FC876583

Overview
NameFC876583
Unique NameFC876583
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length607
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10382 contig Ccv1_Contig10382:1..607. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876583 vs. ExPASy Swiss-Prot
Match: TRM61_RAT (tRNA (adenine-N(1)-)-methyltransferase catalytic subunit TRMT61A OS=Rattus norvegicus GN=Trmt61a PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 4.597e-33
Identity = 72/155 (46.45%), Postives = 100/155 (64.52%), Query Frame = 1
Query:  130 ISFTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHS-DWIGKPFGSMVFSNKGGFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVXXXXXXXXXXXXXXARAVAPTGHVYTFDFQEQRAASAREDFERTRVNSFVT 591
            +++   IKEGD  I+   H  M AV+V + +  Q R G  +HS D IG+PFGS V  ++GG+VY+L PTPELWT+ L HRTQILY  DI+ + M LEL PG +V               R++APTGH++T +F +QRA  ARE+F++ RV+ +VT
Sbjct:    4 VAYEELIKEGDTAILSLGHGSMVAVRVQRGAQTQTRHGVLRHSVDLIGRPFGSKVTCSRGGWVYVLHPTPELWTVNLPHRTQILYSTDIALITMMLELRPGSVVCESGTGSGSVSHAIIRSIAPTGHLHTVEFHQQRADKAREEFQQHRVSQWVT 158          
BLAST of FC876583 vs. ExPASy Swiss-Prot
Match: TRM61_HUMAN (tRNA (adenine-N(1)-)-methyltransferase catalytic subunit TRMT61A OS=Homo sapiens GN=TRMT61A PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 4.597e-33
Identity = 73/155 (47.10%), Postives = 96/155 (61.94%), Query Frame = 1
Query:  130 ISFTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHS-DWIGKPFGSMVFSNKGGFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVXXXXXXXXXXXXXXARAVAPTGHVYTFDFQEQRAASAREDFERTRVNSFVT 591
            +++   IKEGD  I+   H  M AV+V + +  Q R G  +HS D IG+PFGS V   +GG+VY+L PTPELWTL L HRTQILY  DI+ + M LEL PG +V               R +APTGH++T +F +QRA  ARE+F+  RV  +VT
Sbjct:    4 VAYEELIKEGDTAILSLGHGAMVAVRVQRGAQTQTRHGVLRHSVDLIGRPFGSKVTCGRGGWVYVLHPTPELWTLNLPHRTQILYSTDIALITMMLELRPGSVVCESGTGSGSVSHAIIRTIAPTGHLHTVEFHQQRAEKAREEFQEHRVGRWVT 158          
BLAST of FC876583 vs. ExPASy Swiss-Prot
Match: TRM61_MOUSE (tRNA (adenine-N(1)-)-methyltransferase catalytic subunit TRMT61A OS=Mus musculus GN=Trmt61a PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 6.003e-33
Identity = 72/155 (46.45%), Postives = 99/155 (63.87%), Query Frame = 1
Query:  130 ISFTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHS-DWIGKPFGSMVFSNKGGFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVXXXXXXXXXXXXXXARAVAPTGHVYTFDFQEQRAASAREDFERTRVNSFVT 591
            +++   IKEGD  I+   H  M AV+V + +  Q R G  +HS D IG+PFGS V  ++GG+VY+L PTPELWT+ L HRTQILY  DI+ + M LEL PG +V               R+VAPTGH++T +F +QRA  ARE+F+  R++ +VT
Sbjct:    4 VAYEELIKEGDTAILSLGHGSMVAVRVQRGAQTQTRHGVLRHSVDLIGRPFGSKVICSRGGWVYVLHPTPELWTVNLPHRTQILYSTDIALITMMLELRPGSVVCESGTGSGSVSHAIIRSVAPTGHLHTVEFHQQRADKAREEFQEHRLSQWVT 158          
BLAST of FC876583 vs. ExPASy Swiss-Prot
Match: TRM61_BOVIN (tRNA (adenine-N(1)-)-methyltransferase catalytic subunit TRMT61A OS=Bos taurus GN=TRMT61A PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.024e-32
Identity = 73/155 (47.10%), Postives = 96/155 (61.94%), Query Frame = 1
Query:  130 ISFTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHS-DWIGKPFGSMVFSNKGGFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVXXXXXXXXXXXXXXARAVAPTGHVYTFDFQEQRAASAREDFERTRVNSFVT 591
            +++   IKEGD  I+   H  M AV+V + +  Q R G  +HS D IG+PFGS V   +GG+VY+L PTPELWTL L HRTQILY  DI+ + M LEL PG +V               R +APTGH++T +F +QRA  ARE+F+  RV  +VT
