FC876581

Overview
NameFC876581
Unique NameFC876581
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length664
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10417 contig Ccv1_Contig10417:6..669. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876581 vs. ExPASy Swiss-Prot
Match: C3H11_ORYSJ (Zinc finger CCCH domain-containing protein 11 OS=Oryza sativa subsp. japonica GN=Os01g0834700 PE=2 SV=2)

HSP 1 Score: 336.65 bits (862), Expect = 6.718e-92
Identity = 162/202 (80.20%), Postives = 172/202 (85.15%), Query Frame = 2
Query:   65 MPPKQQ--SKAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNVQPKPDQSKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYKAGQCQKGFKCKFSHDLNVQRKGEKIDIYSDKRDKETMEDWDQETLEKVVESKNKEYQQNKPTDIVCKYFLEAVEKKQYGWFWVCPNGGKDWHYRHALSPGNV 664
            MPPK+   SKA+LAKKQK+VEDKTFGLKNKNKSKNVQKYVQ+L Q VQPKPD +K                LNDLFK+AVSQPKVPVGVDPKSI+CEF+K GQCQKGFKCKFSHDLNVQRKGEKIDIY+DKRD ETMEDWDQETLEKVV SK  EYQQNKPTDIVCKYFL+AVEKKQYGWFWVCPNGGKD HYRHAL PG V
Sbjct:    1 MPPKKAAPSKADLAKKQKVVEDKTFGLKNKNKSKNVQKYVQSLHQAVQPKPDPTKTAAKKKKEEEKAREKELNDLFKVAVSQPKVPVGVDPKSIVCEFFKVGQCQKGFKCKFSHDLNVQRKGEKIDIYTDKRDAETMEDWDQETLEKVVASKGAEYQQNKPTDIVCKYFLDAVEKKQYGWFWVCPNGGKDCHYRHALPPGYV 202          
BLAST of FC876581 vs. ExPASy Swiss-Prot
Match: C3H21_ARATH (Zinc finger CCCH domain-containing protein 21 OS=Arabidopsis thaliana GN=At2g20280 PE=2 SV=1)

HSP 1 Score: 330.872 bits (847), Expect = 3.686e-90
Identity = 157/201 (78.11%), Postives = 172/201 (85.57%), Query Frame = 2
Query:   65 MPPKQQSKAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNVQPKPDQSKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYKAGQCQKGFKCKFSHDLNVQRKGEKIDIYSDKRDKE-TMEDWDQETLEKVVESKNKEYQQNKPTDIVCKYFLEAVEKKQYGWFWVCPNGGKDWHYRHALSPGNV 664
            MPPKQQ KA+LAKKQK VEDKTFGLKNKNKSKNVQKYVQ+LKQ+VQPKPD +K                LN+LFK+A+SQPKVPVGVDPKSILCEF+KAGQCQKGFKCKFSHDLN+QRKGEKIDIYSD RD++  M++WDQETLEKVVESK  EY QNKPTDIVCKYFL+AVEKKQYGWFW CPNGGK+ HYRHAL PG V
Sbjct:    1 MPPKQQPKADLAKKQKQVEDKTFGLKNKNKSKNVQKYVQSLKQSVQPKPDATKAAAKKKKEEEKAREQELNELFKVAISQPKVPVGVDPKSILCEFFKAGQCQKGFKCKFSHDLNIQRKGEKIDIYSDTRDEDGDMDEWDQETLEKVVESKKNEYNQNKPTDIVCKYFLDAVEKKQYGWFWSCPNGGKECHYRHALPPGYV 201          
BLAST of FC876581 vs. ExPASy Swiss-Prot
Match: ZC3HF_RAT (Zinc finger CCCH domain-containing protein 15 OS=Rattus norvegicus GN=Zc3h15 PE=2 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 1.674e-50
