FC876597

Overview
NameFC876597
Unique NameFC876597
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length555
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10439 contig Ccv1_Contig10439:6..560. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876597 vs. ExPASy Swiss-Prot
Match: RL5_CUCSA (60S ribosomal protein L5 OS=Cucumis sativus GN=RPL5 PE=2 SV=1)

HSP 1 Score: 303.523 bits (776), Expect = 4.432e-82
Identity = 151/182 (82.97%), Postives = 162/182 (89.01%), Query Frame = 1
Query:   10 RARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHXDKRFAGFSKDGKQLDAEVHRKYIFGGHVAAYMITLME 555
            RARIRLINQDKNKYNTPKYRFVVR +NKDI AQI+SA+I GD VLA+AY+HELP+YGLEVGLTNYAAAYCTGLLLARRVLKMLEMD EYEGNVEATGEDYSVEPADTRRPFRALLDVGLI+TTTGNRVF            IPH DKRFAG++K+G+QLD EVHRKYIFGGHVAAYM TLME
Sbjct:   31 RARIRLINQDKNKYNTPKYRFVVRTSNKDITAQIISASIAGDLVLASAYSHELPQYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGYAKNGQQLDVEVHRKYIFGGHVAAYMRTLME 212          
BLAST of FC876597 vs. ExPASy Swiss-Prot
Match: RL52_ARATH (60S ribosomal protein L5-2 OS=Arabidopsis thaliana GN=RPL5B PE=2 SV=3)

HSP 1 Score: 294.278 bits (752), Expect = 2.689e-79
Identity = 146/182 (80.22%), Postives = 157/182 (86.26%), Query Frame = 1
Query:   10 RARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHXDKRFAGFSKDGKQLDAEVHRKYIFGGHVAAYMITLME 555
            RARIRLINQDKNKYNTPKYRFVVRFTNKDI+AQIVSA+I GD V A+AYAHELP+YGL VGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGED+SVEP D+RRPFRALLDVGLI+TTTGNRVF            IPH DKRFAGF K+ KQLDAE+HR YI+GGHV+ YM  L E
Sbjct:   31 RARIRLINQDKNKYNTPKYRFVVRFTNKDIVAQIVSASIAGDIVKASAYAHELPQYGLTVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDFSVEPTDSRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFHKENKQLDAEIHRNYIYGGHVSNYMKLLGE 212          
BLAST of FC876597 vs. ExPASy Swiss-Prot
Match: RL51_ARATH (60S ribosomal protein L5-1 OS=Arabidopsis thaliana GN=ATL5 PE=2 SV=2)

HSP 1 Score: 294.278 bits (752), Expect = 2.689e-79
Identity = 146/182 (80.22%), Postives = 157/182 (86.26%), Query Frame = 1
Query:   10 RARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHXDKRFAGFSKDGKQLDAEVHRKYIFGGHVAAYMITLME 555
            RARIRLINQDKNKYNTPKYRFVVRFTNKDI+AQIVSA+I GD V A+AYAHELP+YGL VGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGED+SVEP D+RRPFRALLDVGLI+TTTGNRVF            IPH DKRFAGF K+ KQLDAE+HR YI+GGHV+ YM  L E
Sbjct:   31 RARIRLINQDKNKYNTPKYRFVVRFTNKDIVAQIVSASIAGDIVKASAYAHELPQYGLTVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDFSVEPTDSRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFHKENKQLDAEIHRNYIYGGHVSNYMKLLGE 212          
BLAST of FC876597 vs. ExPASy Swiss-Prot
Match: RL51_ORYSJ (60S ribosomal protein L5-1 OS=Oryza sativa subsp. japonica GN=RPL5A PE=2 SV=1)

HSP 1 Score: 286.189 bits (731), Expect = 7.322e-77
Identity = 141/182 (77.47%), Postives = 153/182 (84.07%), Query Frame = 1
Query:   10 RARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHXDKRFAGFSKDGKQLDAEVHRKYIFGGHVAAYMITLME 555
            RARIRL NQDKNKYNTPKYRFVVRFTNKDI AQIV A I GD V+AAAY+HELPRYGLEVGLTNYAAAYCTGLLLARRVLK+  +D EYEGN+EATGEDY VEPAD RRPFRALLDVGLI+TTTGNRVF            IPH DKRFAGF KD KQLD+++HRKYI+GGHVA YM ++ E
Sbjct:   32 RARIRLTNQDKNKYNTPKYRFVVRFTNKDITAQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKLRGLDQEYEGNIEATGEDYYVEPADERRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFKKDEKQLDSDIHRKYIYGGHVADYMRSMAE 213          
BLAST of FC876597 vs. ExPASy Swiss-Prot
Match: RL51_ORYSI (60S ribosomal protein L5-1 OS=Oryza sativa subsp. indica GN=RPL5A PE=2 SV=2)