Sbjct:    4 VAYEELIKEGDTAILSLGHGAMVAVRVQRGAQTQTRHGVLRHSVDLIGRPFGSKVTCGRGGWVYVLHPTPELWTLNLPHRTQILYSTDIALLTMMLELRPGSVVCESGTGSGSVSHAIIRTIAPTGHLHTVEFHQQRAERAREEFQEHRVGRWVT 158          
BLAST of FC876583 vs. ExPASy Swiss-Prot
Match: TRM61_DICDI (tRNA (adenine-N(1)-)-methyltransferase catalytic subunit trmt61a OS=Dictyostelium discoideum GN=trmt61a PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.692e-27
Identity = 60/155 (38.71%), Postives = 94/155 (60.65%), Query Frame = 1
Query:  142 RCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKG-GFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVXXXXXXXXXXXXXXARAVAPTGHVYTFDFQEQRAASAREDFERTRVNSFVTAGSR 603
            + IKEGD V++Y   D M  + +  N+ + ++FG+++H + IGK +GS + S+ G GF +++A TPELW++ L HRTQIL+  DIS +I  LEL  G                 AR +AP GH++TF+F E+R   AR+DF+   ++ ++T   R
Sbjct:    6 KIIKEGDRVVMYNGKDNMAVLTMESNNVYNSKFGSYRHKNIIGKEYGSKLSSDNGNGFCHVIAMTPELWSITLDHRTQILFNLDISTIIFNLELKNGSRAVESGTGSGSLSSSIARTIAPKGHLFTFEFHEERVKFARKDFKDNGLDQYITVTHR 160          
BLAST of FC876583 vs. ExPASy Swiss-Prot
Match: TRM61_KLULA (tRNA (adenine-N(1)-)-methyltransferase catalytic subunit TRM61 OS=Kluyveromyces lactis GN=TRM61 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.900e-24
Identity = 57/144 (39.58%), Postives = 84/144 (58.33%), Query Frame = 1
Query:  148 IKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVF-----SNKGGFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVXXXXXXXXXXXXXXARAVAPTGHVYTFDFQEQRAASAREDFE 564
            IKEGDLV+ +   D +K + V     F  R+GAF HSD IGKPFGS +      SN+ GF+++L PTPELW++ L HRTQI+Y  D S+++  +E  P   V              AR+    GH+++++F E R   A+++F+
Sbjct:   11 IKEGDLVLAWLSRDNLKPITVKAGEVFNTRYGAFSHSDMIGKPFGSQIAIRTKGSNRFGFIHVLQPTPELWSISLPHRTQIVYTPDSSYIMQRMECNPRSRVIEAGTGSGSFSHAFARS---AGHLFSYEFHEVRYEQAKQEFK 151          
BLAST of FC876583 vs. ExPASy Swiss-Prot
Match: TRM61_CANAL (tRNA (adenine-N(1)-)-methyltransferase catalytic subunit TRM61 OS=Candida albicans GN=TRM61 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.528e-23
Identity = 56/146 (38.36%), Postives = 82/146 (56.16%), Query Frame = 1
Query:  148 IKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKG-GFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVXXXXXXXXXXXXXXARAVAPTGHVYTFDFQEQRAASAREDFERTRVNS 582
            I+EGDLV+ Y     +K + V +   F  R+G F+H   IG  +G  +   KG GF++LL PTPELWTL L HRTQI+Y  D S++I  L + PG  V              AR V  +G V+T++F E R   A+++ E  ++++
Sbjct:   10 IEEGDLVLAYISRSTIKPINVKKGEIFNTRYGHFEHDKMIGMKYGEQMPGAKGYGFIHLLHPTPELWTLSLPHRTQIVYSPDSSYIIQRLNVKPGSRVIEAGTGSASFTHSFARTVTLSGKVFTYEFHEPRYLEAKKELEEHKLDN 155          
BLAST of FC876583 vs. ExPASy Swiss-Prot
Match: TRM61_YEAST (tRNA (adenine-N(1)-)-methyltransferase catalytic subunit TRM61 OS=Saccharomyces cerevisiae GN=GCD14 PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 5.632e-23
Identity = 58/144 (40.28%), Postives = 81/144 (56.25%), Query Frame = 1
Query:  148 IKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVF-----SNKGGFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVXXXXXXXXXXXXXXARAVAPTGHVYTFDFQEQRAASAREDFE 564
            IKEGDL +++   D +K V++     F  R+G+F H D IGKP+GS +      SNK  FV++L PTPELWTL L HRTQI+Y  D S+++  L   P   V              AR+V   GH+++F+F   R   A E+F+
Sbjct:   13 IKEGDLTLIWVSRDNIKPVRMHSEEVFNTRYGSFPHKDIIGKPYGSQIAIRTKGSNKFAFVHVLQPTPELWTLSLPHRTQIVYTPDSSYIMQRLNCSPHSRVIEAGTGSGSFSHAFARSV---GHLFSFEFHHIRYEQALEEFK 153          
BLAST of FC876583 vs. ExPASy Swiss-Prot