Identity = 106/217 (48.85%), Postives = 139/217 (64.06%), Query Frame = 2
Query:   65 MPPKQQS------KAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNV---QPKPDQ---SKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYKAGQCQKGFKCKFSHDLNVQRKGEKIDIYSDKRD----KETMEDWDQETLEKVVESKNKEYQQNKP-TDIVCKYFLEAVEKKQYGWFWVCPNGGKDWHYRHALSPGNV 664
            MPPK+Q+      KAE  KK+KI+EDKTFGLKNK  +K  QK+++ +   V   Q  P Q   S+                LN+LFK  V+  K+  G DPKS++C F+K GQC KG KCKFSHDL ++RK EK  +Y D RD    K+TM++WD++ LE+VV  K+ E ++ KP T IVC++FLEA+E  +YGWFWVCP GG +  YRHAL PG V
Sbjct:    1 MPPKKQAQAGGSKKAEQKKKEKIIEDKTFGLKNKKGAKQ-QKFIKAVTHQVKFGQQNPRQVAQSEAEKKLKKDDKKKELQELNELFKPVVAAQKISKGADPKSVVCAFFKQGQCTKGDKCKFSHDLTLERKCEKRSVYIDARDEELEKDTMDNWDEKKLEEVVNKKHGEAEKKKPKTQIVCRHFLEAIENNKYGWFWVCPGGGDNCMYRHALPPGFV 216          
BLAST of FC876581 vs. ExPASy Swiss-Prot
Match: ZC3HF_MOUSE (Zinc finger CCCH domain-containing protein 15 OS=Mus musculus GN=Zc3h15 PE=1 SV=2)

HSP 1 Score: 199.134 bits (505), Expect = 1.674e-50
Identity = 106/217 (48.85%), Postives = 139/217 (64.06%), Query Frame = 2
Query:   65 MPPKQQS------KAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNV---QPKPDQ---SKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYKAGQCQKGFKCKFSHDLNVQRKGEKIDIYSDKRD----KETMEDWDQETLEKVVESKNKEYQQNKP-TDIVCKYFLEAVEKKQYGWFWVCPNGGKDWHYRHALSPGNV 664
            MPPK+Q+      KAE  KK+KI+EDKTFGLKNK  +K  QK+++ +   V   Q  P Q   S+                LN+LFK  V+  K+  G DPKS++C F+K GQC KG KCKFSHDL ++RK EK  +Y D RD    K+TM++WD++ LE+VV  K+ E ++ KP T IVC++FLEA+E  +YGWFWVCP GG +  YRHAL PG V
Sbjct:    1 MPPKKQAQAGGSKKAEQKKKEKIIEDKTFGLKNKKGAKQ-QKFIKAVTHQVKFGQQNPRQVAQSEAEKKLKKDDKKKELQELNELFKPVVAAQKISKGADPKSVVCAFFKQGQCTKGDKCKFSHDLTLERKCEKRSVYIDARDEELEKDTMDNWDEKKLEEVVNKKHGEAEKKKPKTQIVCRHFLEAIENNKYGWFWVCPGGGDNCMYRHALPPGFV 216          
BLAST of FC876581 vs. ExPASy Swiss-Prot
Match: ZC3HF_HUMAN (Zinc finger CCCH domain-containing protein 15 OS=Homo sapiens GN=ZC3H15 PE=1 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 2.186e-50
Identity = 107/217 (49.31%), Postives = 138/217 (63.59%), Query Frame = 2
Query:   65 MPPKQQS------KAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNV---QPKPDQ---SKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYKAGQCQKGFKCKFSHDLNVQRKGEKIDIYSDKRD----KETMEDWDQETLEKVVESKNKEYQQNKP-TDIVCKYFLEAVEKKQYGWFWVCPNGGKDWHYRHALSPGNV 664
            MPPK+Q+      KAE  KK+KI+EDKTFGLKNK  +K  QK+++ +   V   Q  P Q   S+                LN+LFK  V+  K+  G DPKS++C F+K GQC KG KCKFSHDL ++RK EK  +Y D RD    K+TM++WD++ LE+VV  K+ E ++ KP T IVCK+FLEA+E  +YGWFWVCP GG    YRHAL PG V
