSQIDIKFQRNVDKASICSLDLDEAKVKQFKDAIENNYWFEFFLDDLPLWGFVGDLHPDKNSDNGKHV-LYTHKIINFKYNKDQIIHVNLTQDGPKPLEVGRT-------LDMTYSVKWTPTNV 786
            Y+  +PV L+VNKVGPY+NPQETY+YY LP C       HK              +S  +I+F+ NV+K  +C + L  A+V+Q + AIE  Y+FEF +DDLP+ GFVG +       +   + L+TH   + +++ D+II  N++    KP  +          L  TYSV+W+ T+V
Sbjct:   36 YKPGDPVILYVNKVGPYHNPQETYHYYQLPVC-CPEKIRHKSLSLGEVLDGDRMAESLYEIRFRENVEKRILCHMQLSSAQVEQLRQAIEELYYFEFVVDDLPIRGFVGYMEESGFLPHSHKIGLWTHLDFHLEFHGDRIIFANVSVRDVKPHSLDGLRSDELLGLTHTYSVRWSETSV 213          
BLAST of FC876531 vs. ExPASy Swiss-Prot
Match: TM9S1_MOUSE (Transmembrane 9 superfamily member 1 OS=Mus musculus GN=Tm9sf1 PE=2 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 1.190e-26
Identity = 67/179 (37.43%), Postives = 100/179 (55.87%), Query Frame = 1
Query:  274 YQQDEPVTLWVNKVGPYNNPQETYNYYSLPFCHASGNPAHKWXXXXXXXXXXXXIDSQIDIKFQRNVDKASICSLDLDEAKVKQFKDAIENNYWFEFFLDDLPLWGFVGDLHPDKNSDNGKHV-LYTHKIINFKYNKDQIIHVNLTQDGPKPLEVGRT-------LDMTYSVKWTPTNV 786
            Y+  +PV L+VNKVGPY+NPQETY+YY LP C       HK              +S  +I+F+ NV+K  +C + L  A+V+Q + AIE  Y+FEF +DDLP+ GFVG +       +   + L+TH   + +++ D+II  N++    KP  +          L  TYSV+W+ T+V
Sbjct:   36 YKPGDPVILYVNKVGPYHNPQETYHYYQLPVC-CPEKIRHKSLSLGEVLDGDRMAESLYEIRFRENVEKRILCHMQLSSAQVEQLRQAIEELYYFEFVVDDLPIRGFVGYMEESGFLPHSHKIGLWTHLDFHLEFHGDRIIFANVSVRDVKPHSLDGLRSDELLGLTHTYSVRWSETSV 213          
BLAST of FC876531 vs. ExPASy Swiss-Prot
Match: TM9S1_HUMAN (Transmembrane 9 superfamily member 1 OS=Homo sapiens GN=TM9SF1 PE=2 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 1.190e-26
Identity = 69/180 (38.33%), Postives = 102/180 (56.67%), Query Frame = 1
Query:  274 YQQDEPVTLWVNKVGPYNNPQETYNYYSLPFCHASGNPAHKWXXXXXXXXXXXXIDSQIDIKFQRNVDKASICSLDLDEAKVKQFKDAIENNYWFEFFLDDLPLWGFVGDLHPDKNSDNGKHV-LYTHKIINFKYNKDQIIHVNL--------TQDGPKPLEVGRTLDMTYSVKWTPTNV 786
            Y+  +PV L+VNKVGPY+NPQETY+YY LP C       HK              +S  +I+F+ NV+K  +C + L  A+V+Q + AIE  Y+FEF +DDLP+ GFVG +       +   + L+TH   + +++ D+II  N+        + DG +P E    L  TYSV+W+ T+V
Sbjct:   36 YKAGDPVILYVNKVGPYHNPQETYHYYQLPVC-CPEKIRHKSLSLGEVLDGDRMAESLYEIRFRENVEKRILCHMQLSSAQVEQLRQAIEELYYFEFVVDDLPIRGFVGYMEESGFLPHSHKIGLWTHLDFHLEFHGDRIIFANVSVRDVKPHSLDGLRPDEF-LGLTHTYSVRWSETSV 213          
BLAST of FC876531 vs. ExPASy Swiss-Prot
Match: TM9S1_BOVIN (Transmembrane 9 superfamily member 1 OS=Bos taurus GN=TM9SF1 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.190e-26
Identity = 69/180 (38.33%), Postives = 102/180 (56.67%), Query Frame = 1
Query:  274 YQQDEPVTLWVNKVGPYNNPQETYNYYSLPFCHASGNPAHKWXXXXXXXXXXXXIDSQIDIKFQRNVDKASICSLDLDEAKVKQFKDAIENNYWFEFFLDDLPLWGFVGDLHPDKNSDNGKHV-LYTHKIINFKYNKDQIIHVNL--------TQDGPKPLEVGRTLDMTYSVKWTPTNV 786
            Y+  +PV L+VNKVGPY+NPQETY+YY LP C       HK              +S  +I+F+ NV+K  +C + L  A+V+Q + AIE  Y+FEF +DDLP+ GFVG +       +   + L+TH   + +++ D+II  N+        + DG +P E    L  TYSV+W+ T+V