Match: TRM61_CRYNE (tRNA (adenine-N(1)-)-methyltransferase catalytic subunit TRM61 OS=Cryptococcus neoformans GN=TRM61 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.255e-22
Identity = 55/141 (39.01%), Postives = 82/141 (58.16%), Query Frame = 1
Query:  148 IKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKG--GFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVXXXXXXXXXXXXXXARAVAPTGHVYTFDFQEQRAASAREDFE 564
            I+ GD+VI+Y   D M A+ +     F N++G + H   IG+ +GS + S     G+V++L PTPELWTL L HRTQILY+ DIS++ M L +  G  V              +R+V P+G V +F++  QR  +A ++FE
Sbjct:   14 IEAGDIVILYMARDNMTAITITPGETFHNKYGRYPHDMLIGQKYGSKIHSPPPHPGYVHVLRPTPELWTLSLPHRTQILYLPDISYITMRLGVRVGGKVIEAGTGSGSMTHSLSRSVGPSGQVMSFEYHRQRFETALKEFE 154          
BLAST of FC876583 vs. ExPASy Swiss-Prot
Match: TRM61_CANGA (tRNA (adenine-N(1)-)-methyltransferase catalytic subunit TRM61 OS=Candida glabrata GN=TRM61 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.271e-21
Identity = 53/144 (36.81%), Postives = 79/144 (54.86%), Query Frame = 1
Query:  148 IKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMV-----FSNKGGFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVXXXXXXXXXXXXXXARAVAPTGHVYTFDFQEQRAASAREDFE 564
            I+EGDL +++   D +K V +  N  F  R+G+F H D IGKP+GS +      + K  FV+++ P+PELWTL L HRTQI+Y  D S+++  L   P   V              AR+V   G +Y+++F   R   A E+F+
Sbjct:   12 IQEGDLALIWISRDNIKPVTINANETFNTRYGSFPHKDMIGKPYGSQIAIRTKVAKKFAFVHVMQPSPELWTLSLPHRTQIVYTPDSSYIMQRLNCSPNSRVIEAGTGSGSFSHAFARSV---GQLYSYEFHPVRYEQATEEFK 152          
The following BLAST results are available for this feature:
BLAST of FC876583 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
TRM61_RAT4.597e-3346.45tRNA (adenine-N(1)-)-methyltransferase catalytic s... [more]
TRM61_HUMAN4.597e-3347.10tRNA (adenine-N(1)-)-methyltransferase catalytic s... [more]
TRM61_MOUSE6.003e-3346.45tRNA (adenine-N(1)-)-methyltransferase catalytic s... [more]
TRM61_BOVIN1.024e-3247.10tRNA (adenine-N(1)-)-methyltransferase catalytic s... [more]
TRM61_DICDI1.692e-2738.71tRNA (adenine-N(1)-)-methyltransferase catalytic s... [more]
TRM61_KLULA3.900e-2439.58tRNA (adenine-N(1)-)-methyltransferase catalytic s... [more]
TRM61_CANAL2.528e-2338.36tRNA (adenine-N(1)-)-methyltransferase catalytic s... [more]
TRM61_YEAST5.632e-2340.28tRNA (adenine-N(1)-)-methyltransferase catalytic s... [more]
TRM61_CRYNE1.255e-2239.01tRNA (adenine-N(1)-)-methyltransferase catalytic s... [more]
TRM61_CANGA5.271e-2136.81tRNA (adenine-N(1)-)-methyltransferase catalytic s... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN2DB07RM1 EHR Citrus clementina cDNA clone KN0AAN2DB07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876583 ID=FC876583; Name=FC876583; organism=Citrus clementina; type=EST; length=607bp
TTCTCTCTGCCTCTCAGATTTTGCTGTCTGACTTCCTGAACCCGTCACAA
TTTTATTTGCAGATAATTGCTTGGTTTTAGTAACTCTTTGATAATTTAAA
GGATGTTGCCAACTGATCCAACGAAAAAGATATCCTTTACTCGATGCATT
AAAGAAGGGGACTTGGTTATTGTCTATGAGAGGCATGACTGCATGAAAGC
TGTTAAAGTATGCCAGAACTCAGCTTTCCAGAACCGTTTTGGTGCGTTTA
AACATTCAGACTGGATTGGGAAGCCCTTTGGGTCTATGGTGTTCAGTAAC
AAGGGCGGATTTGTTTACTTGTTAGCCCCAACTCCGGAGTTATGGACTCT
GGTTTTGAGCCATAGAACTCAGATACTTTACATTGCAGATATTAGCTTTG
TCATCATGTACTTAGAACTTGTTCCTGGTTGTTTGGTTCTGGAGTCAGGG
ACTGGAAGTGGATCTTTGACAACCTCTCTTGCAAGGGCTGTAGCTCCTAC
AGGACATGTCTATACTTTTGATTTTCAGGAGCAAAGGGCTGCCTCAGCTA
GGGAAGACTTTGAGAGGACAAGAGTGAACAGTTTTGTTACTGCGGGTAGT
AGAAAAA
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