Sbjct:    1 MPPKKQAQAGGSKKAEQKKKEKIIEDKTFGLKNKKGAKQ-QKFIKAVTHQVKFGQQNPRQVAQSEAEKKLKKDDKKKELQELNELFKPVVAAQKISKGADPKSVVCAFFKQGQCTKGDKCKFSHDLTLERKCEKRSVYIDARDEELEKDTMDNWDEKKLEEVVNKKHGEAEKKKPKTQIVCKHFLEAIENNKYGWFWVCPGGGDICMYRHALPPGFV 216          
BLAST of FC876581 vs. ExPASy Swiss-Prot
Match: ZC3HF_BOVIN (Zinc finger CCCH domain-containing protein 15 OS=Bos taurus GN=ZC3H15 PE=2 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 2.186e-50
Identity = 107/217 (49.31%), Postives = 138/217 (63.59%), Query Frame = 2
Query:   65 MPPKQQS------KAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNV---QPKPDQ---SKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYKAGQCQKGFKCKFSHDLNVQRKGEKIDIYSDKRD----KETMEDWDQETLEKVVESKNKEYQQNKP-TDIVCKYFLEAVEKKQYGWFWVCPNGGKDWHYRHALSPGNV 664
            MPPK+Q+      KAE  KK+KI+EDKTFGLKNK  +K  QK+++ +   V   Q  P Q   S+                LN+LFK  V+  K+  G DPKS++C F+K GQC KG KCKFSHDL ++RK EK  +Y D RD    K+TM++WD++ LE+VV  K+ E ++ KP T IVCK+FLEA+E  +YGWFWVCP GG    YRHAL PG V
Sbjct:    1 MPPKKQAQAGGSKKAEQKKKEKIIEDKTFGLKNKKGAKQ-QKFIKAVTHQVKFGQQNPRQVAQSEAEKKLKKDDKKKELQELNELFKPVVAAQKISKGADPKSVVCAFFKQGQCTKGDKCKFSHDLTLERKCEKRSVYIDARDEELEKDTMDNWDEKKLEEVVNKKHGEAEKKKPKTQIVCKHFLEAIENNKYGWFWVCPGGGDICMYRHALPPGFV 216          
BLAST of FC876581 vs. ExPASy Swiss-Prot
Match: ZC3HF_XENTR (Zinc finger CCCH domain-containing protein 15 OS=Xenopus tropicalis GN=zc3h15 PE=2 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 3.729e-50
Identity = 106/209 (50.72%), Postives = 134/209 (64.11%), Query Frame = 2
Query:   71 PKQQSKAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNV---QPKPD---QSKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYKAGQCQKGFKCKFSHDLNVQRKGEKIDIYSDKRD----KETMEDWDQETLEKVVESKNKEYQQNKP-TDIVCKYFLEAVEKKQYGWFWVCPNGGKDWHYRHALSPGNV 664
            P+   K E  KK+KI+EDKTFGLKNK  +K  QK+++N+   V   Q  P    Q++                LNDLFK  V+  KV  G DPKS++C FYK GQC KG KCKFSHDL+++RK EK  +Y D RD    K+TME+WD++ LE+VV  K+ E ++ KP T IVCK+FLEA+E  +YGWFWVCP GG    YRHAL PG V
Sbjct:   10 PQSGKKTEQKKKEKIIEDKTFGLKNKKGAKQ-QKFIKNVIHQVKFGQQNPRLVAQAEGEKKTKKDDKKKELLELNDLFKPVVAAQKVSKGADPKSVVCAFYKQGQCTKGDKCKFSHDLSLERKCEKRSVYVDGRDEELEKDTMENWDEKKLEEVVNKKHGEAEKIKPKTQIVCKFFLEAIENNKYGWFWVCPGGGDMCMYRHALPPGFV 217          
BLAST of FC876581 vs. ExPASy Swiss-Prot