Sbjct:   36 YKAGDPVILYVNKVGPYHNPQETYHYYQLPVC-CPEKIRHKSLSLGEVLDGDRMAESLYEIRFRENVEKRVLCHMQLSSAQVEQLRQAIEELYYFEFVVDDLPIRGFVGYMEESGFLPHSHKIGLWTHLDFHLEFHGDRIIFANVSVRDVKPHSLDGLRPDEF-LGLTHTYSVRWSETSV 213          
BLAST of FC876531 vs. ExPASy Swiss-Prot
Match: TM9S1_PONAB (Transmembrane 9 superfamily member 1 OS=Pongo abelii GN=TM9SF1 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.651e-26
Identity = 68/179 (37.99%), Postives = 100/179 (55.87%), Query Frame = 1
Query:  274 YQQDEPVTLWVNKVGPYNNPQETYNYYSLPFCHASGNPAHKWXXXXXXXXXXXXIDSQIDIKFQRNVDKASICSLDLDEAKVKQFKDAIENNYWFEFFLDDLPLWGFVGDLHPDKNSDNGKHV-LYTHKIINFKYNKDQIIHVNLTQDGPKP-----LEVGRTLDMT--YSVKWTPTNV 786
            Y+  +PV L+VNKVGPY+NPQETY+YY LP C       HK              +S  +I+F+ NV+K  +C + L  A+V+Q + AIE  Y+FEF +DDLP+ GFVG +       +   + L+TH   + ++  D+II  N++    KP     L     L +T  YSV+W+ T+V
Sbjct:   36 YKAGDPVILYVNKVGPYHNPQETYHYYQLPVC-CPEKIRHKSLSLGEVLDGDRMAESLYEIRFRENVEKRILCHMQLSSAQVEQLRQAIEELYYFEFVVDDLPIRGFVGYMEESGFLPHSHKIGLWTHLDFHLEFRGDRIIFANVSVRDVKPHSLDGLRPDEFLGLTHAYSVRWSETSV 213          
The following BLAST results are available for this feature:
BLAST of FC876531 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
TM9S3_HUMAN1.547e-4242.08Transmembrane 9 superfamily member 3 OS=Homo sapie... [more]
TM9S3_MOUSE4.501e-4241.58Transmembrane 9 superfamily member 3 OS=Mus muscul... [more]
PHG1B_DICDI2.562e-2934.34Putative phagocytic receptor 1b OS=Dictyostelium d... [more]
TM9S1_RAT1.190e-2637.43Transmembrane 9 superfamily member 1 OS=Rattus nor... [more]
TM9S1_MOUSE1.190e-2637.43Transmembrane 9 superfamily member 1 OS=Mus muscul... [more]
TM9S1_HUMAN1.190e-2638.33Transmembrane 9 superfamily member 1 OS=Homo sapie... [more]
TM9S1_BOVIN1.190e-2638.33Transmembrane 9 superfamily member 1 OS=Bos taurus... [more]
TM9S1_PONAB2.651e-2637.99Transmembrane 9 superfamily member 1 OS=Pongo abel... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAN2CH05RM1 EHR Citrus clementina cDNA clone KN0AAN2CH05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876531 ID=FC876531; Name=FC876531; organism=Citrus clementina; type=EST; length=865bp
CGGCACGAGGGTCAATTGGGTGTCGATTTATACTAAAATAATTAATTTCT
CTCTTTAAAGGACGGGCCAAGGCTGATAAGGCACAAAGTCTCATTTCAAG
TTGAGGGGAGTCAGCCAGAGGCTGTTTACAGACACCTTGATCTTGAAATC
AGGACCGTCCGATTTCACTCGCTGGTCGATCGCATCGTCATGTCCTCCGC
CGCTCGATCTCTCTCCCTTTTCCTCCTCCTGCTCTTCGTCTCCCCTTCTC
TAGCCTCCGAGTCAGATCACAAGTATCAACAAGATGAACCTGTTACCCTA
TGGGTAAATAAGGTTGGCCCGTATAACAATCCACAAGAAACTTATAACTA
TTACAGTCTTCCATTTTGCCATGCATCTGGCAATCCTGCGCACAAATGGG
GCGGTCTTGGTGAGGTCCTGGGTGGAAATGAACTTATTGACAGTCAAATA
GACATAAAGTTCCAAAGGAATGTTGACAAAGCCTCCATCTGTTCATTGGA
TCTTGATGAGGCAAAGGTCAAACAATTCAAAGATGCAATTGAGAACAATT
ATTGGTTTGAATTCTTCTTGGATGATCTGCCTTTATGGGGCTTTGTTGGT
GATCTGCATCCTGATAAGAACAGTGATAATGGGAAGCACGTCCTCTACAC
ACACAAGATTATAAATTTTAAATACAATAAAGATCAGATTATTCATGTTA
ATCTCACTCAAGACGGCCCAAAGCCTCTGGAAGTTGGGAGGACACTGGAC
ATGACATACTCAGTCAAATGGACTCCAACTAATGTCACTTTTGCGCGTCG
TTTTGATGTATATTTGGACTACCCTTTCTTTGAGCACCAGATCCCTTGGT
TTCTCCTTTTTCAAT
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