HSP 1 Score: 286.189 bits (731), Expect = 7.322e-77
Identity = 141/182 (77.47%), Postives = 153/182 (84.07%), Query Frame = 1
Query:   10 RARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHXDKRFAGFSKDGKQLDAEVHRKYIFGGHVAAYMITLME 555
            RARIRL NQDKNKYNTPKYRFVVRFTNKDI AQIV A I GD V+AAAY+HELPRYGLEVGLTNYAAAYCTGLLLARRVLK+  +D EYEGN+EATGEDY VEPAD RRPFRALLDVGLI+TTTGNRVF            IPH DKRFAGF KD KQLD+++HRKYI+GGHVA YM ++ E
Sbjct:   32 RARIRLTNQDKNKYNTPKYRFVVRFTNKDITAQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKLRGLDQEYEGNIEATGEDYYVEPADERRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFKKDEKQLDSDIHRKYIYGGHVADYMRSMAE 213          
BLAST of FC876597 vs. ExPASy Swiss-Prot
Match: RL52_ORYSJ (60S ribosomal protein L5-2 OS=Oryza sativa subsp. japonica GN=RPL5B PE=3 SV=1)

HSP 1 Score: 273.092 bits (697), Expect = 6.414e-73
Identity = 138/182 (75.82%), Postives = 149/182 (81.87%), Query Frame = 1
Query:   10 RARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHXDKRFAGFSKDGKQLDAEVHRKYIFGGHVAAYMITLME 555
            RARIRL NQDKNKYNTPKYRFV   TNKDI AQIV A I GD V+AAAY+HELPRYGLEVGLTNYAAAYCTGLLLARRVL +  +D EYEGNVEATGEDY VEPAD RRPFRALLDVGLI+TTTGNRVF            IPH DKRFAGF KD KQLD+++HRKYI+GGHVA YM ++ E
Sbjct:   35 RARIRLTNQDKNKYNTPKYRFV---TNKDITAQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLTLRGLDQEYEGNVEATGEDYYVEPADERRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFKKDEKQLDSDIHRKYIYGGHVADYMRSMAE 213          
BLAST of FC876597 vs. ExPASy Swiss-Prot
Match: RL5_SUBDO (60S ribosomal protein L5 OS=Suberites domuncula GN=RPL5 PE=2 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 3.778e-57
Identity = 112/183 (61.20%), Postives = 132/183 (72.13%), Query Frame = 1
Query:   10 RARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVE-PADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHXDKRFAGFSKDGKQLDAEVHRKYIFGGHVAAYMITLME 555
            RAR RL+ QDKNKYNTPKYR V+RFTN DII QI+ A I GD VL +AYAHELPRYG++VGLTNYAAAYCTGLLLARR+L  L + D+Y G  +  GED++VE   D  RPFRA LDVGL +TTTGNRVF            IPH   RF G+ ++  QL+A+  R+YIFGGHV+ YM  L E
Sbjct:   31 RARKRLVVQDKNKYNTPKYRIVIRFTNTDIICQIIYAKIEGDKVLVSAYAHELPRYGVKVGLTNYAAAYCTGLLLARRLLTNLGLADKYAGQTDIDGEDFNVEHMGDGPRPFRAFLDVGLTRTTTGNRVFAAMKGAVDGGIDIPHSPSRFVGYDEESSQLEADKLRQYIFGGHVSDYMKYLQE 213          
BLAST of FC876597 vs. ExPASy Swiss-Prot
Match: RL5_CAEEL (60S ribosomal protein L5 OS=Caenorhabditis elegans GN=rpl-5 PE=2 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.029e-54
Identity = 103/181 (56.91%), Postives = 130/181 (71.82%), Query Frame = 1
Query:   13 ARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHXDKRFAGFSKDGKQLDAEVHRKYIFGGHVAAYMITLME 555
            AR RL  QDKNKYNTPKYR +VR TNKD++AQ+  + I GD V+A+AY+HELPRYGL+VGLTNYAAAY TGLLLARR LK + +D  Y+G+ E TGEDY+VE    R PF+A+LD+GL +TTTG+++F            +PH + RF GF ++ K+ +AE HR  I G HVA YM  L E
Sbjct:   32 ARKRLTVQDKNKYNTPKYRLIVRITNKDVVAQLAYSKIEGDVVVASAYSHELPRYGLKVGLTNYAAAYATGLLLARRHLKTIGLDSTYKGHEELTGEDYNVEEEGDRAPFKAVLDIGLARTTTGSKIFAVMKGVADGGINVPHSESRFFGFDQESKEYNAEAHRDRILGKHVADYMTYLKE 212          
BLAST of FC876597 vs. ExPASy Swiss-Prot
Match: RL5_CAEBR (60S ribosomal protein L5 OS=Caenorhabditis briggsae GN=rpl-5 PE=3 SV=2)