Match: ZC3HF_CHICK (Zinc finger CCCH domain-containing protein 15 OS=Gallus gallus GN=ZC3H15 PE=1 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 1.851e-49
Identity = 105/217 (48.39%), Postives = 138/217 (63.59%), Query Frame = 2
Query:   65 MPPKQQS-------KAELAKKQKIVEDKTFGLKNKNKSKNVQ--KYVQNLKQNVQPKPDQS---KVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYKAGQCQKGFKCKFSHDLNVQRKGEKIDIYSDKRD----KETMEDWDQETLEKVVESKNKEYQQNKP-TDIVCKYFLEAVEKKQYGWFWVCPNGGKDWHYRHALSPGNV 664
            MPPK+Q        KA+  KK+KI+EDKTFGLKNK  +K  +  K V +L +  Q  P Q+   +                LN+LFK  V+  K+  G DPKS++C F+K GQC KG KCKFSHDL+++RK EK  +Y D RD    K+TM++WD++ LE+VV  K+ E ++ KP T IVCKYFL+A+E  +YGWFWVCP GG +  YRHAL PG V
Sbjct:    1 MPPKKQQQPAGSSKKADQKKKEKIIEDKTFGLKNKKGAKQQKFFKAVTHLVKFGQQYPRQAAQTESEKKLKKEDKKKELQELNELFKPVVAAQKISKGADPKSVVCAFFKQGQCTKGDKCKFSHDLSLERKCEKRSVYIDARDEDLEKDTMDNWDEKKLEEVVNKKHGEAEKKKPKTQIVCKYFLDAIENNKYGWFWVCPGGGDNCMYRHALPPGFV 217          
BLAST of FC876581 vs. ExPASy Swiss-Prot
Match: ZC3HF_XENLA (Zinc finger CCCH domain-containing protein 15 OS=Xenopus laevis GN=zc3h15 PE=2 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 5.385e-49
Identity = 104/209 (49.76%), Postives = 132/209 (63.16%), Query Frame = 2
Query:   71 PKQQSKAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNV---QPKPD---QSKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYKAGQCQKGFKCKFSHDLNVQRKGEKIDIYSDKRD----KETMEDWDQETLEKVVESKNKEYQQNK-PTDIVCKYFLEAVEKKQYGWFWVCPNGGKDWHYRHALSPGNV 664
            P+   K E  KK+KI+EDKTFGLKNK  +K  QK+++N+   V   Q  P    Q++                LNDLFK  V   KV  G DPKS++C F+K GQC KG KCKFSHDL+++RK EK  +Y D RD    K+TME+WD++ LE+VV  K+ E ++ K  T IVCK+FLEA+E  +YGWFWVCP GG    YRHAL PG V
Sbjct:   10 PQASKKTEQKKKEKIIEDKTFGLKNKKGAKQ-QKFIKNVTHQVKSGQQNPRLVAQAEGDKKNKKDDKMKELQELNDLFKPVVVAQKVSKGADPKSVVCAFFKQGQCTKGDKCKFSHDLSLERKCEKRSVYVDGRDDELEKDTMENWDEKKLEEVVNKKHGEAEKIKAKTQIVCKFFLEAIENNKYGWFWVCPGGGDTCMYRHALPPGFV 217          
BLAST of FC876581 vs. ExPASy Swiss-Prot
Match: ZC3HF_DICDI (Zinc finger CCCH domain-containing protein 15 homolog OS=Dictyostelium discoideum GN=DDB_G0292410 PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.200e-48
Identity = 103/207 (49.76%), Postives = 130/207 (62.80%), Query Frame = 2
Query:   65 MPPKQ-QSKAELAK-KQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNV-----QPKPDQSKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYKAG-QCQKGFKCKFSHDLNVQRKGEKIDIYSDKR-DKETMEDWDQETLEKVVESKNKEYQQNKPTDIVCKYFLEAVEKKQYGWFWVCPNGGKDWHYRHALSPG 658
