FC876596

Overview
NameFC876596
Unique NameFC876596
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length635
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14362 contig Ccv1_Contig14362:14..648. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC876596 vs. ExPASy Swiss-Prot
Match: METB_ARATH (Cystathionine gamma-synthase, chloroplastic OS=Arabidopsis thaliana GN=CGS1 PE=2 SV=3)

HSP 1 Score: 80.8777 bits (198), Expect = 6.116e-15
Identity = 43/52 (82.69%), Postives = 45/52 (86.54%), Query Frame = 2 
Query:  479 LADLKNEASFLSSDGSLAIHAGERLXRGIVTDAITTPVVNTSAYFFIKTAEL 634
            L D K+  SFLSSDGSL +HAGERL RGIVTDAITTPVVNTSAYFF KTAEL
Sbjct:  164 LTDSKH--SFLSSDGSLTVHAGERLGRGIVTDAITTPVVNTSAYFFKKTAEL 213

HSP 2 Score: 70.8626 bits (172), Expect = 6.329e-12
Identity = 39/64 (60.94%), Postives = 44/64 (68.75%), Query Frame = 2 
Query:  137 DPDFSGS--ARFDKPRISAARVIGASTASFSGLSSLIFRFPPNFVRQLSTKARRNCSNIGVAQI 322
            DPD  GS      + R+ A+  I +S    +GLSS I RFPPNFVRQLS KARRNCSNIGVAQI
Sbjct:   25 DPDLVGSPVGGSSRRRVHASAGISSSFTGDAGLSSRILRFPPNFVRQLSIKARRNCSNIGVAQI 88
The following BLAST results are available for this feature:
BLAST of FC876596 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
METB_ARATH6.116e-1582.69Cystathionine gamma-synthase, chloroplastic OS=Ara... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAN2DC08RM1 EHR Citrus clementina cDNA clone KN0AAN2DC08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876596 ID=FC876596; Name=FC876596; organism=Citrus clementina; type=EST; length=635bp
GCACGAGGTTCTTATCATAGAATACAGAGAGAGCAAAGCCGCCGTTCAAT
ACGACGTCGTAATGGCCGTGTCCTCATGTTCGAGTCAAAAAATTTTGTCC
TTCTCTTCTTCATGTTCGTCTTTTGAGTGCCGTTCCGATCCCGACTTCTC
GGGCTCGGCTCGGTTTGATAAACCGAGGATCTCGGCGGCGCGAGTCATCG
GAGCGTCGACGGCGTCGTTTAGCGGCCTGTCGTCTCTGATTTTCAGGTTT
CCGCCGAACTTCGTGCGCCAGCTTAGCACGAAGGCCAGGAGGAACTGCAG
CAACATCGGCGTGGCGCAAATCGTGGCGGCTTCGTGGTCGAACGGTGTGG
GTTCCGGCTCTAACTCGGCGGCGGCTGCAGCAGCTTCCGCTGCCCCCGCC
CCGCCCGTCCCCGTCGAGATTACGAGCGGCGATGACATCGCGCTTGTTGA
CGGATTGAAAAATGTACATCTGGAGGCCCTCGCTGATTTGAAAAACGAGG
CTTCGTTTTTGAGCTCCGATGGGAGCCTTGCAATTCATGCCGGTGAAAGA
TTANGTCGTGGTATAGTAACAGATGCAATTACTACCCCAGTGGTGAATAC
TTCTGCTTACTTCTTTATCAAAACTGCTGAGCTTA
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