HSP 1 Score: 211.846 bits (538), Expect = 1.755e-54
Identity = 104/181 (57.46%), Postives = 128/181 (70.72%), Query Frame = 1
Query:   13 ARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHXDKRFAGFSKDGKQLDAEVHRKYIFGGHVAAYMITLME 555
            AR RL  QDKNKYNTPKYR +VR TNKDI+AQ+  + I GD V+A+AYAHELPRYGL+ GLTNYAAAY TGLLLARR LK + +D  Y+G+ E TGEDY+VE    R PF+A+LD+GL +TTTG+++F            +PH + RF GF ++ K  +AE HR  I G HVA YM  L E
Sbjct:   32 ARKRLTVQDKNKYNTPKYRLIVRLTNKDIVAQLAYSKIEGDVVVASAYAHELPRYGLKAGLTNYAAAYATGLLLARRHLKAIGLDSTYKGHEELTGEDYNVEEEGDRAPFKAVLDIGLARTTTGSKIFAVMKGVADGGINVPHSESRFFGFDQESKDYNAEAHRDRILGKHVADYMSLLKE 212          
BLAST of FC876597 vs. ExPASy Swiss-Prot
Match: RL5_HUMAN (60S ribosomal protein L5 OS=Homo sapiens GN=RPL5 PE=1 SV=3)

HSP 1 Score: 210.69 bits (535), Expect = 3.909e-54
Identity = 107/182 (58.79%), Postives = 128/182 (70.33%), Query Frame = 1
Query:   13 ARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTR-RPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHXDKRFAGFSKDGKQLDAEVHRKYIFGGHVAAYMITLME 555
            AR RL+ QDKNKYNTPKYR +VR TN+DII QI  A I GD ++ AAYAHELP+YG++VGLTNYAAAYCTGLLLARR+L    MD  YEG VE TG++Y+VE  D +   F   LD GL +TTTGN+VF            IPH  KRF G+  + K+ +AEVHRK+I G +VA YM  LME
Sbjct:   32 ARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEVTGDEYNVESIDGQPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMGQNVADYMRYLME 213          
The following BLAST results are available for this feature:
BLAST of FC876597 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
RL5_CUCSA4.432e-8282.9760S ribosomal protein L5 OS=Cucumis sativus GN=RPL... [more]
RL52_ARATH2.689e-7980.2260S ribosomal protein L5-2 OS=Arabidopsis thaliana... [more]
RL51_ARATH2.689e-7980.2260S ribosomal protein L5-1 OS=Arabidopsis thaliana... [more]
RL51_ORYSJ7.322e-7777.4760S ribosomal protein L5-1 OS=Oryza sativa subsp. ... [more]
RL51_ORYSI7.322e-7777.4760S ribosomal protein L5-1 OS=Oryza sativa subsp. ... [more]
RL52_ORYSJ6.414e-7375.8260S ribosomal protein L5-2 OS=Oryza sativa subsp. ... [more]
RL5_SUBDO3.778e-5761.2060S ribosomal protein L5 OS=Suberites domuncula GN... [more]
RL5_CAEEL1.029e-5456.9160S ribosomal protein L5 OS=Caenorhabditis elegans... [more]
RL5_CAEBR1.755e-5457.4660S ribosomal protein L5 OS=Caenorhabditis briggsa... [more]
RL5_HUMAN3.909e-5458.7960S ribosomal protein L5 OS=Homo sapiens GN=RPL5 P... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN2DC09RM1 EHR Citrus clementina cDNA clone KN0AAN2DC09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876597 ID=FC876597; Name=FC876597; organism=Citrus clementina; type=EST; length=555bp
GCACGAGGCAGAGCTAGAATTCGCTTGATTAATCAGGACAAGAATAAGTA
CAACACACCCAAATACCGATTTGTTGTCCGATTCACAAACAAGGACATCA
TTGCACAGATAGTGTCAGCCAACATTGTTGGTGATTCTGTCCTTGCTGCT
GCTTATGCCCATGAGCTTCCTCGTTATGGACTTGAAGTAGGTCTTACAAA
CTATGCTGCAGCTTATTGCACTGGGCTTCTTTTGGCTCGTCGTGTCTTGA
AGATGCTTGAAATGGATGATGAGTATGAGGGCAATGTTGAGGCTACCGGA
GAGGATTACTCTGTCGAACCAGCTGATACAAGGAGGCCATTCCGTGCTCT
CCTTGATGTTGGGCTCATCAAAACAACAACTGGAAACCGTGTCTTTGGTG
CTCTGAAGGGAGCATTAGATGGTGGATTGGACATTCCTCATANTGACAAG
AGGTTTGCTGGTTTTTCTAAGGATGGCAAGCAGCTGGATGCTGAGGTTCA
CCGCAAGTATATCTTTGGTGGACATGTTGCTGCTTACATGATTACATTGA
TGGAG
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