            MPPKQ QSK  + K K+K VEDKTFGLKNKNKSK V  YV  ++  V     Q K    K                   +    + Q KVP+GVDPKSI+CE++K G  C KG +CKF+HDL   RK EKIDIY+D+R D++TME+WD+  L+ VVE K     + KPT I+CK+FL+A+E K+YGWFW CPNGG+   Y+H L  G
Sbjct:    1 MPPKQAQSKKTVEKEKKKKVEDKTFGLKNKNKSKKVAAYVSQVEAQVKHSGLQNKEAALKEKAKRDKELAEKAKKEAESILVNTIVQSKVPLGVDPKSIVCEYFKQGVTCPKGNRCKFAHDLAAGRKSEKIDIYTDRRKDEDTMENWDEAKLKSVVEKKRTTENKAKPTAIICKFFLDAIESKKYGWFWECPNGGEKCAYQHCLPEG 207          
The following BLAST results are available for this feature:
BLAST of FC876581 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
C3H11_ORYSJ6.718e-9280.20Zinc finger CCCH domain-containing protein 11 OS=O... [more]
C3H21_ARATH3.686e-9078.11Zinc finger CCCH domain-containing protein 21 OS=A... [more]
ZC3HF_RAT1.674e-5048.85Zinc finger CCCH domain-containing protein 15 OS=R... [more]
ZC3HF_MOUSE1.674e-5048.85Zinc finger CCCH domain-containing protein 15 OS=M... [more]
ZC3HF_HUMAN2.186e-5049.31Zinc finger CCCH domain-containing protein 15 OS=H... [more]
ZC3HF_BOVIN2.186e-5049.31Zinc finger CCCH domain-containing protein 15 OS=B... [more]
ZC3HF_XENTR3.729e-5050.72Zinc finger CCCH domain-containing protein 15 OS=X... [more]
ZC3HF_CHICK1.851e-4948.39Zinc finger CCCH domain-containing protein 15 OS=G... [more]
ZC3HF_XENLA5.385e-4949.76Zinc finger CCCH domain-containing protein 15 OS=X... [more]
ZC3HF_DICDI1.200e-4849.76Zinc finger CCCH domain-containing protein 15 homo... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN2DB04RM1 EHR Citrus clementina cDNA clone KN0AAN2DB04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876581 ID=FC876581; Name=FC876581; organism=Citrus clementina; type=EST; length=664bp
GCACGAGGAATTAAATCAAGGATATTTTATTTTGTCTTGTTATTGAATTT
GATGATCATAAAAGATGCCGCCGAAGCAGCAATCGAAAGCAGAATTAGCG
AAGAAGCAGAAGATCGTCGAAGACAAGACCTTCGGTCTTAAGAACAAAAA
CAAAAGCAAAAACGTTCAGAAATATGTTCAGAATCTCAAACAGAACGTTC
AGCCAAAACCCGACCAGTCTAAGGTCGCCGCCAAGAAAAAGAAGGAGGAA
GAGAAGGCTAAAGAGAAAGAGCTGAATGATCTGTTCAAGATTGCTGTTAG
TCAGCCTAAAGTTCCAGTTGGTGTTGATCCTAAGTCTATATTGTGCGAGT
TTTATAAAGCGGGACAGTGTCAGAAAGGTTTTAAATGCAAGTTCTCACAT
GATTTGAATGTTCAGAGGAAAGGGGAAAAGATTGACATTTACAGTGACAA
GCGCGACAAAGAAACAATGGAGGATTGGGATCAGGAAACTTTGGAGAAGG
TTGTGGAATCAAAGAATAAGGAATACCAGCAGAACAAACCTACAGATATT
GTTTGTAAATACTTTTTAGAAGCTGTGGAGAAGAAACAGTATGGCTGGTT
TTGGGTCTGCCCAAATGGTGGTAAAGATTGGCATTACAGGCATGCTCTTT
CCCCTGGAAATGTT
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